Wall clock time and date at job start Mon Mar 8 2021 09:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34233 * 116.99670 * 2 1 4 4 O 1.20822 * 120.00095 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99692 * 179.97438 * 3 2 1 6 6 H 1.08997 * 112.85184 * 311.19958 * 5 3 2 7 7 C 1.53958 * 113.66235 * 82.43940 * 5 3 2 8 8 C 1.53782 * 87.01469 * 139.93336 * 7 5 3 9 9 H 1.08997 * 113.61971 * 89.23379 * 8 7 5 10 10 S 1.81401 * 113.61202 * 220.04572 * 8 7 5 11 11 O 1.42102 * 110.54269 * 172.51432 * 10 8 7 12 12 O 1.42108 * 110.54306 * 35.76366 * 10 8 7 13 13 O 1.52199 * 104.45123 * 284.13749 * 10 8 7 14 14 C 1.35898 * 114.00071 * 75.00199 * 13 10 8 15 15 C 1.38712 * 120.05524 * 269.98124 * 14 13 10 16 16 C 1.38164 * 119.94590 * 180.02562 * 15 14 13 17 17 C 1.50710 * 119.97278 * 179.97438 * 16 15 14 18 18 F 1.39903 * 109.46693 * 359.97438 * 17 16 15 19 19 F 1.39901 * 109.47009 * 119.99597 * 17 16 15 20 20 F 1.39901 * 109.46848 * 240.00073 * 17 16 15 21 21 C 1.38240 * 120.05660 * 359.74331 * 16 15 14 22 22 C 1.38291 * 120.10872 * 0.50686 * 21 16 15 23 23 C 1.50705 * 119.96987 * 179.76520 * 22 21 16 24 24 O 1.42894 * 109.47171 * 299.72879 * 23 22 21 25 25 Si 1.86298 * 109.46780 * 179.72319 * 23 22 21 26 26 C 1.38118 * 120.05718 * 359.49710 * 22 21 16 27 27 C 1.53777 * 113.61176 * 179.97438 * 5 3 2 28 28 H 1.08997 * 109.47455 * 59.99865 * 1 2 3 29 29 H 1.08997 * 109.46972 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46940 * 300.00117 * 1 2 3 31 31 H 1.08992 * 113.61713 * 25.41234 * 7 5 3 32 32 H 1.09004 * 113.66391 * 254.45830 * 7 5 3 33 33 H 1.08007 * 120.02539 * 0.03723 * 15 14 13 34 34 H 1.08003 * 119.94753 * 180.25796 * 21 16 15 35 35 H 1.09004 * 109.46779 * 59.73202 * 23 22 21 36 36 H 0.96709 * 113.99337 * 180.02562 * 24 23 22 37 37 H 1.48506 * 109.99834 * 60.00830 * 25 23 22 38 38 H 1.48502 * 110.00011 * 181.32094 * 25 23 22 39 39 H 1.07999 * 120.03144 * 180.27438 * 26 22 21 40 40 H 1.08995 * 113.61099 * 105.47630 * 27 5 3 41 41 H 1.09000 * 113.62014 * 334.56903 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0233 0.6366 0.7566 7 6 4.1936 1.1217 -1.3970 8 6 5.1813 2.2267 -0.9866 9 1 6.0816 1.8495 -0.5014 10 16 5.5398 3.4104 -2.3136 11 8 6.3167 4.4929 -1.8198 12 8 4.3807 3.6407 -3.1029 13 8 6.4850 2.6636 -3.2437 14 6 5.8759 1.7221 -4.0114 15 6 5.7569 0.4196 -3.5494 16 6 5.1376 -0.5359 -4.3320 17 6 5.0085 -1.9514 -3.8309 18 9 5.5865 -2.0509 -2.5607 19 9 3.6552 -2.2981 -3.7564 20 9 5.6647 -2.8191 -4.7106 21 6 4.6320 -0.1936 -5.5722 22 6 4.7539 1.1030 -6.0373 23 6 4.2062 1.4715 -7.3921 24 8 4.8524 0.6871 -8.3965 25 14 4.5200 3.2788 -7.7180 26 6 5.3722 2.0619 -5.2588 27 6 4.1076 2.7143 -0.0001 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.5269 1.4116 -2.2091 32 1 4.6657 0.1529 -1.5609 33 1 6.1479 0.1526 -2.5786 34 1 4.1445 -0.9410 -6.1807 35 1 3.1336 1.2791 -7.4149 36 1 4.5487 0.8721 -9.2958 37 1 5.9790 3.5542 -7.6895 38 1 3.9564 3.6622 -9.0373 39 1 5.4632 3.0754 -5.6206 40 1 4.5104 3.0297 0.9623 41 1 3.4174 3.4403 -0.4297 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_10339942_13206342.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:08:29 Heat of formation + Delta-G solvation = -289.567944 kcal Electronic energy + Delta-G solvation = -37961.840486 eV Core-core repulsion = 32295.890388 eV Total energy + Delta-G solvation = -5665.950098 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 397.066 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -51.34248 -48.87276 -48.76833 -42.67587 -41.93240 -40.16994 -39.71910 -38.39645 -37.93928 -37.37510 -37.31423 -34.06010 -32.29838 -29.99202 -28.14160 -27.63683 -27.55313 -27.02556 -24.94107 -23.55060 -22.85243 -21.70765 -20.95168 -20.08252 -19.75493 -19.65516 -19.41988 -19.00234 -18.81890 -18.34312 -18.22074 -18.14796 -17.76010 -17.50655 -16.93243 -16.81134 -16.27789 -15.89954 -15.69781 -15.65682 -15.46952 -15.21317 -14.96221 -14.92367 -14.87183 -14.72908 -14.62049 -14.53167 -14.23096 -14.17004 -14.01238 -13.91862 -13.72145 -13.59492 -13.42899 -13.34989 -13.29986 -13.23740 -13.14788 -12.83057 -12.48414 -12.09978 -12.05144 -11.84225 -11.75033 -11.36431 -10.90763 -10.71781 -10.37251 -5.08548 -1.32118 -0.70160 -0.45138 0.70161 0.99717 1.04058 1.36971 1.41974 1.59357 1.66608 1.78243 2.17463 2.39266 2.45177 2.66355 2.69295 2.84289 2.97138 3.02607 3.18121 3.19569 3.33266 3.34787 3.43890 3.55108 3.64611 3.76666 3.78799 3.95155 4.10956 4.11561 4.13575 4.14566 4.21065 4.26455 4.37497 4.42556 4.43757 4.48482 4.56839 4.69815 4.71684 5.07921 5.30138 6.17560 6.63059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.355 6.355 3 C 0.467 3.533 4 O -0.497 6.497 5 C -0.093 4.093 6 H 0.139 0.861 7 C -0.108 4.108 8 C -0.650 4.650 9 H 0.170 0.830 10 S 2.594 3.406 11 O -0.912 6.912 12 O -0.935 6.935 13 O -0.655 6.655 14 C 0.075 3.925 15 C -0.080 4.080 16 C -0.169 4.169 17 C 0.513 3.487 18 F -0.173 7.173 19 F -0.168 7.168 20 F -0.168 7.168 21 C -0.020 4.020 22 C -0.053 4.053 23 C -0.076 4.076 24 O -0.534 6.534 25 Si 0.673 3.327 26 C -0.055 4.055 27 C -0.086 4.086 28 H 0.066 0.934 29 H 0.104 0.896 30 H 0.065 0.935 31 H 0.112 0.888 32 H 0.105 0.895 33 H 0.163 0.837 34 H 0.152 0.848 35 H 0.092 0.908 36 H 0.387 0.613 37 H -0.247 1.247 38 H -0.248 1.248 39 H 0.154 0.846 40 H 0.107 0.893 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.570 -3.038 -0.175 3.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.271 6.271 3 C 0.309 3.691 4 O -0.384 6.384 5 C -0.113 4.113 6 H 0.157 0.843 7 C -0.146 4.146 8 C -0.757 4.757 9 H 0.187 0.813 10 S 2.689 3.311 11 O -0.910 6.910 12 O -0.934 6.934 13 O -0.613 6.613 14 C 0.033 3.967 15 C -0.100 4.100 16 C -0.171 4.171 17 C 0.459 3.541 18 F -0.155 7.155 19 F -0.149 7.149 20 F -0.149 7.149 21 C -0.039 4.039 22 C -0.054 4.054 23 C -0.186 4.186 24 O -0.342 6.342 25 Si 0.573 3.427 26 C -0.075 4.075 27 C -0.124 4.124 28 H 0.085 0.915 29 H 0.123 0.877 30 H 0.084 0.916 31 H 0.130 0.870 32 H 0.123 0.877 33 H 0.180 0.820 34 H 0.170 0.830 35 H 0.110 0.890 36 H 0.236 0.764 37 H -0.171 1.171 38 H -0.173 1.173 39 H 0.171 0.829 40 H 0.125 0.875 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.888 -1.763 -0.539 2.639 hybrid contribution -0.048 -1.303 -0.196 1.318 sum -1.936 -3.066 -0.735 3.700 Atomic orbital electron populations 1.23360 0.75652 1.04149 1.02879 1.86513 1.23938 1.32950 1.83703 1.23416 0.91440 0.81706 0.72551 1.90712 1.66789 1.36345 1.44530 1.22438 0.88056 1.00141 1.00661 0.84330 1.23073 0.95939 0.98534 0.97063 1.32272 1.08337 1.15955 1.19122 0.81265 1.05680 0.73885 0.75622 0.75910 1.93684 1.68563 1.48202 1.80568 1.93680 1.51835 1.83858 1.64000 1.85777 1.58288 1.56974 1.60268 1.17465 1.00560 0.86519 0.92134 1.21233 0.96647 0.90791 1.01318 1.19758 1.06842 0.92581 0.97872 1.18018 0.74449 0.86193 0.75461 1.93191 1.84565 1.96599 1.41112 1.93272 1.32364 1.93222 1.96040 1.93275 1.81033 1.71951 1.68684 1.20992 0.93783 0.96591 0.92514 1.19070 0.98483 0.92751 0.95062 1.24717 0.99274 1.07913 0.86651 1.86555 1.66430 1.62602 1.18618 0.94845 0.83999 0.76658 0.87236 1.21356 0.93058 1.00889 0.92185 1.22630 0.93840 0.95978 0.99981 0.91544 0.87737 0.91635 0.86971 0.87679 0.81958 0.82981 0.89003 0.76362 1.17146 1.17273 0.82882 0.87467 0.86936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.56 101.05 1.07 1.02 16 2 O -0.35 -0.15 10.57 -39.27 -0.41 -0.57 16 3 C 0.47 0.37 7.49 36.01 0.27 0.64 16 4 O -0.50 -1.83 15.65 -18.75 -0.29 -2.13 16 5 C -0.09 0.22 4.26 -90.87 -0.39 -0.17 16 6 H 0.14 -0.66 8.14 -51.93 -0.42 -1.08 16 7 C -0.11 0.32 4.73 -25.82 -0.12 0.20 16 8 C -0.65 1.99 4.02 -25.94 -0.10 1.88 16 9 H 0.17 -1.03 8.14 -51.93 -0.42 -1.46 16 10 S 2.59 1.18 5.15 -107.50 -0.55 0.63 16 11 O -0.91 -3.67 18.09 -67.04 -1.21 -4.88 16 12 O -0.94 -1.56 15.63 -67.04 -1.05 -2.60 16 13 O -0.65 -0.18 10.05 -51.74 -0.52 -0.70 16 14 C 0.07 -0.01 4.62 -39.21 -0.18 -0.20 16 15 C -0.08 0.14 6.04 -39.43 -0.24 -0.09 16 16 C -0.17 0.24 5.37 -104.64 -0.56 -0.32 16 17 C 0.51 -0.49 3.32 36.01 0.12 -0.37 16 18 F -0.17 0.22 15.64 2.25 0.04 0.25 16 19 F -0.17 0.09 17.23 2.25 0.04 0.13 16 20 F -0.17 -0.06 17.24 2.25 0.04 -0.03 16 21 C -0.02 0.03 9.16 -39.56 -0.36 -0.33 16 22 C -0.05 0.05 5.42 -104.64 -0.57 -0.52 16 23 C -0.08 0.16 2.81 36.01 0.10 0.27 16 24 O -0.53 0.73 12.75 -35.23 -0.45 0.28 16 25 Si 0.67 -1.10 29.79 -169.99 -5.06 -6.16 16 26 C -0.06 0.01 7.67 -39.43 -0.30 -0.30 16 27 C -0.09 0.19 6.99 -25.94 -0.18 0.01 16 28 H 0.07 -0.08 8.13 -51.93 -0.42 -0.50 16 29 H 0.10 -0.37 8.14 -51.93 -0.42 -0.79 16 30 H 0.06 -0.08 8.13 -51.93 -0.42 -0.50 16 31 H 0.11 -0.29 7.52 -51.93 -0.39 -0.68 16 32 H 0.10 -0.50 5.54 -51.93 -0.29 -0.79 16 33 H 0.16 -0.71 5.55 -52.48 -0.29 -1.01 16 34 H 0.15 -0.42 8.06 -52.48 -0.42 -0.84 16 35 H 0.09 -0.40 7.96 -51.93 -0.41 -0.82 16 36 H 0.39 -1.99 8.74 45.56 0.40 -1.59 16 37 H -0.25 -0.31 7.11 56.52 0.40 0.09 16 38 H -0.25 0.03 7.11 56.52 0.40 0.43 16 39 H 0.15 -0.15 4.88 -52.49 -0.26 -0.41 16 40 H 0.11 -0.43 8.14 -51.93 -0.42 -0.85 16 41 H 0.11 -0.13 7.39 -51.93 -0.38 -0.51 16 LS Contribution 368.93 15.07 5.56 5.56 Total: 0.00 -10.67 368.93 -9.11 -19.78 By element: Atomic # 1 Polarization: -7.51 SS G_CDS: -3.78 Total: -11.29 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -1.45 Total: 1.73 kcal Atomic # 8 Polarization: -6.66 SS G_CDS: -3.94 Total: -10.60 kcal Atomic # 9 Polarization: 0.24 SS G_CDS: 0.11 Total: 0.35 kcal Atomic # 14 Polarization: -1.10 SS G_CDS: -5.06 Total: -6.16 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -0.55 Total: 0.63 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -10.67 -9.11 -19.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10339942_13206342.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -269.789 kcal (2) G-P(sol) polarization free energy of solvation -10.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -280.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -289.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds