Wall clock time and date at job start Mon Mar 8 2021 08:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86297 * 109.46720 * 2 1 4 4 C 1.50700 * 109.47108 * 119.99588 * 2 1 3 5 5 C 1.38125 * 119.97292 * 245.25978 * 4 2 1 6 6 C 1.38752 * 119.94137 * 180.25336 * 5 4 2 7 7 O 1.35895 * 120.05781 * 179.73900 * 6 5 4 8 8 S 1.52194 * 114.00406 * 269.73113 * 7 6 5 9 9 O 1.42102 * 104.27516 * 318.92459 * 8 7 6 10 10 O 1.42104 * 104.28020 * 191.06919 * 8 7 6 11 11 C 1.81396 * 104.45117 * 74.99695 * 8 7 6 12 12 H 1.09003 * 112.85269 * 311.19765 * 11 8 7 13 13 C 1.54054 * 113.62216 * 82.50428 * 11 8 7 14 14 C 1.53782 * 86.98558 * 139.98188 * 13 11 8 15 15 H 1.08999 * 113.61385 * 219.98389 * 14 13 11 16 16 O 1.42899 * 113.61491 * 89.16290 * 14 13 11 17 17 C 1.42903 * 113.99629 * 110.86418 * 16 14 13 18 18 C 1.50701 * 109.46878 * 179.97438 * 17 16 14 19 19 C 1.38233 * 120.00099 * 269.72733 * 18 17 16 20 20 C 1.38234 * 119.99645 * 179.78840 * 19 18 17 21 21 C 1.38230 * 120.00350 * 0.44086 * 20 19 18 22 22 C 1.38238 * 119.99911 * 359.81385 * 21 20 19 23 23 C 1.38234 * 120.00093 * 359.97438 * 22 21 20 24 24 C 1.53780 * 87.17314 * 334.57258 * 14 13 11 25 25 C 1.38716 * 119.88891 * 359.47127 * 6 5 4 26 26 C 1.38161 * 119.94561 * 0.27296 * 25 6 5 27 27 C 1.50701 * 119.97654 * 179.97438 * 26 25 6 28 28 F 1.39901 * 109.46908 * 0.02562 * 27 26 25 29 29 F 1.39902 * 109.47389 * 119.99875 * 27 26 25 30 30 F 1.39898 * 109.47170 * 240.00159 * 27 26 25 31 31 C 1.38248 * 120.05344 * 0.02562 * 26 25 6 32 32 H 0.96701 * 114.00174 * 300.00052 * 1 2 3 33 33 H 1.08997 * 109.47471 * 240.00033 * 2 1 3 34 34 H 1.48505 * 109.99998 * 178.68062 * 3 2 1 35 35 H 1.48495 * 110.00330 * 299.99982 * 3 2 1 36 36 H 1.07995 * 120.02724 * 0.02562 * 5 4 2 37 37 H 1.09003 * 113.60892 * 25.47669 * 13 11 8 38 38 H 1.08995 * 113.69702 * 254.49842 * 13 11 8 39 39 H 1.09002 * 109.47382 * 59.99956 * 17 16 14 40 40 H 1.09001 * 109.46938 * 299.99942 * 17 16 14 41 41 H 1.08003 * 119.99927 * 359.97438 * 19 18 17 42 42 H 1.08008 * 119.99783 * 180.27179 * 20 19 18 43 43 H 1.07996 * 120.00223 * 179.83235 * 21 20 19 44 44 H 1.08004 * 119.99911 * 180.02562 * 22 21 20 45 45 H 1.07995 * 119.99943 * 180.02562 * 23 22 21 46 46 H 1.09001 * 113.61346 * 140.02457 * 24 14 13 47 47 H 1.09003 * 113.61754 * 270.84191 * 24 14 13 48 48 H 1.07998 * 120.02521 * 180.29505 * 25 6 5 49 49 H 1.08010 * 119.94422 * 180.02562 * 31 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7103 1.2305 5 6 2.6335 -0.0110 2.1927 6 6 3.1003 -0.6667 3.3229 7 8 3.7959 0.0179 4.2685 8 16 5.3008 0.0305 4.0419 9 8 5.6027 -1.2922 3.6194 10 8 5.8330 0.5526 5.2517 11 6 5.5439 1.2047 2.6808 12 1 4.8775 1.0198 1.8382 13 6 5.5751 2.6768 3.1335 14 6 6.7129 2.8800 2.1192 15 1 7.5114 3.5270 2.4825 16 8 6.2581 3.2399 0.8132 17 6 6.5736 4.5819 0.4372 18 6 6.0504 4.8511 -0.9502 19 6 6.8505 4.6057 -2.0504 20 6 6.3689 4.8485 -3.3232 21 6 5.0905 5.3452 -3.4954 22 6 4.2922 5.5956 -2.3949 23 6 4.7721 5.3487 -1.1223 24 6 7.0165 1.3805 2.2743 25 6 2.8508 -2.0212 3.4886 26 6 2.1435 -2.7151 2.5258 27 6 1.8726 -4.1867 2.7049 28 9 2.4311 -4.6201 3.9122 29 9 0.4913 -4.4076 2.7249 30 9 2.4434 -4.8984 1.6444 31 6 1.6848 -2.0607 1.3977 32 1 -0.3933 0.4417 0.7650 33 1 1.7924 -0.5138 -0.8899 34 1 3.5346 1.7704 0.0321 35 1 1.5614 2.4679 -1.2084 36 1 2.8222 1.0445 2.0636 37 1 5.8856 2.8082 4.1701 38 1 4.6682 3.2297 2.8889 39 1 7.6550 4.7182 0.4500 40 1 6.1117 5.2745 1.1408 41 1 7.8509 4.2215 -1.9156 42 1 6.9925 4.6527 -4.1830 43 1 4.7152 5.5374 -4.4896 44 1 3.2931 5.9833 -2.5295 45 1 4.1483 5.5439 -0.2626 46 1 7.2725 0.8875 1.3364 47 1 7.7215 1.1582 3.0754 48 1 3.2090 -2.5328 4.3698 49 1 1.1316 -2.6048 0.6463 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_10339942_15608174.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:15:29 Heat of formation + Delta-G solvation = -227.026388 kcal Electronic energy + Delta-G solvation = -43372.976829 eV Core-core repulsion = 37332.667269 eV Total energy + Delta-G solvation = -6040.309560 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 445.098 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -51.22856 -48.73813 -48.67896 -42.60455 -40.96574 -40.21989 -40.07959 -38.42323 -37.83379 -37.30551 -37.19081 -33.90996 -32.83802 -32.22675 -31.94674 -27.93422 -27.46320 -27.39723 -27.23874 -26.57802 -24.91269 -23.63455 -22.99524 -22.43317 -22.06693 -21.11487 -19.93463 -19.78529 -19.55448 -19.34599 -18.82074 -18.39477 -18.05992 -18.00386 -17.83890 -17.65069 -17.25048 -16.80768 -16.67831 -16.48183 -16.21377 -15.97377 -15.83107 -15.57525 -15.45456 -15.38296 -15.09674 -15.00866 -14.85040 -14.81436 -14.74759 -14.50495 -14.44150 -14.31159 -14.22385 -14.06937 -13.98144 -13.76949 -13.67118 -13.60987 -13.57553 -13.38656 -13.29556 -13.23447 -12.96313 -12.40153 -12.35892 -12.24848 -12.14347 -12.05283 -11.93464 -11.40040 -10.89249 -10.78215 -10.74522 -10.40691 -9.96017 -9.90550 -5.31031 -1.29284 -0.71076 -0.40264 0.18801 0.36259 0.73095 0.96013 1.41273 1.45841 1.69836 1.79514 2.22281 2.34477 2.48909 2.54847 2.71671 2.80331 2.85712 3.02370 3.10112 3.17906 3.21504 3.24811 3.28413 3.47587 3.54374 3.60635 3.64183 3.73011 3.75534 3.90706 3.94507 3.97489 4.10466 4.14560 4.17582 4.19408 4.23219 4.37118 4.40313 4.41860 4.47240 4.53644 4.56330 4.57554 4.61260 4.61798 4.66504 4.91196 4.98487 5.09332 5.40178 5.48455 5.50101 5.92071 5.97453 6.27548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.532 6.532 2 C -0.066 4.066 3 Si 0.660 3.340 4 C -0.101 4.101 5 C -0.097 4.097 6 C 0.076 3.924 7 O -0.655 6.655 8 S 2.588 3.412 9 O -0.944 6.944 10 O -0.913 6.913 11 C -0.644 4.644 12 H 0.155 0.845 13 C -0.131 4.131 14 C 0.078 3.922 15 H 0.091 0.909 16 O -0.357 6.357 17 C 0.101 3.899 18 C -0.096 4.096 19 C -0.098 4.098 20 C -0.122 4.122 21 C -0.112 4.112 22 C -0.124 4.124 23 C -0.101 4.101 24 C -0.106 4.106 25 C -0.039 4.039 26 C -0.164 4.164 27 C 0.513 3.487 28 F -0.171 7.171 29 F -0.169 7.169 30 F -0.169 7.169 31 C -0.023 4.023 32 H 0.382 0.618 33 H 0.126 0.874 34 H -0.234 1.234 35 H -0.241 1.241 36 H 0.152 0.848 37 H 0.117 0.883 38 H 0.097 0.903 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.124 0.876 42 H 0.125 0.875 43 H 0.124 0.876 44 H 0.125 0.875 45 H 0.124 0.876 46 H 0.101 0.899 47 H 0.107 0.893 48 H 0.161 0.839 49 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.580 6.288 -2.076 6.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.337 6.337 2 C -0.177 4.177 3 Si 0.560 3.440 4 C -0.102 4.102 5 C -0.116 4.116 6 C 0.034 3.966 7 O -0.614 6.614 8 S 2.684 3.316 9 O -0.942 6.942 10 O -0.912 6.912 11 C -0.752 4.752 12 H 0.173 0.827 13 C -0.169 4.169 14 C 0.018 3.982 15 H 0.109 0.891 16 O -0.275 6.275 17 C 0.025 3.975 18 C -0.096 4.096 19 C -0.116 4.116 20 C -0.140 4.140 21 C -0.130 4.130 22 C -0.142 4.142 23 C -0.119 4.119 24 C -0.144 4.144 25 C -0.059 4.059 26 C -0.165 4.165 27 C 0.459 3.541 28 F -0.152 7.152 29 F -0.151 7.151 30 F -0.150 7.150 31 C -0.042 4.042 32 H 0.230 0.770 33 H 0.144 0.856 34 H -0.158 1.158 35 H -0.165 1.165 36 H 0.169 0.831 37 H 0.135 0.865 38 H 0.116 0.884 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.142 0.858 42 H 0.143 0.857 43 H 0.142 0.858 44 H 0.143 0.857 45 H 0.142 0.858 46 H 0.120 0.880 47 H 0.126 0.874 48 H 0.178 0.822 49 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -0.048 6.046 -2.469 6.531 hybrid contribution 0.136 -0.317 -0.371 0.507 sum 0.087 5.729 -2.839 6.395 Atomic orbital electron populations 1.86564 1.16193 1.81612 1.49376 1.25090 0.85879 1.10220 0.96489 0.95308 0.82644 0.77512 0.88541 1.20204 0.98918 0.94037 0.97011 1.21432 0.97421 1.00597 0.92167 1.17554 1.01201 0.89996 0.87812 1.85757 1.43846 1.75526 1.56269 1.05796 0.73233 0.75977 0.76579 1.93677 1.81892 1.34638 1.83984 1.93671 1.74984 1.81550 1.40957 1.32295 1.08545 1.14199 1.20129 0.82679 1.23340 1.02267 0.90095 1.01205 1.22824 0.95786 0.95696 0.83851 0.89096 1.87988 1.79197 1.29366 1.30997 1.21459 0.99448 0.83810 0.92817 1.19560 0.94996 1.01011 0.94008 1.21097 0.99844 0.98525 0.92163 1.21215 0.96148 0.99444 0.97239 1.21283 0.94318 0.98301 0.99117 1.21217 1.00130 1.00326 0.92550 1.21089 0.94810 0.98462 0.97576 1.22841 0.90194 0.97167 1.04212 1.21176 0.93362 0.92273 0.99116 1.19895 1.05366 0.92815 0.98470 1.18006 0.74701 0.87049 0.74393 1.93217 1.85179 1.91058 1.45728 1.93264 1.30072 1.95578 1.96141 1.93263 1.84645 1.80423 1.56685 1.21038 0.94001 0.93925 0.95251 0.76978 0.85640 1.15786 1.16521 0.83092 0.86508 0.88443 0.91820 0.91799 0.85830 0.85672 0.85757 0.85692 0.85840 0.87997 0.87445 0.82151 0.82897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 1.12 12.83 -35.23 -0.45 0.67 16 2 C -0.07 0.16 2.80 36.01 0.10 0.26 16 3 Si 0.66 -1.72 29.80 -169.99 -5.07 -6.79 16 4 C -0.10 0.19 5.35 -104.65 -0.56 -0.37 16 5 C -0.10 0.18 7.12 -39.43 -0.28 -0.10 16 6 C 0.08 0.02 4.79 -39.21 -0.19 -0.17 16 7 O -0.66 -0.47 10.05 -51.74 -0.52 -0.99 16 8 S 2.59 3.34 5.14 -107.50 -0.55 2.78 16 9 O -0.94 -3.44 16.26 -67.04 -1.09 -4.53 16 10 O -0.91 -3.45 17.28 -67.04 -1.16 -4.61 16 11 C -0.64 0.91 3.97 -25.77 -0.10 0.81 16 12 H 0.16 -0.34 6.02 -51.93 -0.31 -0.66 16 13 C -0.13 0.35 7.49 -25.77 -0.19 0.16 16 14 C 0.08 -0.17 4.36 -25.92 -0.11 -0.28 16 15 H 0.09 -0.36 7.88 -51.93 -0.41 -0.77 16 16 O -0.36 0.09 10.26 -35.23 -0.36 -0.27 16 17 C 0.10 -0.14 5.91 36.01 0.21 0.07 16 18 C -0.10 -0.02 5.51 -104.62 -0.58 -0.60 16 19 C -0.10 -0.03 9.70 -39.58 -0.38 -0.41 16 20 C -0.12 -0.02 10.05 -39.59 -0.40 -0.41 16 21 C -0.11 -0.01 10.05 -39.58 -0.40 -0.41 16 22 C -0.12 0.00 10.05 -39.58 -0.40 -0.40 16 23 C -0.10 0.00 9.70 -39.58 -0.38 -0.38 16 24 C -0.11 0.20 7.50 -25.92 -0.19 0.01 16 25 C -0.04 -0.04 8.43 -39.43 -0.33 -0.37 16 26 C -0.16 -0.06 5.37 -104.65 -0.56 -0.62 16 27 C 0.51 0.63 3.32 36.01 0.12 0.75 16 28 F -0.17 -0.34 15.97 2.25 0.04 -0.31 16 29 F -0.17 -0.24 17.24 2.25 0.04 -0.20 16 30 F -0.17 -0.32 17.24 2.25 0.04 -0.29 16 31 C -0.02 0.03 9.23 -39.56 -0.37 -0.34 16 32 H 0.38 -2.27 8.70 45.56 0.40 -1.87 16 33 H 0.13 -0.31 7.96 -51.93 -0.41 -0.73 16 34 H -0.23 0.12 7.00 56.52 0.40 0.52 16 35 H -0.24 -0.16 7.11 56.52 0.40 0.24 16 36 H 0.15 -0.65 4.14 -52.49 -0.22 -0.86 16 37 H 0.12 -0.38 7.44 -51.93 -0.39 -0.77 16 38 H 0.10 -0.39 8.14 -51.93 -0.42 -0.82 16 39 H 0.06 -0.16 8.08 -51.93 -0.42 -0.58 16 40 H 0.06 -0.18 8.09 -51.93 -0.42 -0.60 16 41 H 0.12 -0.14 8.06 -52.48 -0.42 -0.57 16 42 H 0.13 -0.19 8.06 -52.48 -0.42 -0.62 16 43 H 0.12 -0.20 8.06 -52.49 -0.42 -0.62 16 44 H 0.13 -0.22 8.06 -52.48 -0.42 -0.64 16 45 H 0.12 -0.24 8.06 -52.49 -0.42 -0.66 16 46 H 0.10 -0.19 8.14 -51.93 -0.42 -0.61 16 47 H 0.11 -0.37 8.10 -51.93 -0.42 -0.79 16 48 H 0.16 0.07 7.15 -52.49 -0.38 -0.31 16 49 H 0.15 -0.34 8.06 -52.48 -0.42 -0.77 16 LS Contribution 435.06 15.07 6.56 6.56 Total: 0.00 -10.16 435.06 -13.09 -23.25 By element: Atomic # 1 Polarization: -6.92 SS G_CDS: -5.56 Total: -12.48 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -5.00 Total: -2.80 kcal Atomic # 8 Polarization: -6.14 SS G_CDS: -3.58 Total: -9.72 kcal Atomic # 9 Polarization: -0.91 SS G_CDS: 0.11 Total: -0.79 kcal Atomic # 14 Polarization: -1.72 SS G_CDS: -5.07 Total: -6.79 kcal Atomic # 16 Polarization: 3.34 SS G_CDS: -0.55 Total: 2.78 kcal Total LS contribution 6.56 Total: 6.56 kcal Total: -10.16 -13.09 -23.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10339942_15608174.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -203.778 kcal (2) G-P(sol) polarization free energy of solvation -10.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds