Wall clock time and date at job start Mon Mar 8 2021 08:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.45205 * 109.46775 * 2 1 4 4 C 1.34227 * 116.99613 * 180.02562 * 3 2 1 5 5 O 1.20832 * 119.99737 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00242 * 180.02562 * 4 3 2 7 7 H 1.09003 * 112.84597 * 48.80438 * 6 4 3 8 8 C 1.53783 * 113.61579 * 180.02562 * 6 4 3 9 9 C 1.53783 * 87.07958 * 89.19998 * 8 6 4 10 10 F 1.39894 * 113.61703 * 270.79851 * 9 8 6 11 11 C 1.53007 * 113.61122 * 139.97990 * 9 8 6 12 12 S 1.81403 * 109.46732 * 186.53032 * 11 9 8 13 13 O 1.42094 * 110.54387 * 68.37632 * 12 11 9 14 14 O 1.42096 * 110.54113 * 291.62257 * 12 11 9 15 15 O 1.52197 * 104.44743 * 180.02562 * 12 11 9 16 16 C 1.35900 * 114.00318 * 74.99559 * 15 12 11 17 17 C 1.38709 * 120.05786 * 269.98143 * 16 15 12 18 18 C 1.38171 * 119.94081 * 179.97438 * 17 16 15 19 19 C 1.50702 * 119.96884 * 180.02562 * 18 17 16 20 20 F 1.39899 * 109.47071 * 270.00135 * 19 18 17 21 21 F 1.39901 * 109.47246 * 30.00059 * 19 18 17 22 22 F 1.39899 * 109.47068 * 149.99595 * 19 18 17 23 23 C 1.38245 * 120.05709 * 0.02562 * 18 17 16 24 24 C 1.38285 * 120.11144 * 0.02562 * 23 18 17 25 25 C 1.50699 * 119.96790 * 179.97438 * 24 23 18 26 26 O 1.42899 * 109.47351 * 64.99992 * 25 24 23 27 27 Si 1.86304 * 109.46865 * 184.99858 * 25 24 23 28 28 C 1.38120 * 120.05710 * 359.97438 * 24 23 18 29 29 C 1.53781 * 87.17519 * 25.39137 * 9 8 6 30 30 H 1.08998 * 109.46852 * 59.99354 * 1 2 3 31 31 H 1.08993 * 109.46985 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46974 * 299.99615 * 1 2 3 33 33 H 1.08997 * 109.46745 * 240.00505 * 2 1 3 34 34 H 1.08992 * 109.47169 * 120.00344 * 2 1 3 35 35 H 1.08993 * 113.61411 * 334.64838 * 8 6 4 36 36 H 1.09003 * 113.68826 * 203.76068 * 8 6 4 37 37 H 1.08995 * 109.46981 * 66.53339 * 11 9 8 38 38 H 1.08998 * 109.46889 * 306.52791 * 11 9 8 39 39 H 1.07998 * 120.02674 * 0.04238 * 17 16 15 40 40 H 1.08000 * 119.93675 * 180.27435 * 23 18 17 41 41 H 1.09000 * 109.47353 * 304.99592 * 25 24 23 42 42 H 0.96693 * 114.00159 * 179.97438 * 26 25 24 43 43 H 1.48491 * 110.00003 * 300.00096 * 27 25 24 44 44 H 1.48496 * 109.99691 * 61.32190 * 27 25 24 45 45 H 1.08001 * 120.02657 * 180.02562 * 28 24 23 46 46 H 1.09000 * 113.61424 * 89.15238 * 29 9 8 47 47 H 1.08995 * 113.61399 * 220.06378 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0015 6 6 3.9208 2.9374 0.0000 7 1 3.4716 3.5809 0.7565 8 6 5.4583 2.9680 -0.0013 9 6 5.3790 2.9462 -1.5370 10 9 5.3579 1.6566 -2.0788 11 6 6.4015 3.8595 -2.2165 12 16 6.0857 3.8972 -4.0024 13 8 4.8623 4.5653 -4.2784 14 8 6.3800 2.6361 -4.5875 15 8 7.1552 4.8267 -4.5576 16 6 8.3949 4.2726 -4.6125 17 6 9.2567 4.3897 -3.5319 18 6 10.5164 3.8250 -3.5901 19 6 11.4530 3.9514 -2.4163 20 9 12.2222 5.1115 -2.5562 21 9 10.7104 4.0241 -1.2328 22 9 12.2959 2.8357 -2.3700 23 6 10.9183 3.1442 -4.7242 24 6 10.0614 3.0270 -5.8032 25 6 10.5030 2.2846 -7.0380 26 8 10.7022 0.9059 -6.7193 27 14 9.1932 2.4346 -8.3544 28 6 8.8011 3.5897 -5.7500 29 6 3.9844 3.5790 -1.3981 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 5.9132 2.0741 0.4252 36 1 5.8783 3.8899 0.4012 37 1 7.4064 3.4794 -2.0332 38 1 6.3145 4.8674 -1.8107 39 1 8.9430 4.9209 -2.6455 40 1 11.9017 2.6997 -4.7659 41 1 11.4367 2.7115 -7.4042 42 1 10.9877 0.3662 -7.4691 43 1 7.9152 1.8562 -7.8675 44 1 8.9993 3.8614 -8.7176 45 1 8.1321 3.4975 -6.5928 46 1 3.9994 4.6687 -1.3780 47 1 3.2511 3.1775 -2.0974 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_10339942_15494190.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:06:56 Heat of formation + Delta-G solvation = -340.416381 kcal Electronic energy + Delta-G solvation = -44293.228129 eV Core-core repulsion = 37844.543864 eV Total energy + Delta-G solvation = -6448.684265 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 443.088 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -51.36710 -49.08524 -48.88050 -48.81199 -42.71144 -41.76822 -40.21453 -39.37064 -38.48669 -37.81081 -37.38782 -37.34958 -34.10130 -32.86930 -32.42075 -32.02200 -27.69822 -27.49636 -27.44143 -26.72730 -25.04728 -24.03979 -23.05032 -22.58486 -21.73978 -20.72629 -19.95567 -19.77923 -19.69145 -19.33392 -18.95823 -18.66643 -18.54817 -18.39389 -18.16405 -17.79510 -17.58632 -17.31475 -17.16346 -16.76060 -16.31370 -16.13527 -15.93471 -15.71021 -15.56479 -15.49619 -15.23919 -15.17958 -14.98479 -14.95211 -14.88097 -14.71639 -14.69152 -14.61585 -14.37958 -14.23340 -13.90305 -13.85191 -13.72552 -13.63133 -13.52565 -13.42875 -13.34629 -13.29735 -13.27358 -12.97890 -12.94422 -12.55913 -12.49995 -12.43376 -12.12027 -11.83582 -11.53283 -11.49966 -11.42035 -10.89222 -10.66252 -10.43269 -5.15909 -1.45932 -0.77548 -0.53275 0.61643 1.01980 1.12475 1.33176 1.48283 1.53058 1.64802 1.83841 2.16017 2.37323 2.48260 2.52790 2.63672 2.64202 2.82037 2.87865 3.03980 3.11856 3.12883 3.17590 3.30275 3.37278 3.45955 3.57771 3.65200 3.70518 3.74956 3.90485 3.97369 4.01259 4.12765 4.13643 4.19213 4.27215 4.31183 4.33949 4.35742 4.41510 4.43946 4.59674 4.62743 4.71626 4.81896 4.83777 5.00239 5.02814 5.45974 6.40388 6.73488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 O -0.354 6.354 4 C 0.473 3.527 5 O -0.488 6.488 6 C -0.111 4.111 7 H 0.132 0.868 8 C -0.123 4.123 9 C 0.096 3.904 10 F -0.164 7.164 11 C -0.673 4.673 12 S 2.584 3.416 13 O -0.906 6.906 14 O -0.927 6.927 15 O -0.657 6.657 16 C 0.074 3.926 17 C -0.081 4.081 18 C -0.164 4.164 19 C 0.515 3.485 20 F -0.168 7.168 21 F -0.173 7.173 22 F -0.167 7.167 23 C -0.020 4.020 24 C -0.053 4.053 25 C -0.073 4.073 26 O -0.540 6.540 27 Si 0.674 3.326 28 C -0.063 4.063 29 C -0.149 4.149 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.106 0.894 36 H 0.122 0.878 37 H 0.151 0.849 38 H 0.165 0.835 39 H 0.160 0.840 40 H 0.158 0.842 41 H 0.089 0.911 42 H 0.390 0.610 43 H -0.236 1.236 44 H -0.248 1.248 45 H 0.147 0.853 46 H 0.130 0.870 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.173 1.920 -1.054 3.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 O -0.271 6.271 4 C 0.314 3.686 5 O -0.374 6.374 6 C -0.130 4.130 7 H 0.150 0.850 8 C -0.161 4.161 9 C 0.076 3.924 10 F -0.144 7.144 11 C -0.798 4.798 12 S 2.678 3.322 13 O -0.904 6.904 14 O -0.925 6.925 15 O -0.615 6.615 16 C 0.032 3.968 17 C -0.102 4.102 18 C -0.166 4.166 19 C 0.460 3.540 20 F -0.149 7.149 21 F -0.154 7.154 22 F -0.148 7.148 23 C -0.039 4.039 24 C -0.053 4.053 25 C -0.183 4.183 26 O -0.347 6.347 27 Si 0.573 3.427 28 C -0.082 4.082 29 C -0.186 4.186 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.125 0.875 36 H 0.140 0.860 37 H 0.169 0.831 38 H 0.183 0.817 39 H 0.177 0.823 40 H 0.176 0.824 41 H 0.107 0.893 42 H 0.238 0.762 43 H -0.160 1.160 44 H -0.172 1.172 45 H 0.164 0.836 46 H 0.148 0.852 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.047 2.183 -1.348 2.771 hybrid contribution 0.480 0.149 1.334 1.425 sum 1.526 2.332 -0.014 2.788 Atomic orbital electron populations 1.21827 0.92205 1.03332 1.03697 1.23127 0.95649 0.79542 1.02942 1.86474 1.23815 1.33032 1.83809 1.22851 0.81083 0.91562 0.73081 1.90725 1.60383 1.42462 1.43799 1.22001 0.97534 0.92300 1.01149 0.84978 1.23556 0.93742 1.06498 0.92310 1.21434 0.95310 0.79500 0.96109 1.93053 1.97101 1.37697 1.86543 1.31358 1.10184 1.10089 1.28195 1.05940 0.74807 0.74130 0.77361 1.93686 1.40364 1.73800 1.82577 1.93719 1.82631 1.43638 1.72539 1.85798 1.28007 1.62328 1.85397 1.17510 0.82541 1.00551 0.96197 1.21080 0.92459 0.97906 0.98710 1.19814 0.95118 1.05596 0.96027 1.17970 0.79465 0.74479 0.82064 1.93278 1.76603 1.49349 1.95720 1.93220 1.76465 1.96034 1.49672 1.93251 1.72543 1.52493 1.96522 1.21102 1.00828 0.92231 0.89714 1.19227 0.92368 0.97717 0.96028 1.24620 1.08948 0.85139 0.99638 1.86493 1.91348 1.16887 1.39978 0.95073 0.79165 0.84092 0.84326 1.21339 0.95961 0.93827 0.97085 1.23898 0.95197 1.03347 0.96183 0.91292 0.89914 0.91347 0.90910 0.90969 0.87509 0.85965 0.83076 0.81721 0.82274 0.82396 0.89336 0.76175 1.16030 1.17216 0.83583 0.85160 0.87973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.15 10.29 37.16 0.38 0.53 16 2 C 0.06 0.07 6.19 37.16 0.23 0.30 16 3 O -0.35 -0.86 10.22 -39.25 -0.40 -1.27 16 4 C 0.47 1.36 6.93 36.00 0.25 1.61 16 5 O -0.49 -2.83 14.48 -18.75 -0.27 -3.10 16 6 C -0.11 0.09 4.46 -90.87 -0.40 -0.32 16 7 H 0.13 -0.49 8.14 -51.93 -0.42 -0.91 16 8 C -0.12 0.18 6.93 -25.92 -0.18 0.00 16 9 C 0.10 0.07 1.55 -89.80 -0.14 -0.07 16 10 F -0.16 -0.80 14.91 2.25 0.03 -0.76 16 11 C -0.67 1.01 5.11 37.16 0.19 1.20 16 12 S 2.58 7.00 4.91 -107.50 -0.53 6.47 16 13 O -0.91 -4.27 17.84 -67.03 -1.20 -5.46 16 14 O -0.93 -5.37 15.85 -67.04 -1.06 -6.43 16 15 O -0.66 -1.23 10.05 -51.75 -0.52 -1.75 16 16 C 0.07 0.13 4.80 -39.21 -0.19 -0.06 16 17 C -0.08 0.04 7.81 -39.43 -0.31 -0.27 16 18 C -0.16 0.03 5.45 -104.64 -0.57 -0.54 16 19 C 0.51 -0.03 3.36 36.01 0.12 0.09 16 20 F -0.17 -0.07 17.30 2.25 0.04 -0.04 16 21 F -0.17 0.02 16.46 2.25 0.04 0.06 16 22 F -0.17 -0.11 16.46 2.25 0.04 -0.07 16 23 C -0.02 0.00 9.04 -39.56 -0.36 -0.35 16 24 C -0.05 -0.04 5.38 -104.65 -0.56 -0.60 16 25 C -0.07 0.12 2.79 36.01 0.10 0.22 16 26 O -0.54 0.72 12.81 -35.23 -0.45 0.27 16 27 Si 0.67 -1.04 29.85 -169.99 -5.07 -6.12 16 28 C -0.06 -0.14 7.67 -39.43 -0.30 -0.45 16 29 C -0.15 0.12 6.79 -25.82 -0.18 -0.06 16 30 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 31 H 0.08 -0.18 8.14 -51.93 -0.42 -0.61 16 32 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 33 H 0.07 0.11 8.13 -51.93 -0.42 -0.31 16 34 H 0.07 0.07 8.13 -51.93 -0.42 -0.36 16 35 H 0.11 0.02 7.43 -51.93 -0.39 -0.37 16 36 H 0.12 -0.61 8.10 -51.93 -0.42 -1.03 16 37 H 0.15 -0.46 6.60 -51.93 -0.34 -0.81 16 38 H 0.16 -0.97 8.09 -51.92 -0.42 -1.39 16 39 H 0.16 -0.60 7.04 -52.49 -0.37 -0.97 16 40 H 0.16 -0.32 7.59 -52.49 -0.40 -0.72 16 41 H 0.09 -0.39 7.96 -51.93 -0.41 -0.80 16 42 H 0.39 -2.47 8.74 45.56 0.40 -2.07 16 43 H -0.24 -0.58 7.05 56.52 0.40 -0.18 16 44 H -0.25 -0.10 7.11 56.52 0.40 0.30 16 45 H 0.15 0.35 4.87 -52.49 -0.26 0.10 16 46 H 0.13 -0.52 8.06 -51.93 -0.42 -0.94 16 47 H 0.10 0.02 8.10 -51.93 -0.42 -0.40 16 LS Contribution 421.26 15.07 6.35 6.35 Total: 0.00 -12.96 421.26 -10.11 -23.07 By element: Atomic # 1 Polarization: -7.26 SS G_CDS: -5.18 Total: -12.44 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -1.92 Total: 1.22 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: -3.90 Total: -17.74 kcal Atomic # 9 Polarization: -0.96 SS G_CDS: 0.15 Total: -0.81 kcal Atomic # 14 Polarization: -1.04 SS G_CDS: -5.07 Total: -6.12 kcal Atomic # 16 Polarization: 7.00 SS G_CDS: -0.53 Total: 6.47 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -12.96 -10.11 -23.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10339942_15494190.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -317.346 kcal (2) G-P(sol) polarization free energy of solvation -12.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -330.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -340.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds