Wall clock time and date at job start Mon Mar 8 2021 09:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34233 * 116.99670 * 2 1 4 4 O 1.20822 * 120.00095 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99692 * 179.97438 * 3 2 1 6 6 H 1.08997 * 112.85184 * 311.19958 * 5 3 2 7 7 C 1.53958 * 113.66235 * 82.43940 * 5 3 2 8 8 C 1.53782 * 87.01469 * 139.93336 * 7 5 3 9 9 H 1.08997 * 113.61971 * 89.23379 * 8 7 5 10 10 S 1.81401 * 113.61202 * 220.04572 * 8 7 5 11 11 O 1.42102 * 110.54269 * 172.51432 * 10 8 7 12 12 O 1.42108 * 110.54306 * 35.76366 * 10 8 7 13 13 O 1.52199 * 104.45123 * 284.13749 * 10 8 7 14 14 C 1.35898 * 114.00071 * 75.00199 * 13 10 8 15 15 C 1.38712 * 120.05524 * 269.98124 * 14 13 10 16 16 C 1.38164 * 119.94590 * 180.02562 * 15 14 13 17 17 C 1.50710 * 119.97278 * 179.97438 * 16 15 14 18 18 F 1.39903 * 109.46693 * 359.97438 * 17 16 15 19 19 F 1.39901 * 109.47009 * 119.99597 * 17 16 15 20 20 F 1.39901 * 109.46848 * 240.00073 * 17 16 15 21 21 C 1.38240 * 120.05660 * 359.74331 * 16 15 14 22 22 C 1.38291 * 120.10872 * 0.50686 * 21 16 15 23 23 C 1.50705 * 119.96987 * 179.76520 * 22 21 16 24 24 O 1.42894 * 109.47171 * 299.72879 * 23 22 21 25 25 Si 1.86298 * 109.46780 * 179.72319 * 23 22 21 26 26 C 1.38118 * 120.05718 * 359.49710 * 22 21 16 27 27 C 1.53777 * 113.61176 * 179.97438 * 5 3 2 28 28 H 1.08997 * 109.47455 * 59.99865 * 1 2 3 29 29 H 1.08997 * 109.46972 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46940 * 300.00117 * 1 2 3 31 31 H 1.08992 * 113.61713 * 25.41234 * 7 5 3 32 32 H 1.09004 * 113.66391 * 254.45830 * 7 5 3 33 33 H 1.08007 * 120.02539 * 0.03723 * 15 14 13 34 34 H 1.08003 * 119.94753 * 180.25796 * 21 16 15 35 35 H 1.09004 * 109.46779 * 59.73202 * 23 22 21 36 36 H 0.96709 * 113.99337 * 180.02562 * 24 23 22 37 37 H 1.48506 * 109.99834 * 60.00830 * 25 23 22 38 38 H 1.48502 * 110.00011 * 181.32094 * 25 23 22 39 39 H 1.07999 * 120.03144 * 180.27438 * 26 22 21 40 40 H 1.08995 * 113.61099 * 105.47630 * 27 5 3 41 41 H 1.09000 * 113.62014 * 334.56903 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0233 0.6366 0.7566 7 6 4.1936 1.1217 -1.3970 8 6 5.1813 2.2267 -0.9866 9 1 6.0816 1.8495 -0.5014 10 16 5.5398 3.4104 -2.3136 11 8 6.3167 4.4929 -1.8198 12 8 4.3807 3.6407 -3.1029 13 8 6.4850 2.6636 -3.2437 14 6 5.8759 1.7221 -4.0114 15 6 5.7569 0.4196 -3.5494 16 6 5.1376 -0.5359 -4.3320 17 6 5.0085 -1.9514 -3.8309 18 9 5.5865 -2.0509 -2.5607 19 9 3.6552 -2.2981 -3.7564 20 9 5.6647 -2.8191 -4.7106 21 6 4.6320 -0.1936 -5.5722 22 6 4.7539 1.1030 -6.0373 23 6 4.2062 1.4715 -7.3921 24 8 4.8524 0.6871 -8.3965 25 14 4.5200 3.2788 -7.7180 26 6 5.3722 2.0619 -5.2588 27 6 4.1076 2.7143 -0.0001 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.5269 1.4116 -2.2091 32 1 4.6657 0.1529 -1.5609 33 1 6.1479 0.1526 -2.5786 34 1 4.1445 -0.9410 -6.1807 35 1 3.1336 1.2791 -7.4149 36 1 4.5487 0.8721 -9.2958 37 1 5.9790 3.5542 -7.6895 38 1 3.9564 3.6622 -9.0373 39 1 5.4632 3.0754 -5.6206 40 1 4.5104 3.0297 0.9623 41 1 3.4174 3.4403 -0.4297 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10339942_13206342.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:08:28 Heat of formation + Delta-G solvation = -290.862117 kcal Electronic energy + Delta-G solvation = -37961.896605 eV Core-core repulsion = 32295.890388 eV Total energy + Delta-G solvation = -5666.006218 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 397.066 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -51.25018 -48.76734 -48.69758 -42.59949 -41.89547 -40.07287 -39.59137 -38.47786 -37.79638 -37.42308 -37.39801 -33.93642 -32.18578 -29.88711 -27.98858 -27.47109 -27.43427 -26.83950 -24.86540 -23.49309 -22.73847 -21.65124 -20.79314 -20.01721 -19.65879 -19.56515 -19.31614 -18.99993 -18.67147 -18.32183 -18.15452 -18.03114 -17.68929 -17.46447 -16.75672 -16.74553 -16.21729 -15.84208 -15.61194 -15.55785 -15.36489 -15.12342 -14.87452 -14.84047 -14.79449 -14.66173 -14.56485 -14.48087 -14.10175 -14.05319 -13.89936 -13.80647 -13.66166 -13.59113 -13.39352 -13.34939 -13.29355 -13.15661 -12.99911 -12.72441 -12.36522 -12.08594 -11.87332 -11.82710 -11.62301 -11.33898 -10.77593 -10.60502 -10.23283 -4.99490 -1.28277 -0.58230 -0.35152 0.74697 1.04256 1.11644 1.45842 1.47063 1.70124 1.77720 1.83552 2.26688 2.49987 2.54218 2.79622 2.88586 2.98744 3.10352 3.18322 3.28150 3.38674 3.46984 3.56808 3.63441 3.66988 3.79898 3.91972 3.94450 4.23973 4.29102 4.31620 4.33256 4.36571 4.39866 4.48878 4.53081 4.55334 4.64345 4.71567 4.72732 4.82071 4.95816 5.20080 5.33873 6.52116 6.63479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.358 6.358 3 C 0.464 3.536 4 O -0.535 6.535 5 C -0.088 4.088 6 H 0.172 0.828 7 C -0.114 4.114 8 C -0.622 4.622 9 H 0.210 0.790 10 S 2.587 3.413 11 O -0.959 6.959 12 O -0.958 6.958 13 O -0.658 6.658 14 C 0.059 3.941 15 C -0.074 4.074 16 C -0.170 4.170 17 C 0.517 3.483 18 F -0.169 7.169 19 F -0.170 7.170 20 F -0.177 7.177 21 C -0.018 4.018 22 C -0.061 4.061 23 C -0.069 4.069 24 O -0.549 6.549 25 Si 0.712 3.288 26 C -0.074 4.074 27 C -0.099 4.099 28 H 0.061 0.939 29 H 0.128 0.872 30 H 0.061 0.939 31 H 0.104 0.896 32 H 0.130 0.870 33 H 0.191 0.809 34 H 0.166 0.834 35 H 0.122 0.878 36 H 0.403 0.597 37 H -0.295 1.295 38 H -0.267 1.267 39 H 0.150 0.850 40 H 0.128 0.872 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.608 -5.286 0.775 5.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.274 6.274 3 C 0.307 3.693 4 O -0.425 6.425 5 C -0.107 4.107 6 H 0.190 0.810 7 C -0.152 4.152 8 C -0.732 4.732 9 H 0.227 0.773 10 S 2.687 3.313 11 O -0.957 6.957 12 O -0.957 6.957 13 O -0.617 6.617 14 C 0.017 3.983 15 C -0.093 4.093 16 C -0.171 4.171 17 C 0.463 3.537 18 F -0.150 7.150 19 F -0.151 7.151 20 F -0.158 7.158 21 C -0.037 4.037 22 C -0.061 4.061 23 C -0.179 4.179 24 O -0.360 6.360 25 Si 0.617 3.383 26 C -0.094 4.094 27 C -0.137 4.137 28 H 0.080 0.920 29 H 0.147 0.853 30 H 0.080 0.920 31 H 0.123 0.877 32 H 0.148 0.852 33 H 0.208 0.792 34 H 0.184 0.816 35 H 0.140 0.860 36 H 0.254 0.746 37 H -0.222 1.222 38 H -0.192 1.192 39 H 0.167 0.833 40 H 0.146 0.854 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.933 -3.983 0.369 4.443 hybrid contribution -0.050 -0.631 -0.518 0.818 sum -1.984 -4.614 -0.149 5.024 Atomic orbital electron populations 1.23544 0.75047 1.05636 1.02513 1.86515 1.24706 1.32797 1.83384 1.24086 0.92678 0.81207 0.71282 1.90698 1.67879 1.37495 1.46383 1.22629 0.85901 1.00401 1.01807 0.81023 1.23232 0.95796 0.99470 0.96671 1.32142 1.09844 1.14291 1.16971 0.77268 1.05689 0.73073 0.76045 0.76501 1.93624 1.69589 1.51141 1.81332 1.93641 1.52206 1.84642 1.65171 1.85742 1.58132 1.57245 1.60598 1.17652 1.01327 0.87074 0.92241 1.21478 0.95775 0.89780 1.02298 1.19764 1.06966 0.92432 0.97973 1.17973 0.74255 0.86009 0.75447 1.93195 1.84484 1.96578 1.40775 1.93271 1.32530 1.93248 1.96046 1.93260 1.81218 1.72277 1.69055 1.21173 0.93359 0.96504 0.92679 1.19190 0.98566 0.92897 0.95489 1.24645 1.00815 1.06397 0.86090 1.86515 1.67102 1.62588 1.19819 0.94379 0.80788 0.77154 0.86022 1.21540 0.93734 1.01201 0.92905 1.22772 0.93853 0.96093 1.01019 0.91992 0.85341 0.92016 0.87731 0.85237 0.79239 0.81644 0.86047 0.74579 1.22171 1.19218 0.83290 0.85358 0.88797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.07 10.56 113.37 1.20 1.13 16 2 O -0.36 -0.03 10.57 -51.45 -0.54 -0.57 16 3 C 0.46 0.57 7.49 71.24 0.53 1.10 16 4 O -0.54 -4.45 15.65 21.98 0.34 -4.11 16 5 C -0.09 0.58 4.26 -10.95 -0.05 0.53 16 6 H 0.17 -2.26 8.14 -2.39 -0.02 -2.28 16 7 C -0.11 0.88 4.73 31.18 0.15 1.02 16 8 C -0.62 4.70 4.02 31.11 0.13 4.83 16 9 H 0.21 -3.28 8.14 -2.39 -0.02 -3.30 16 10 S 2.59 4.97 5.15 -56.49 -0.29 4.68 16 11 O -0.96 -9.51 18.09 -118.57 -2.15 -11.65 16 12 O -0.96 -5.03 15.63 -118.57 -1.85 -6.88 16 13 O -0.66 -0.88 10.05 -61.49 -0.62 -1.50 16 14 C 0.06 -0.01 4.62 22.51 0.10 0.10 16 15 C -0.07 0.36 6.04 22.37 0.14 0.49 16 16 C -0.17 0.70 5.37 -19.88 -0.11 0.59 16 17 C 0.52 -1.84 3.32 71.24 0.24 -1.60 16 18 F -0.17 0.83 15.64 44.97 0.70 1.53 16 19 F -0.17 0.44 17.23 44.97 0.77 1.22 16 20 F -0.18 0.08 17.24 44.97 0.78 0.86 16 21 C -0.02 0.07 9.16 22.28 0.20 0.27 16 22 C -0.06 0.11 5.42 -19.88 -0.11 0.00 16 23 C -0.07 0.31 2.81 71.24 0.20 0.51 16 24 O -0.55 1.68 12.75 -148.98 -1.90 -0.22 16 25 Si 0.71 -1.18 29.79 68.60 2.04 0.86 16 26 C -0.07 -0.06 7.67 22.37 0.17 0.11 16 27 C -0.10 0.53 6.99 31.11 0.22 0.74 16 28 H 0.06 -0.12 8.13 -2.39 -0.02 -0.14 16 29 H 0.13 -1.04 8.14 -2.39 -0.02 -1.06 16 30 H 0.06 -0.13 8.13 -2.38 -0.02 -0.15 16 31 H 0.10 -0.58 7.52 -2.39 -0.02 -0.60 16 32 H 0.13 -1.64 5.54 -2.38 -0.01 -1.66 16 33 H 0.19 -2.18 5.55 -2.91 -0.02 -2.19 16 34 H 0.17 -1.13 8.06 -2.91 -0.02 -1.15 16 35 H 0.12 -1.23 7.96 -2.38 -0.02 -1.25 16 36 H 0.40 -4.29 8.74 -74.05 -0.65 -4.93 16 37 H -0.29 -1.74 7.11 99.48 0.71 -1.04 16 38 H -0.27 -0.30 7.11 99.48 0.71 0.41 16 39 H 0.15 0.07 4.88 -2.91 -0.01 0.06 16 40 H 0.13 -1.23 8.14 -2.39 -0.02 -1.25 16 41 H 0.09 -0.10 7.39 -2.39 -0.02 -0.12 16 Total: 0.00 -27.45 368.93 0.83 -26.62 By element: Atomic # 1 Polarization: -21.19 SS G_CDS: 0.53 Total: -20.66 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: 3.01 Total: 9.82 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -6.72 Total: -24.93 kcal Atomic # 9 Polarization: 1.35 SS G_CDS: 2.25 Total: 3.61 kcal Atomic # 14 Polarization: -1.18 SS G_CDS: 2.04 Total: 0.86 kcal Atomic # 16 Polarization: 4.97 SS G_CDS: -0.29 Total: 4.68 kcal Total: -27.45 0.83 -26.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10339942_13206342.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -264.237 kcal (2) G-P(sol) polarization free energy of solvation -27.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -291.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -290.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds