Wall clock time and date at job start Mon Mar 8 2021 08:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86297 * 109.46720 * 2 1 4 4 C 1.50700 * 109.47108 * 119.99588 * 2 1 3 5 5 C 1.38125 * 119.97292 * 245.25978 * 4 2 1 6 6 C 1.38752 * 119.94137 * 180.25336 * 5 4 2 7 7 O 1.35895 * 120.05781 * 179.73900 * 6 5 4 8 8 S 1.52194 * 114.00406 * 269.73113 * 7 6 5 9 9 O 1.42102 * 104.27516 * 318.92459 * 8 7 6 10 10 O 1.42104 * 104.28020 * 191.06919 * 8 7 6 11 11 C 1.81396 * 104.45117 * 74.99695 * 8 7 6 12 12 H 1.09003 * 112.85269 * 311.19765 * 11 8 7 13 13 C 1.54054 * 113.62216 * 82.50428 * 11 8 7 14 14 C 1.53782 * 86.98558 * 139.98188 * 13 11 8 15 15 H 1.08999 * 113.61385 * 219.98389 * 14 13 11 16 16 O 1.42899 * 113.61491 * 89.16290 * 14 13 11 17 17 C 1.42903 * 113.99629 * 110.86418 * 16 14 13 18 18 C 1.50701 * 109.46878 * 179.97438 * 17 16 14 19 19 C 1.38233 * 120.00099 * 269.72733 * 18 17 16 20 20 C 1.38234 * 119.99645 * 179.78840 * 19 18 17 21 21 C 1.38230 * 120.00350 * 0.44086 * 20 19 18 22 22 C 1.38238 * 119.99911 * 359.81385 * 21 20 19 23 23 C 1.38234 * 120.00093 * 359.97438 * 22 21 20 24 24 C 1.53780 * 87.17314 * 334.57258 * 14 13 11 25 25 C 1.38716 * 119.88891 * 359.47127 * 6 5 4 26 26 C 1.38161 * 119.94561 * 0.27296 * 25 6 5 27 27 C 1.50701 * 119.97654 * 179.97438 * 26 25 6 28 28 F 1.39901 * 109.46908 * 0.02562 * 27 26 25 29 29 F 1.39902 * 109.47389 * 119.99875 * 27 26 25 30 30 F 1.39898 * 109.47170 * 240.00159 * 27 26 25 31 31 C 1.38248 * 120.05344 * 0.02562 * 26 25 6 32 32 H 0.96701 * 114.00174 * 300.00052 * 1 2 3 33 33 H 1.08997 * 109.47471 * 240.00033 * 2 1 3 34 34 H 1.48505 * 109.99998 * 178.68062 * 3 2 1 35 35 H 1.48495 * 110.00330 * 299.99982 * 3 2 1 36 36 H 1.07995 * 120.02724 * 0.02562 * 5 4 2 37 37 H 1.09003 * 113.60892 * 25.47669 * 13 11 8 38 38 H 1.08995 * 113.69702 * 254.49842 * 13 11 8 39 39 H 1.09002 * 109.47382 * 59.99956 * 17 16 14 40 40 H 1.09001 * 109.46938 * 299.99942 * 17 16 14 41 41 H 1.08003 * 119.99927 * 359.97438 * 19 18 17 42 42 H 1.08008 * 119.99783 * 180.27179 * 20 19 18 43 43 H 1.07996 * 120.00223 * 179.83235 * 21 20 19 44 44 H 1.08004 * 119.99911 * 180.02562 * 22 21 20 45 45 H 1.07995 * 119.99943 * 180.02562 * 23 22 21 46 46 H 1.09001 * 113.61346 * 140.02457 * 24 14 13 47 47 H 1.09003 * 113.61754 * 270.84191 * 24 14 13 48 48 H 1.07998 * 120.02521 * 180.29505 * 25 6 5 49 49 H 1.08010 * 119.94422 * 180.02562 * 31 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7103 1.2305 5 6 2.6335 -0.0110 2.1927 6 6 3.1003 -0.6667 3.3229 7 8 3.7959 0.0179 4.2685 8 16 5.3008 0.0305 4.0419 9 8 5.6027 -1.2922 3.6194 10 8 5.8330 0.5526 5.2517 11 6 5.5439 1.2047 2.6808 12 1 4.8775 1.0198 1.8382 13 6 5.5751 2.6768 3.1335 14 6 6.7129 2.8800 2.1192 15 1 7.5114 3.5270 2.4825 16 8 6.2581 3.2399 0.8132 17 6 6.5736 4.5819 0.4372 18 6 6.0504 4.8511 -0.9502 19 6 6.8505 4.6057 -2.0504 20 6 6.3689 4.8485 -3.3232 21 6 5.0905 5.3452 -3.4954 22 6 4.2922 5.5956 -2.3949 23 6 4.7721 5.3487 -1.1223 24 6 7.0165 1.3805 2.2743 25 6 2.8508 -2.0212 3.4886 26 6 2.1435 -2.7151 2.5258 27 6 1.8726 -4.1867 2.7049 28 9 2.4311 -4.6201 3.9122 29 9 0.4913 -4.4076 2.7249 30 9 2.4434 -4.8984 1.6444 31 6 1.6848 -2.0607 1.3977 32 1 -0.3933 0.4417 0.7650 33 1 1.7924 -0.5138 -0.8899 34 1 3.5346 1.7704 0.0321 35 1 1.5614 2.4679 -1.2084 36 1 2.8222 1.0445 2.0636 37 1 5.8856 2.8082 4.1701 38 1 4.6682 3.2297 2.8889 39 1 7.6550 4.7182 0.4500 40 1 6.1117 5.2745 1.1408 41 1 7.8509 4.2215 -1.9156 42 1 6.9925 4.6527 -4.1830 43 1 4.7152 5.5374 -4.4896 44 1 3.2931 5.9833 -2.5295 45 1 4.1483 5.5439 -0.2626 46 1 7.2725 0.8875 1.3364 47 1 7.7215 1.1582 3.0754 48 1 3.2090 -2.5328 4.3698 49 1 1.1316 -2.6048 0.6463 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10339942_15608174.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:15:26 Heat of formation + Delta-G solvation = -225.034403 kcal Electronic energy + Delta-G solvation = -43372.890450 eV Core-core repulsion = 37332.667269 eV Total energy + Delta-G solvation = -6040.223181 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 445.098 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -51.35400 -48.87771 -48.80367 -42.59186 -40.80634 -40.16310 -39.97328 -38.56840 -37.68508 -37.46089 -37.05002 -33.84625 -32.73389 -32.17862 -31.86575 -27.87027 -27.42183 -27.26817 -27.02983 -26.45704 -24.89333 -23.55699 -22.98229 -22.33431 -22.02520 -20.98511 -19.95690 -19.82043 -19.67520 -19.39867 -18.84516 -18.37532 -17.98521 -17.91757 -17.76386 -17.49237 -17.15503 -16.67389 -16.57249 -16.33465 -16.19760 -15.90925 -15.78069 -15.69985 -15.46914 -15.34225 -15.23628 -14.97955 -14.95319 -14.90859 -14.69371 -14.53187 -14.34610 -14.22020 -14.18629 -14.01990 -13.82775 -13.70074 -13.66824 -13.62983 -13.54111 -13.41758 -13.35553 -13.18947 -12.92791 -12.29028 -12.18347 -12.13990 -12.07049 -11.91316 -11.77571 -11.29026 -10.80586 -10.61654 -10.58873 -10.34688 -9.90261 -9.83973 -5.12575 -1.31647 -0.66666 -0.37140 0.25583 0.41925 0.70513 1.12837 1.40364 1.56520 1.75345 1.94654 2.32682 2.38933 2.42133 2.57887 2.71399 2.86560 2.93041 3.08443 3.18123 3.21481 3.34164 3.41993 3.45939 3.55104 3.63667 3.67868 3.77108 3.86566 3.88984 3.98121 4.08428 4.19996 4.25309 4.31712 4.35802 4.41569 4.42644 4.44202 4.47893 4.56282 4.61257 4.66968 4.70147 4.70641 4.73579 4.84123 4.86536 5.01534 5.08031 5.15226 5.47353 5.54841 5.57646 6.01780 6.17332 6.68666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.066 4.066 3 Si 0.733 3.267 4 C -0.094 4.094 5 C -0.087 4.087 6 C 0.061 3.939 7 O -0.656 6.656 8 S 2.587 3.413 9 O -0.976 6.976 10 O -0.946 6.946 11 C -0.630 4.630 12 H 0.165 0.835 13 C -0.131 4.131 14 C 0.076 3.924 15 H 0.113 0.887 16 O -0.374 6.374 17 C 0.099 3.901 18 C -0.107 4.107 19 C -0.113 4.113 20 C -0.136 4.136 21 C -0.127 4.127 22 C -0.137 4.137 23 C -0.113 4.113 24 C -0.116 4.116 25 C -0.056 4.056 26 C -0.170 4.170 27 C 0.513 3.487 28 F -0.178 7.178 29 F -0.171 7.171 30 F -0.174 7.174 31 C -0.021 4.021 32 H 0.399 0.601 33 H 0.128 0.872 34 H -0.257 1.257 35 H -0.287 1.287 36 H 0.176 0.824 37 H 0.124 0.876 38 H 0.116 0.884 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.132 0.868 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.138 0.862 45 H 0.141 0.859 46 H 0.100 0.900 47 H 0.120 0.880 48 H 0.155 0.845 49 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.953 7.716 -2.486 8.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.176 4.176 3 Si 0.637 3.363 4 C -0.094 4.094 5 C -0.107 4.107 6 C 0.020 3.980 7 O -0.614 6.614 8 S 2.687 3.313 9 O -0.974 6.974 10 O -0.944 6.944 11 C -0.741 4.741 12 H 0.183 0.817 13 C -0.169 4.169 14 C 0.017 3.983 15 H 0.130 0.870 16 O -0.294 6.294 17 C 0.023 3.977 18 C -0.107 4.107 19 C -0.131 4.131 20 C -0.154 4.154 21 C -0.145 4.145 22 C -0.155 4.155 23 C -0.131 4.131 24 C -0.154 4.154 25 C -0.077 4.077 26 C -0.172 4.172 27 C 0.458 3.542 28 F -0.159 7.159 29 F -0.152 7.152 30 F -0.155 7.155 31 C -0.040 4.040 32 H 0.250 0.750 33 H 0.145 0.855 34 H -0.182 1.182 35 H -0.214 1.214 36 H 0.193 0.807 37 H 0.142 0.858 38 H 0.135 0.865 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.150 0.850 42 H 0.154 0.846 43 H 0.154 0.846 44 H 0.156 0.844 45 H 0.158 0.842 46 H 0.118 0.882 47 H 0.138 0.862 48 H 0.173 0.827 49 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -0.437 7.440 -2.823 7.970 hybrid contribution 0.220 -0.733 -0.345 0.839 sum -0.217 6.707 -3.167 7.420 Atomic orbital electron populations 1.86538 1.16099 1.82024 1.50654 1.25152 0.86030 1.10292 0.96128 0.94520 0.79974 0.75413 0.86431 1.20280 0.98413 0.93668 0.97069 1.21657 0.96293 1.01679 0.91043 1.17720 1.01797 0.89966 0.88524 1.85719 1.43481 1.75466 1.56783 1.05697 0.72956 0.75833 0.76786 1.93630 1.82433 1.36998 1.84377 1.93622 1.75755 1.81854 1.43138 1.32212 1.09450 1.13860 1.18556 0.81731 1.23496 1.03179 0.88695 1.01543 1.22912 0.96518 0.95559 0.83308 0.86966 1.87956 1.79529 1.29973 1.31920 1.21548 1.00189 0.83717 0.92211 1.19852 0.95160 1.00812 0.94926 1.21340 1.00496 0.98837 0.92440 1.21462 0.96524 0.99584 0.97809 1.21539 0.94535 0.98505 0.99902 1.21499 1.00849 1.00407 0.92765 1.21384 0.95138 0.98350 0.98186 1.23041 0.89941 0.97819 1.04638 1.21267 0.94032 0.92960 0.99405 1.19820 1.06134 0.92139 0.99076 1.18126 0.74513 0.87574 0.73959 1.93198 1.85310 1.91222 1.46217 1.93255 1.30165 1.95653 1.96124 1.93247 1.84738 1.80674 1.56882 1.21228 0.93521 0.94383 0.94832 0.75018 0.85459 1.18203 1.21360 0.80686 0.85807 0.86545 0.90838 0.90149 0.84973 0.84612 0.84625 0.84422 0.84166 0.88171 0.86214 0.82734 0.81704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 3.05 12.83 -148.98 -1.91 1.14 16 2 C -0.07 0.40 2.80 71.24 0.20 0.60 16 3 Si 0.73 -4.60 29.80 68.60 2.04 -2.55 16 4 C -0.09 0.44 5.35 -19.88 -0.11 0.34 16 5 C -0.09 0.40 7.12 22.37 0.16 0.55 16 6 C 0.06 0.05 4.79 22.51 0.11 0.16 16 7 O -0.66 -1.31 10.05 -61.46 -0.62 -1.93 16 8 S 2.59 8.56 5.14 -56.49 -0.29 8.27 16 9 O -0.98 -8.63 16.26 -118.57 -1.93 -10.56 16 10 O -0.95 -8.07 17.28 -118.57 -2.05 -10.12 16 11 C -0.63 2.23 3.97 31.21 0.12 2.35 16 12 H 0.17 -0.91 6.02 -2.39 -0.01 -0.92 16 13 C -0.13 0.92 7.49 31.21 0.23 1.15 16 14 C 0.08 -0.46 4.36 31.12 0.14 -0.32 16 15 H 0.11 -1.14 7.88 -2.39 -0.02 -1.16 16 16 O -0.37 0.73 10.26 -148.98 -1.53 -0.80 16 17 C 0.10 -0.42 5.91 71.24 0.42 0.00 16 18 C -0.11 0.01 5.51 -19.86 -0.11 -0.09 16 19 C -0.11 -0.06 9.70 22.27 0.22 0.16 16 20 C -0.14 -0.07 10.05 22.27 0.22 0.15 16 21 C -0.13 -0.04 10.05 22.27 0.22 0.18 16 22 C -0.14 0.01 10.05 22.27 0.22 0.24 16 23 C -0.11 0.07 9.70 22.27 0.22 0.29 16 24 C -0.12 0.52 7.50 31.12 0.23 0.75 16 25 C -0.06 -0.17 8.43 22.37 0.19 0.02 16 26 C -0.17 -0.23 5.37 -19.88 -0.11 -0.34 16 27 C 0.51 1.76 3.32 71.24 0.24 2.00 16 28 F -0.18 -1.00 15.97 44.97 0.72 -0.28 16 29 F -0.17 -0.59 17.24 44.97 0.78 0.18 16 30 F -0.17 -0.82 17.24 44.97 0.78 -0.04 16 31 C -0.02 0.05 9.23 22.28 0.21 0.26 16 32 H 0.40 -5.42 8.70 -74.06 -0.64 -6.06 16 33 H 0.13 -0.78 7.96 -2.39 -0.02 -0.80 16 34 H -0.26 0.59 7.00 99.48 0.70 1.29 16 35 H -0.29 -0.46 7.11 99.48 0.71 0.25 16 36 H 0.18 -1.80 4.14 -2.91 -0.01 -1.82 16 37 H 0.12 -0.99 7.44 -2.39 -0.02 -1.01 16 38 H 0.12 -1.24 8.14 -2.39 -0.02 -1.26 16 39 H 0.07 -0.48 8.08 -2.39 -0.02 -0.50 16 40 H 0.08 -0.63 8.09 -2.39 -0.02 -0.65 16 41 H 0.13 -0.31 8.06 -2.91 -0.02 -0.33 16 42 H 0.14 -0.38 8.06 -2.91 -0.02 -0.41 16 43 H 0.14 -0.42 8.06 -2.91 -0.02 -0.44 16 44 H 0.14 -0.51 8.06 -2.91 -0.02 -0.54 16 45 H 0.14 -0.71 8.06 -2.91 -0.02 -0.73 16 46 H 0.10 -0.40 8.14 -2.39 -0.02 -0.42 16 47 H 0.12 -0.86 8.10 -2.39 -0.02 -0.88 16 48 H 0.16 0.49 7.15 -2.91 -0.02 0.47 16 49 H 0.17 -0.85 8.06 -2.91 -0.02 -0.87 16 Total: 0.00 -24.48 435.06 -0.57 -25.05 By element: Atomic # 1 Polarization: -17.22 SS G_CDS: 0.42 Total: -16.80 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: 3.03 Total: 8.44 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -8.03 Total: -22.27 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 2.27 Total: -0.14 kcal Atomic # 14 Polarization: -4.60 SS G_CDS: 2.04 Total: -2.55 kcal Atomic # 16 Polarization: 8.56 SS G_CDS: -0.29 Total: 8.27 kcal Total: -24.48 -0.57 -25.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10339942_15608174.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -199.989 kcal (2) G-P(sol) polarization free energy of solvation -24.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds