Wall clock time and date at job start Mon Mar 8 2021 08:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.45205 * 109.46775 * 2 1 4 4 C 1.34227 * 116.99613 * 180.02562 * 3 2 1 5 5 O 1.20832 * 119.99737 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00242 * 180.02562 * 4 3 2 7 7 H 1.09003 * 112.84597 * 48.80438 * 6 4 3 8 8 C 1.53783 * 113.61579 * 180.02562 * 6 4 3 9 9 C 1.53783 * 87.07958 * 89.19998 * 8 6 4 10 10 F 1.39894 * 113.61703 * 270.79851 * 9 8 6 11 11 C 1.53007 * 113.61122 * 139.97990 * 9 8 6 12 12 S 1.81403 * 109.46732 * 186.53032 * 11 9 8 13 13 O 1.42094 * 110.54387 * 68.37632 * 12 11 9 14 14 O 1.42096 * 110.54113 * 291.62257 * 12 11 9 15 15 O 1.52197 * 104.44743 * 180.02562 * 12 11 9 16 16 C 1.35900 * 114.00318 * 74.99559 * 15 12 11 17 17 C 1.38709 * 120.05786 * 269.98143 * 16 15 12 18 18 C 1.38171 * 119.94081 * 179.97438 * 17 16 15 19 19 C 1.50702 * 119.96884 * 180.02562 * 18 17 16 20 20 F 1.39899 * 109.47071 * 270.00135 * 19 18 17 21 21 F 1.39901 * 109.47246 * 30.00059 * 19 18 17 22 22 F 1.39899 * 109.47068 * 149.99595 * 19 18 17 23 23 C 1.38245 * 120.05709 * 0.02562 * 18 17 16 24 24 C 1.38285 * 120.11144 * 0.02562 * 23 18 17 25 25 C 1.50699 * 119.96790 * 179.97438 * 24 23 18 26 26 O 1.42899 * 109.47351 * 64.99992 * 25 24 23 27 27 Si 1.86304 * 109.46865 * 184.99858 * 25 24 23 28 28 C 1.38120 * 120.05710 * 359.97438 * 24 23 18 29 29 C 1.53781 * 87.17519 * 25.39137 * 9 8 6 30 30 H 1.08998 * 109.46852 * 59.99354 * 1 2 3 31 31 H 1.08993 * 109.46985 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46974 * 299.99615 * 1 2 3 33 33 H 1.08997 * 109.46745 * 240.00505 * 2 1 3 34 34 H 1.08992 * 109.47169 * 120.00344 * 2 1 3 35 35 H 1.08993 * 113.61411 * 334.64838 * 8 6 4 36 36 H 1.09003 * 113.68826 * 203.76068 * 8 6 4 37 37 H 1.08995 * 109.46981 * 66.53339 * 11 9 8 38 38 H 1.08998 * 109.46889 * 306.52791 * 11 9 8 39 39 H 1.07998 * 120.02674 * 0.04238 * 17 16 15 40 40 H 1.08000 * 119.93675 * 180.27435 * 23 18 17 41 41 H 1.09000 * 109.47353 * 304.99592 * 25 24 23 42 42 H 0.96693 * 114.00159 * 179.97438 * 26 25 24 43 43 H 1.48491 * 110.00003 * 300.00096 * 27 25 24 44 44 H 1.48496 * 109.99691 * 61.32190 * 27 25 24 45 45 H 1.08001 * 120.02657 * 180.02562 * 28 24 23 46 46 H 1.09000 * 113.61424 * 89.15238 * 29 9 8 47 47 H 1.08995 * 113.61399 * 220.06378 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0015 6 6 3.9208 2.9374 0.0000 7 1 3.4716 3.5809 0.7565 8 6 5.4583 2.9680 -0.0013 9 6 5.3790 2.9462 -1.5370 10 9 5.3579 1.6566 -2.0788 11 6 6.4015 3.8595 -2.2165 12 16 6.0857 3.8972 -4.0024 13 8 4.8623 4.5653 -4.2784 14 8 6.3800 2.6361 -4.5875 15 8 7.1552 4.8267 -4.5576 16 6 8.3949 4.2726 -4.6125 17 6 9.2567 4.3897 -3.5319 18 6 10.5164 3.8250 -3.5901 19 6 11.4530 3.9514 -2.4163 20 9 12.2222 5.1115 -2.5562 21 9 10.7104 4.0241 -1.2328 22 9 12.2959 2.8357 -2.3700 23 6 10.9183 3.1442 -4.7242 24 6 10.0614 3.0270 -5.8032 25 6 10.5030 2.2846 -7.0380 26 8 10.7022 0.9059 -6.7193 27 14 9.1932 2.4346 -8.3544 28 6 8.8011 3.5897 -5.7500 29 6 3.9844 3.5790 -1.3981 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 5.9132 2.0741 0.4252 36 1 5.8783 3.8899 0.4012 37 1 7.4064 3.4794 -2.0332 38 1 6.3145 4.8674 -1.8107 39 1 8.9430 4.9209 -2.6455 40 1 11.9017 2.6997 -4.7659 41 1 11.4367 2.7115 -7.4042 42 1 10.9877 0.3662 -7.4691 43 1 7.9152 1.8562 -7.8675 44 1 8.9993 3.8614 -8.7176 45 1 8.1321 3.4975 -6.5928 46 1 3.9994 4.6687 -1.3780 47 1 3.2511 3.1775 -2.0974 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10339942_15494190.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:06:54 Heat of formation + Delta-G solvation = -343.418026 kcal Electronic energy + Delta-G solvation = -44293.358290 eV Core-core repulsion = 37844.543864 eV Total energy + Delta-G solvation = -6448.814426 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 443.088 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -51.34072 -49.22708 -48.84997 -48.79249 -42.75983 -41.90456 -40.21844 -39.37178 -38.72799 -37.71577 -37.60916 -37.55619 -34.07275 -32.90014 -32.41453 -31.98837 -27.68486 -27.41262 -27.29663 -26.73872 -25.09521 -24.06618 -23.05333 -22.64111 -21.80044 -20.75652 -20.00903 -19.76945 -19.66414 -19.43415 -19.02595 -18.70144 -18.52138 -18.40940 -18.17154 -17.92400 -17.59060 -17.35849 -17.23711 -16.80945 -16.44694 -16.21995 -15.87768 -15.68955 -15.52707 -15.46604 -15.26471 -15.21236 -14.96338 -14.93750 -14.92200 -14.80924 -14.70815 -14.66194 -14.38338 -14.18521 -13.95770 -13.82734 -13.77061 -13.70850 -13.61206 -13.52735 -13.41054 -13.32051 -13.29105 -13.02678 -12.92164 -12.60088 -12.51231 -12.47275 -12.15293 -11.76567 -11.64856 -11.59888 -11.49358 -10.90168 -10.62490 -10.32597 -5.12127 -1.56556 -0.77716 -0.54331 0.52487 0.96278 1.10640 1.35184 1.49088 1.49603 1.65074 1.87583 2.08481 2.39395 2.42438 2.62011 2.68763 2.69331 2.88878 2.92879 3.13425 3.13981 3.18300 3.24002 3.38223 3.44562 3.48482 3.60141 3.75157 3.76355 3.84780 3.89210 3.96665 4.09005 4.22301 4.23706 4.28558 4.34999 4.38078 4.46368 4.47530 4.50724 4.56939 4.64601 4.72985 4.77485 4.82657 4.96541 5.02067 5.06697 5.35639 6.56409 6.83588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 O -0.359 6.359 4 C 0.463 3.537 5 O -0.527 6.527 6 C -0.111 4.111 7 H 0.170 0.830 8 C -0.109 4.109 9 C 0.067 3.933 10 F -0.198 7.198 11 C -0.647 4.647 12 S 2.569 3.431 13 O -0.940 6.940 14 O -0.975 6.975 15 O -0.656 6.656 16 C 0.054 3.946 17 C -0.074 4.074 18 C -0.166 4.166 19 C 0.521 3.479 20 F -0.170 7.170 21 F -0.170 7.170 22 F -0.171 7.171 23 C -0.016 4.016 24 C -0.066 4.066 25 C -0.068 4.068 26 O -0.557 6.557 27 Si 0.747 3.253 28 C -0.093 4.093 29 C -0.150 4.150 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.172 0.828 37 H 0.172 0.828 38 H 0.221 0.779 39 H 0.196 0.804 40 H 0.178 0.822 41 H 0.127 0.873 42 H 0.411 0.589 43 H -0.305 1.305 44 H -0.278 1.278 45 H 0.129 0.871 46 H 0.171 0.829 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.867 3.780 1.099 5.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.020 4.020 3 O -0.276 6.276 4 C 0.306 3.694 5 O -0.416 6.416 6 C -0.129 4.129 7 H 0.188 0.812 8 C -0.147 4.147 9 C 0.047 3.953 10 F -0.179 7.179 11 C -0.777 4.777 12 S 2.669 3.331 13 O -0.938 6.938 14 O -0.974 6.974 15 O -0.615 6.615 16 C 0.012 3.988 17 C -0.094 4.094 18 C -0.168 4.168 19 C 0.467 3.533 20 F -0.151 7.151 21 F -0.151 7.151 22 F -0.152 7.152 23 C -0.035 4.035 24 C -0.067 4.067 25 C -0.179 4.179 26 O -0.368 6.368 27 Si 0.654 3.346 28 C -0.113 4.113 29 C -0.188 4.188 30 H 0.086 0.914 31 H 0.115 0.885 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.190 0.810 37 H 0.189 0.811 38 H 0.238 0.762 39 H 0.213 0.787 40 H 0.196 0.804 41 H 0.145 0.855 42 H 0.263 0.737 43 H -0.233 1.233 44 H -0.204 1.204 45 H 0.146 0.854 46 H 0.189 0.811 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.745 4.035 0.720 4.933 hybrid contribution -0.122 -0.461 0.696 0.844 sum 2.623 3.574 1.416 4.654 Atomic orbital electron populations 1.21828 0.90386 1.04354 1.03858 1.23268 0.97132 0.79290 1.02350 1.86490 1.24027 1.33498 1.83558 1.23813 0.80833 0.93006 0.71722 1.90702 1.61052 1.44138 1.45687 1.22193 0.98289 0.90240 1.02220 0.81248 1.23708 0.93061 1.08018 0.89917 1.22033 0.96942 0.78412 0.97933 1.92987 1.97320 1.40336 1.87232 1.31251 1.10736 1.13052 1.22619 1.06068 0.74386 0.73059 0.79562 1.93635 1.41942 1.73949 1.84271 1.93663 1.83067 1.45537 1.75120 1.85756 1.28143 1.61635 1.85959 1.17748 0.82712 1.01379 0.96928 1.21408 0.91786 0.97191 0.98981 1.19915 0.95267 1.05529 0.96096 1.17858 0.79263 0.74228 0.81992 1.93278 1.76681 1.49450 1.95735 1.93223 1.76355 1.96005 1.49500 1.93246 1.72700 1.52753 1.96539 1.21351 1.01351 0.91607 0.89184 1.19524 0.91901 0.97836 0.97408 1.24580 1.10045 0.85371 0.97895 1.86445 1.91524 1.17128 1.41726 0.94496 0.76402 0.80617 0.83058 1.21512 0.96836 0.95413 0.97498 1.24107 0.93684 1.05479 0.95491 0.91443 0.88495 0.90758 0.92154 0.91002 0.89455 0.81000 0.81065 0.76182 0.78703 0.80431 0.85503 0.73689 1.23321 1.20445 0.85394 0.81147 0.90110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.19 10.29 71.99 0.74 0.94 16 2 C 0.05 0.22 6.19 71.99 0.45 0.66 16 3 O -0.36 -2.17 10.22 -51.39 -0.53 -2.70 16 4 C 0.46 3.11 6.93 71.23 0.49 3.61 16 5 O -0.53 -7.25 14.48 21.95 0.32 -6.94 16 6 C -0.11 0.34 4.46 -10.95 -0.05 0.29 16 7 H 0.17 -1.83 8.14 -2.39 -0.02 -1.85 16 8 C -0.11 0.57 6.93 31.12 0.22 0.79 16 9 C 0.07 0.04 1.55 -10.26 -0.02 0.02 16 10 F -0.20 -2.37 14.91 44.97 0.67 -1.70 16 11 C -0.65 3.18 5.11 71.98 0.37 3.54 16 12 S 2.57 17.66 4.91 -56.49 -0.28 17.38 16 13 O -0.94 -10.63 17.84 -118.57 -2.12 -12.74 16 14 O -0.98 -14.90 15.85 -118.57 -1.88 -16.78 16 15 O -0.66 -3.23 10.05 -61.52 -0.62 -3.85 16 16 C 0.05 0.23 4.80 22.51 0.11 0.34 16 17 C -0.07 0.16 7.81 22.37 0.17 0.33 16 18 C -0.17 0.26 5.45 -19.88 -0.11 0.16 16 19 C 0.52 -1.03 3.36 71.24 0.24 -0.79 16 20 F -0.17 0.16 17.30 44.97 0.78 0.94 16 21 F -0.17 0.46 16.46 44.97 0.74 1.21 16 22 F -0.17 0.04 16.46 44.97 0.74 0.78 16 23 C -0.02 0.02 9.04 22.28 0.20 0.22 16 24 C -0.07 -0.13 5.38 -19.88 -0.11 -0.24 16 25 C -0.07 0.23 2.79 71.24 0.20 0.43 16 26 O -0.56 1.63 12.81 -148.98 -1.91 -0.28 16 27 Si 0.75 -0.60 29.85 68.60 2.05 1.45 16 28 C -0.09 -0.63 7.67 22.37 0.17 -0.46 16 29 C -0.15 0.41 6.79 31.18 0.21 0.62 16 30 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 31 H 0.10 -0.41 8.14 -2.39 -0.02 -0.43 16 32 H 0.07 -0.17 8.14 -2.38 -0.02 -0.19 16 33 H 0.06 0.36 8.13 -2.39 -0.02 0.34 16 34 H 0.07 0.26 8.13 -2.39 -0.02 0.24 16 35 H 0.09 -0.03 7.43 -2.39 -0.02 -0.05 16 36 H 0.17 -2.68 8.10 -2.39 -0.02 -2.70 16 37 H 0.17 -1.48 6.60 -2.39 -0.02 -1.49 16 38 H 0.22 -3.69 8.09 -2.39 -0.02 -3.71 16 39 H 0.20 -2.09 7.04 -2.91 -0.02 -2.11 16 40 H 0.18 -1.03 7.59 -2.91 -0.02 -1.05 16 41 H 0.13 -1.36 7.96 -2.39 -0.02 -1.38 16 42 H 0.41 -5.51 8.74 -74.06 -0.65 -6.16 16 43 H -0.30 -3.17 7.05 99.48 0.70 -2.47 16 44 H -0.28 -1.02 7.11 99.48 0.71 -0.32 16 45 H 0.13 1.18 4.87 -2.91 -0.01 1.16 16 46 H 0.17 -1.94 8.06 -2.39 -0.02 -1.96 16 47 H 0.08 0.15 8.10 -2.39 -0.02 0.13 16 Total: 0.00 -38.54 421.26 1.72 -36.83 By element: Atomic # 1 Polarization: -24.52 SS G_CDS: 0.46 Total: -24.06 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: 3.29 Total: 10.46 kcal Atomic # 8 Polarization: -36.56 SS G_CDS: -6.73 Total: -43.28 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 2.93 Total: 1.22 kcal Atomic # 14 Polarization: -0.60 SS G_CDS: 2.05 Total: 1.45 kcal Atomic # 16 Polarization: 17.66 SS G_CDS: -0.28 Total: 17.38 kcal Total: -38.54 1.72 -36.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10339942_15494190.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -306.590 kcal (2) G-P(sol) polarization free energy of solvation -38.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -345.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -343.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds