Wall clock time and date at job start Mon Mar 8 2021 10:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86302 * 109.47087 * 2 1 4 4 C 1.86305 * 109.46890 * 239.99950 * 2 1 3 5 5 C 1.86296 * 109.47158 * 120.00143 * 2 1 3 6 6 C 1.53000 * 109.47435 * 60.00038 * 5 2 1 7 7 C 1.53000 * 109.47547 * 179.97438 * 6 5 2 8 8 S 1.81395 * 109.47362 * 179.97438 * 7 6 5 9 9 O 1.42102 * 110.54203 * 68.37780 * 8 7 6 10 10 O 1.42102 * 110.54386 * 291.62613 * 8 7 6 11 11 O 1.52196 * 104.44853 * 180.02562 * 8 7 6 12 12 C 1.35900 * 114.00197 * 74.99958 * 11 8 7 13 13 C 1.38712 * 120.05227 * 90.00277 * 12 11 8 14 14 C 1.38162 * 119.94343 * 180.02562 * 13 12 11 15 15 C 1.50701 * 119.97405 * 179.97438 * 14 13 12 16 16 O 1.42905 * 109.46937 * 120.00073 * 15 14 13 17 17 Si 1.86301 * 109.47149 * 0.02562 * 15 14 13 18 18 H 1.48492 * 109.47150 * 179.97438 * 17 15 14 19 19 H 1.48496 * 109.46781 * 299.99883 * 17 15 14 20 20 H 1.48503 * 109.46998 * 59.99699 * 17 15 14 21 21 C 1.38251 * 120.05560 * 0.24937 * 14 13 12 22 22 C 1.38288 * 120.10848 * 359.49525 * 21 14 13 23 23 C 1.50697 * 119.97243 * 180.28053 * 22 21 14 24 24 F 1.39900 * 109.47119 * 180.23241 * 23 22 21 25 25 F 1.39907 * 109.46949 * 300.22604 * 23 22 21 26 26 F 1.39899 * 109.47460 * 60.22338 * 23 22 21 27 27 C 1.38122 * 120.05740 * 0.50615 * 22 21 14 28 28 H 1.09003 * 109.46589 * 299.99908 * 1 2 3 29 29 H 1.08995 * 109.47298 * 60.00024 * 1 2 3 30 30 H 1.09003 * 109.47305 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47049 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.46991 * 300.00034 * 3 2 1 33 33 H 1.08995 * 109.47100 * 59.99957 * 3 2 1 34 34 H 1.08991 * 109.47218 * 300.00156 * 4 2 1 35 35 H 1.09008 * 109.46571 * 60.00265 * 4 2 1 36 36 H 1.09005 * 109.47020 * 179.97438 * 4 2 1 37 37 H 1.09003 * 109.47330 * 299.99496 * 5 2 1 38 38 H 1.09000 * 109.46783 * 179.97438 * 5 2 1 39 39 H 1.09000 * 109.46836 * 59.99627 * 6 5 2 40 40 H 1.09002 * 109.46699 * 300.00137 * 6 5 2 41 41 H 1.09006 * 109.46326 * 59.99750 * 7 6 5 42 42 H 1.08997 * 109.46866 * 300.00640 * 7 6 5 43 43 H 1.08002 * 120.03097 * 0.04058 * 13 12 11 44 44 H 1.09001 * 109.46927 * 239.99818 * 15 14 13 45 45 H 0.96705 * 113.99788 * 300.00011 * 16 15 14 46 46 H 1.07996 * 119.94384 * 179.72436 * 21 14 13 47 47 H 1.08002 * 120.03165 * 179.77344 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8783 -1.5212 5 6 2.4840 -0.8782 1.5211 6 6 1.9741 -2.3208 1.5211 7 6 2.4846 -3.0423 2.7700 8 16 1.8793 -4.7523 2.7704 9 8 2.4911 -5.4979 1.7268 10 8 0.4721 -4.7831 2.9651 11 8 2.4476 -5.3559 4.0467 12 6 1.8168 -4.9486 5.1794 13 6 0.7295 -5.6611 5.6635 14 6 0.0895 -5.2447 6.8150 15 6 -1.0922 -6.0179 7.3412 16 8 -0.8035 -6.4909 8.6584 17 14 -1.4337 -7.4679 6.2223 18 1 -2.5976 -8.2301 6.7412 19 1 -1.7334 -6.9768 4.8533 20 1 -0.2417 -8.3527 6.1809 21 6 0.5287 -4.1160 7.4817 22 6 1.6156 -3.4071 7.0040 23 6 2.0956 -2.1808 7.7368 24 9 3.1954 -1.6367 7.0647 25 9 1.0658 -1.2352 7.7878 26 9 2.4711 -2.5321 9.0378 27 6 2.2589 -3.8192 5.8533 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 3.5740 1.7565 -0.0005 32 1 2.1206 2.2703 -0.8900 33 1 2.1207 2.2703 0.8899 34 1 2.1206 -1.9058 -1.5212 35 1 2.1206 -0.3643 -2.4112 36 1 3.5740 -0.8779 -1.5214 37 1 2.1208 -0.3644 2.4111 38 1 3.5740 -0.8786 1.5208 39 1 2.3374 -2.8345 0.6311 40 1 0.8841 -2.3207 1.5211 41 1 2.1216 -2.5284 3.6602 42 1 3.5746 -3.0421 2.7696 43 1 0.3837 -6.5407 5.1409 44 1 -1.9669 -5.3683 7.3720 45 1 -0.0351 -7.0762 8.7066 46 1 0.0243 -3.7896 8.3791 47 1 3.1055 -3.2631 5.4786 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_10339942_14927650.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:01:51 Heat of formation + Delta-G solvation = -306.771929 kcal Electronic energy + Delta-G solvation = -35004.656326 eV Core-core repulsion = 29796.032531 eV Total energy + Delta-G solvation = -5208.623795 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 400.099 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -51.35612 -48.88250 -48.79022 -42.64966 -40.23859 -38.40864 -37.85859 -37.30330 -36.10126 -33.95112 -32.26277 -29.81128 -28.65792 -28.48410 -28.46342 -27.60765 -27.40424 -25.01975 -23.30285 -22.80178 -21.73758 -20.00773 -19.78197 -19.66949 -19.14984 -18.63635 -18.52223 -18.16539 -17.85790 -17.11137 -16.80895 -16.49016 -16.12726 -15.85280 -15.69144 -15.54303 -15.22905 -15.20736 -14.97832 -14.94198 -14.92392 -14.56978 -14.45890 -14.32428 -14.25365 -14.17314 -14.08072 -13.79903 -13.73839 -13.62604 -13.60395 -13.37311 -13.32149 -13.25362 -13.22798 -13.17413 -13.15886 -13.04056 -12.45919 -12.25696 -12.09159 -12.02010 -11.98043 -10.92392 -10.90730 -10.87460 -10.75614 -10.63079 -10.43917 -1.31751 -0.74637 -0.47137 0.72261 0.88912 1.27693 1.35186 1.39117 1.64385 1.66631 1.77125 1.78703 1.79301 2.33631 2.41603 2.53465 2.65026 2.70027 2.98392 3.13837 3.18137 3.25110 3.31790 3.40581 3.42963 3.55701 3.62018 3.84766 3.89767 4.11313 4.25857 4.36020 4.38046 4.39762 4.45729 4.55028 4.62578 4.65154 4.66164 4.69334 4.70114 4.70764 4.71895 4.81179 5.05407 5.16814 5.40844 5.48612 5.50103 6.27233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.453 4.453 2 Si 1.003 2.997 3 C -0.449 4.449 4 C -0.454 4.454 5 C -0.407 4.407 6 C -0.101 4.101 7 C -0.647 4.647 8 S 2.578 3.422 9 O -0.916 6.916 10 O -0.944 6.944 11 O -0.659 6.659 12 C 0.077 3.923 13 C -0.067 4.067 14 C -0.100 4.100 15 C -0.079 4.079 16 O -0.532 6.532 17 Si 0.925 3.075 18 H -0.241 1.241 19 H -0.235 1.235 20 H -0.245 1.245 21 C -0.021 4.021 22 C -0.165 4.165 23 C 0.513 3.487 24 F -0.174 7.174 25 F -0.169 7.169 26 F -0.168 7.168 27 C -0.083 4.083 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.135 0.865 42 H 0.143 0.857 43 H 0.148 0.852 44 H 0.133 0.867 45 H 0.380 0.620 46 H 0.156 0.844 47 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.193 1.871 1.047 2.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.561 4.561 2 Si 1.199 2.801 3 C -0.557 4.557 4 C -0.561 4.561 5 C -0.492 4.492 6 C -0.140 4.140 7 C -0.775 4.775 8 S 2.674 3.326 9 O -0.914 6.914 10 O -0.943 6.943 11 O -0.618 6.618 12 C 0.035 3.965 13 C -0.086 4.086 14 C -0.101 4.101 15 C -0.190 4.190 16 O -0.337 6.337 17 Si 0.745 3.255 18 H -0.164 1.164 19 H -0.158 1.158 20 H -0.168 1.168 21 C -0.040 4.040 22 C -0.167 4.167 23 C 0.459 3.541 24 F -0.155 7.155 25 F -0.150 7.150 26 F -0.149 7.149 27 C -0.103 4.103 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.153 0.847 42 H 0.161 0.839 43 H 0.166 0.834 44 H 0.151 0.849 45 H 0.228 0.772 46 H 0.174 0.826 47 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -1.011 0.786 0.460 1.361 hybrid contribution 1.251 0.893 0.205 1.551 sum 0.241 1.679 0.666 1.822 Atomic orbital electron populations 1.26174 1.20652 1.04601 1.04633 0.79319 0.67281 0.67063 0.66409 1.26105 1.06253 1.18797 1.04538 1.26179 1.06382 1.08156 1.15383 1.26176 1.06358 1.00288 1.16415 1.20991 1.01750 0.97079 0.94152 1.30937 1.13892 1.23745 1.08889 1.06051 0.74897 0.77651 0.73979 1.93681 1.77539 1.67702 1.52480 1.93675 1.31084 1.86252 1.83275 1.85787 1.70245 1.76256 1.29490 1.17560 0.94749 0.96387 0.87797 1.21491 0.92526 0.99307 0.95305 1.20288 0.98540 0.96628 0.94599 1.25023 0.97012 1.05235 0.91705 1.86567 1.52911 1.68533 1.25669 0.86003 0.82627 0.77542 0.79323 1.16391 1.15780 1.16819 1.21037 0.92500 0.91767 0.98681 1.19816 1.00669 0.97900 0.98265 1.18014 0.75438 0.83091 0.77557 1.93200 1.55007 1.87216 1.80064 1.93272 1.58625 1.66800 1.96287 1.93272 1.91481 1.91854 1.38301 1.21182 0.99660 0.95150 0.94268 0.91142 0.91076 0.91131 0.91239 0.91130 0.91232 0.91118 0.91081 0.91131 0.89951 0.89903 0.89780 0.89785 0.84693 0.83871 0.83420 0.84942 0.77230 0.82610 0.82207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.88 8.65 101.05 0.87 1.75 16 2 Si 1.00 -3.28 12.19 -169.99 -2.07 -5.36 16 3 C -0.45 0.91 8.65 101.05 0.87 1.78 16 4 C -0.45 0.84 8.65 101.05 0.87 1.72 16 5 C -0.41 1.23 4.45 37.16 0.17 1.39 16 6 C -0.10 0.22 4.59 -26.73 -0.12 0.09 16 7 C -0.65 1.59 5.46 37.16 0.20 1.80 16 8 S 2.58 2.65 5.17 -107.50 -0.56 2.10 16 9 O -0.92 -4.00 18.09 -67.03 -1.21 -5.21 16 10 O -0.94 -2.59 16.26 -67.04 -1.09 -3.68 16 11 O -0.66 -0.47 10.05 -51.75 -0.52 -0.99 16 12 C 0.08 0.00 4.80 -39.22 -0.19 -0.18 16 13 C -0.07 0.01 7.67 -39.43 -0.30 -0.29 16 14 C -0.10 0.16 5.39 -104.64 -0.56 -0.40 16 15 C -0.08 0.20 2.82 36.01 0.10 0.30 16 16 O -0.53 1.17 12.77 -35.23 -0.45 0.72 16 17 Si 0.92 -1.35 25.07 -169.99 -4.26 -5.61 16 18 H -0.24 0.09 7.11 56.52 0.40 0.49 16 19 H -0.23 0.03 7.11 56.52 0.40 0.43 16 20 H -0.24 0.35 7.11 56.52 0.40 0.75 16 21 C -0.02 0.04 9.16 -39.56 -0.36 -0.32 16 22 C -0.16 0.24 5.37 -104.65 -0.56 -0.32 16 23 C 0.51 -0.41 3.32 36.00 0.12 -0.29 16 24 F -0.17 0.11 15.97 2.25 0.04 0.15 16 25 F -0.17 0.03 17.23 2.25 0.04 0.06 16 26 F -0.17 -0.02 17.24 2.25 0.04 0.02 16 27 C -0.08 0.13 7.84 -39.43 -0.31 -0.18 16 28 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 29 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 30 H 0.07 -0.13 7.79 -51.93 -0.40 -0.54 16 31 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 32 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 33 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 34 H 0.07 -0.13 7.79 -51.93 -0.40 -0.53 16 35 H 0.07 -0.12 7.96 -51.92 -0.41 -0.53 16 36 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 37 H 0.08 -0.29 7.96 -51.93 -0.41 -0.70 16 38 H 0.08 -0.29 7.96 -51.93 -0.41 -0.70 16 39 H 0.08 -0.23 7.79 -51.93 -0.40 -0.64 16 40 H 0.08 -0.25 7.79 -51.93 -0.40 -0.65 16 41 H 0.13 -0.57 6.60 -51.92 -0.34 -0.91 16 42 H 0.14 -0.64 8.14 -51.93 -0.42 -1.06 16 43 H 0.15 -0.08 4.88 -52.49 -0.26 -0.34 16 44 H 0.13 -0.51 7.96 -51.93 -0.41 -0.93 16 45 H 0.38 -2.03 8.70 45.56 0.40 -1.63 16 46 H 0.16 -0.52 8.06 -52.49 -0.42 -0.94 16 47 H 0.16 -0.62 6.59 -52.49 -0.35 -0.97 16 LS Contribution 411.95 15.07 6.21 6.21 Total: 0.00 -8.44 411.95 -8.98 -17.42 By element: Atomic # 1 Polarization: -6.73 SS G_CDS: -5.94 Total: -12.67 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: 0.80 Total: 6.84 kcal Atomic # 8 Polarization: -5.89 SS G_CDS: -3.27 Total: -9.16 kcal Atomic # 9 Polarization: 0.12 SS G_CDS: 0.11 Total: 0.23 kcal Atomic # 14 Polarization: -4.63 SS G_CDS: -6.33 Total: -10.97 kcal Atomic # 16 Polarization: 2.65 SS G_CDS: -0.56 Total: 2.10 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -8.44 -8.98 -17.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10339942_14927650.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -289.353 kcal (2) G-P(sol) polarization free energy of solvation -8.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -297.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -306.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds