Wall clock time and date at job start Mon Mar 8 2021 10:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86302 * 109.47087 * 2 1 4 4 C 1.86305 * 109.46890 * 239.99950 * 2 1 3 5 5 C 1.86296 * 109.47158 * 120.00143 * 2 1 3 6 6 C 1.53000 * 109.47435 * 60.00038 * 5 2 1 7 7 C 1.53000 * 109.47547 * 179.97438 * 6 5 2 8 8 S 1.81395 * 109.47362 * 179.97438 * 7 6 5 9 9 O 1.42102 * 110.54203 * 68.37780 * 8 7 6 10 10 O 1.42102 * 110.54386 * 291.62613 * 8 7 6 11 11 O 1.52196 * 104.44853 * 180.02562 * 8 7 6 12 12 C 1.35900 * 114.00197 * 74.99958 * 11 8 7 13 13 C 1.38712 * 120.05227 * 90.00277 * 12 11 8 14 14 C 1.38162 * 119.94343 * 180.02562 * 13 12 11 15 15 C 1.50701 * 119.97405 * 179.97438 * 14 13 12 16 16 O 1.42905 * 109.46937 * 120.00073 * 15 14 13 17 17 Si 1.86301 * 109.47149 * 0.02562 * 15 14 13 18 18 H 1.48492 * 109.47150 * 179.97438 * 17 15 14 19 19 H 1.48496 * 109.46781 * 299.99883 * 17 15 14 20 20 H 1.48503 * 109.46998 * 59.99699 * 17 15 14 21 21 C 1.38251 * 120.05560 * 0.24937 * 14 13 12 22 22 C 1.38288 * 120.10848 * 359.49525 * 21 14 13 23 23 C 1.50697 * 119.97243 * 180.28053 * 22 21 14 24 24 F 1.39900 * 109.47119 * 180.23241 * 23 22 21 25 25 F 1.39907 * 109.46949 * 300.22604 * 23 22 21 26 26 F 1.39899 * 109.47460 * 60.22338 * 23 22 21 27 27 C 1.38122 * 120.05740 * 0.50615 * 22 21 14 28 28 H 1.09003 * 109.46589 * 299.99908 * 1 2 3 29 29 H 1.08995 * 109.47298 * 60.00024 * 1 2 3 30 30 H 1.09003 * 109.47305 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47049 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.46991 * 300.00034 * 3 2 1 33 33 H 1.08995 * 109.47100 * 59.99957 * 3 2 1 34 34 H 1.08991 * 109.47218 * 300.00156 * 4 2 1 35 35 H 1.09008 * 109.46571 * 60.00265 * 4 2 1 36 36 H 1.09005 * 109.47020 * 179.97438 * 4 2 1 37 37 H 1.09003 * 109.47330 * 299.99496 * 5 2 1 38 38 H 1.09000 * 109.46783 * 179.97438 * 5 2 1 39 39 H 1.09000 * 109.46836 * 59.99627 * 6 5 2 40 40 H 1.09002 * 109.46699 * 300.00137 * 6 5 2 41 41 H 1.09006 * 109.46326 * 59.99750 * 7 6 5 42 42 H 1.08997 * 109.46866 * 300.00640 * 7 6 5 43 43 H 1.08002 * 120.03097 * 0.04058 * 13 12 11 44 44 H 1.09001 * 109.46927 * 239.99818 * 15 14 13 45 45 H 0.96705 * 113.99788 * 300.00011 * 16 15 14 46 46 H 1.07996 * 119.94384 * 179.72436 * 21 14 13 47 47 H 1.08002 * 120.03165 * 179.77344 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8783 -1.5212 5 6 2.4840 -0.8782 1.5211 6 6 1.9741 -2.3208 1.5211 7 6 2.4846 -3.0423 2.7700 8 16 1.8793 -4.7523 2.7704 9 8 2.4911 -5.4979 1.7268 10 8 0.4721 -4.7831 2.9651 11 8 2.4476 -5.3559 4.0467 12 6 1.8168 -4.9486 5.1794 13 6 0.7295 -5.6611 5.6635 14 6 0.0895 -5.2447 6.8150 15 6 -1.0922 -6.0179 7.3412 16 8 -0.8035 -6.4909 8.6584 17 14 -1.4337 -7.4679 6.2223 18 1 -2.5976 -8.2301 6.7412 19 1 -1.7334 -6.9768 4.8533 20 1 -0.2417 -8.3527 6.1809 21 6 0.5287 -4.1160 7.4817 22 6 1.6156 -3.4071 7.0040 23 6 2.0956 -2.1808 7.7368 24 9 3.1954 -1.6367 7.0647 25 9 1.0658 -1.2352 7.7878 26 9 2.4711 -2.5321 9.0378 27 6 2.2589 -3.8192 5.8533 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 3.5740 1.7565 -0.0005 32 1 2.1206 2.2703 -0.8900 33 1 2.1207 2.2703 0.8899 34 1 2.1206 -1.9058 -1.5212 35 1 2.1206 -0.3643 -2.4112 36 1 3.5740 -0.8779 -1.5214 37 1 2.1208 -0.3644 2.4111 38 1 3.5740 -0.8786 1.5208 39 1 2.3374 -2.8345 0.6311 40 1 0.8841 -2.3207 1.5211 41 1 2.1216 -2.5284 3.6602 42 1 3.5746 -3.0421 2.7696 43 1 0.3837 -6.5407 5.1409 44 1 -1.9669 -5.3683 7.3720 45 1 -0.0351 -7.0762 8.7066 46 1 0.0243 -3.7896 8.3791 47 1 3.1055 -3.2631 5.4786 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10339942_14927650.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:01:50 Heat of formation + Delta-G solvation = -302.742123 kcal Electronic energy + Delta-G solvation = -35004.481580 eV Core-core repulsion = 29796.032531 eV Total energy + Delta-G solvation = -5208.449049 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 400.099 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -51.27692 -48.79793 -48.72596 -42.58534 -40.13974 -38.53098 -37.68658 -37.41942 -35.89260 -33.81783 -32.14436 -29.62751 -28.46832 -28.30575 -28.27054 -27.49410 -27.23481 -24.94623 -23.14652 -22.62696 -21.66522 -19.95874 -19.69477 -19.59160 -19.14945 -18.60582 -18.42824 -18.06760 -17.71955 -17.02990 -16.66723 -16.30278 -16.01720 -15.81735 -15.62032 -15.47098 -15.15495 -15.09084 -14.87194 -14.86877 -14.79564 -14.48700 -14.42468 -14.15912 -14.04354 -14.01499 -13.95847 -13.65977 -13.60421 -13.57593 -13.49437 -13.41776 -13.35943 -13.15546 -13.05251 -12.99624 -12.98132 -12.93274 -12.36962 -12.18155 -11.92079 -11.89128 -11.82454 -10.79183 -10.71642 -10.68308 -10.62075 -10.43350 -10.29032 -1.29100 -0.62275 -0.37055 0.74754 1.02266 1.34457 1.44518 1.44931 1.78700 1.86094 1.91287 2.01014 2.01149 2.37114 2.50151 2.68095 2.73293 2.80157 3.12144 3.24795 3.35441 3.40004 3.53477 3.59273 3.62402 3.69383 3.77945 4.00099 4.14993 4.35887 4.42252 4.51182 4.57421 4.60287 4.64120 4.76162 4.78426 4.81597 4.83553 4.86775 4.87017 4.87470 4.88964 5.08996 5.18277 5.45510 5.59926 5.66672 5.67131 6.62451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.473 4.473 2 Si 1.068 2.932 3 C -0.464 4.464 4 C -0.474 4.474 5 C -0.410 4.410 6 C -0.121 4.121 7 C -0.626 4.626 8 S 2.570 3.430 9 O -0.962 6.962 10 O -0.972 6.972 11 O -0.664 6.664 12 C 0.058 3.942 13 C -0.085 4.085 14 C -0.097 4.097 15 C -0.063 4.063 16 O -0.540 6.540 17 Si 0.938 3.062 18 H -0.256 1.256 19 H -0.260 1.260 20 H -0.249 1.249 21 C -0.015 4.015 22 C -0.166 4.166 23 C 0.517 3.483 24 F -0.173 7.173 25 F -0.172 7.172 26 F -0.174 7.174 27 C -0.077 4.077 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.159 0.841 42 H 0.170 0.830 43 H 0.142 0.858 44 H 0.150 0.850 45 H 0.393 0.607 46 H 0.172 0.828 47 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.492 3.358 2.448 4.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.578 4.578 2 Si 1.260 2.740 3 C -0.571 4.571 4 C -0.580 4.580 5 C -0.496 4.496 6 C -0.160 4.160 7 C -0.758 4.758 8 S 2.671 3.329 9 O -0.960 6.960 10 O -0.970 6.970 11 O -0.623 6.623 12 C 0.016 3.984 13 C -0.105 4.105 14 C -0.098 4.098 15 C -0.175 4.175 16 O -0.347 6.347 17 Si 0.762 3.238 18 H -0.180 1.180 19 H -0.184 1.184 20 H -0.173 1.173 21 C -0.033 4.033 22 C -0.168 4.168 23 C 0.463 3.537 24 F -0.154 7.154 25 F -0.153 7.153 26 F -0.155 7.155 27 C -0.097 4.097 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.177 0.823 42 H 0.188 0.812 43 H 0.159 0.841 44 H 0.168 0.832 45 H 0.243 0.757 46 H 0.190 0.810 47 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -0.336 2.218 1.844 2.904 hybrid contribution 1.032 0.454 -0.247 1.154 sum 0.696 2.672 1.597 3.190 Atomic orbital electron populations 1.26416 1.22532 1.04417 1.04478 0.78307 0.65160 0.65355 0.65138 1.26288 1.06448 1.19964 1.04350 1.26440 1.06617 1.08370 1.16562 1.26218 1.07208 0.99324 1.16866 1.21235 1.02477 0.97849 0.94402 1.30813 1.15498 1.19449 1.10004 1.06116 0.74282 0.79119 0.73338 1.93618 1.77992 1.70117 1.54261 1.93631 1.32734 1.87230 1.83430 1.85748 1.70011 1.76862 1.29636 1.17767 0.95317 0.97379 0.87915 1.21652 0.93108 0.99591 0.96107 1.20301 0.98534 0.96826 0.94104 1.24823 0.97346 1.04261 0.91083 1.86543 1.53827 1.68905 1.25403 0.85829 0.81611 0.78106 0.78238 1.18014 1.18422 1.17259 1.21220 0.92150 0.91135 0.98836 1.19814 1.00880 0.97783 0.98313 1.17995 0.75309 0.83079 0.77311 1.93198 1.55005 1.87241 1.80001 1.93267 1.58786 1.66984 1.96290 1.93263 1.91538 1.91898 1.38796 1.21387 0.99949 0.94467 0.93867 0.90957 0.91614 0.91344 0.91133 0.91704 0.91079 0.91394 0.91612 0.91042 0.88745 0.88746 0.89522 0.89283 0.82297 0.81221 0.84082 0.83247 0.75738 0.81026 0.79870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 1.82 8.65 113.37 0.98 2.80 16 2 Si 1.07 -7.70 12.19 68.60 0.84 -6.86 16 3 C -0.46 2.16 8.65 113.37 0.98 3.14 16 4 C -0.47 1.66 8.65 113.37 0.98 2.64 16 5 C -0.41 3.30 4.45 71.98 0.32 3.62 16 6 C -0.12 0.65 4.59 30.59 0.14 0.79 16 7 C -0.63 3.99 5.46 71.98 0.39 4.38 16 8 S 2.57 7.61 5.17 -56.49 -0.29 7.31 16 9 O -0.96 -10.22 18.09 -118.57 -2.15 -12.37 16 10 O -0.97 -6.86 16.26 -118.57 -1.93 -8.79 16 11 O -0.66 -1.46 10.05 -61.52 -0.62 -2.07 16 12 C 0.06 0.01 4.80 22.51 0.11 0.12 16 13 C -0.08 -0.03 7.67 22.37 0.17 0.14 16 14 C -0.10 0.35 5.39 -19.88 -0.11 0.25 16 15 C -0.06 0.34 2.82 71.24 0.20 0.54 16 16 O -0.54 2.88 12.77 -148.98 -1.90 0.98 16 17 Si 0.94 -1.52 25.07 68.60 1.72 0.20 16 18 H -0.26 -0.18 7.11 99.48 0.71 0.52 16 19 H -0.26 -0.61 7.11 99.48 0.71 0.10 16 20 H -0.25 0.33 7.11 99.48 0.71 1.03 16 21 C -0.01 0.08 9.16 22.28 0.20 0.28 16 22 C -0.17 0.72 5.37 -19.88 -0.11 0.61 16 23 C 0.52 -1.66 3.32 71.23 0.24 -1.43 16 24 F -0.17 0.56 15.97 44.97 0.72 1.28 16 25 F -0.17 0.32 17.23 44.97 0.77 1.09 16 26 F -0.17 0.19 17.24 44.97 0.78 0.97 16 27 C -0.08 0.34 7.84 22.37 0.18 0.52 16 28 H 0.07 -0.31 7.96 -2.39 -0.02 -0.32 16 29 H 0.06 -0.19 7.96 -2.39 -0.02 -0.21 16 30 H 0.07 -0.24 7.79 -2.39 -0.02 -0.25 16 31 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 32 H 0.06 -0.22 7.96 -2.38 -0.02 -0.24 16 33 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 34 H 0.07 -0.20 7.79 -2.39 -0.02 -0.22 16 35 H 0.06 -0.17 7.96 -2.38 -0.02 -0.19 16 36 H 0.07 -0.27 7.96 -2.38 -0.02 -0.29 16 37 H 0.09 -0.93 7.96 -2.39 -0.02 -0.95 16 38 H 0.09 -0.92 7.96 -2.39 -0.02 -0.94 16 39 H 0.09 -0.51 7.79 -2.39 -0.02 -0.52 16 40 H 0.09 -0.57 7.79 -2.39 -0.02 -0.59 16 41 H 0.16 -1.75 6.60 -2.39 -0.02 -1.77 16 42 H 0.17 -1.94 8.14 -2.39 -0.02 -1.96 16 43 H 0.14 0.12 4.88 -2.91 -0.01 0.11 16 44 H 0.15 -1.31 7.96 -2.39 -0.02 -1.33 16 45 H 0.39 -4.46 8.70 -74.05 -0.64 -5.11 16 46 H 0.17 -1.47 8.06 -2.91 -0.02 -1.49 16 47 H 0.18 -1.85 6.59 -2.91 -0.02 -1.87 16 Total: 0.00 -20.81 411.95 3.74 -17.07 By element: Atomic # 1 Polarization: -18.32 SS G_CDS: 1.12 Total: -17.20 kcal Atomic # 6 Polarization: 13.71 SS G_CDS: 4.68 Total: 18.39 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -6.59 Total: -22.25 kcal Atomic # 9 Polarization: 1.07 SS G_CDS: 2.27 Total: 3.34 kcal Atomic # 14 Polarization: -9.22 SS G_CDS: 2.56 Total: -6.66 kcal Atomic # 16 Polarization: 7.61 SS G_CDS: -0.29 Total: 7.31 kcal Total: -20.81 3.74 -17.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10339942_14927650.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -285.669 kcal (2) G-P(sol) polarization free energy of solvation -20.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -306.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -302.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds