Wall clock time and date at job start Mon Mar 8 2021 08:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45196 * 109.47367 * 2 1 4 4 C 1.34220 * 116.99913 * 180.02562 * 3 2 1 5 5 O 1.20820 * 120.00497 * 359.97438 * 4 3 2 6 6 C 1.50712 * 120.00031 * 179.97438 * 4 3 2 7 7 H 1.09000 * 109.46559 * 59.99942 * 6 4 3 8 8 C 1.52996 * 109.47086 * 179.97438 * 6 4 3 9 9 C 1.53002 * 109.46972 * 180.02562 * 8 6 4 10 10 C 1.52997 * 109.46817 * 299.99733 * 9 8 6 11 11 F 1.39900 * 109.47010 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47232 * 300.00239 * 10 9 8 13 13 S 1.81398 * 109.46969 * 304.99691 * 12 10 9 14 14 O 1.42094 * 110.54561 * 291.62530 * 13 12 10 15 15 O 1.42102 * 110.53974 * 68.38103 * 13 12 10 16 16 O 1.52200 * 104.44862 * 180.02562 * 13 12 10 17 17 C 1.35900 * 114.00359 * 75.00438 * 16 13 12 18 18 C 1.38716 * 120.05271 * 269.73020 * 17 16 13 19 19 C 1.38166 * 119.93945 * 179.71484 * 18 17 16 20 20 C 1.50701 * 119.97127 * 180.27087 * 19 18 17 21 21 F 1.39905 * 109.47440 * 270.30386 * 20 19 18 22 22 F 1.39901 * 109.46843 * 30.30127 * 20 19 18 23 23 F 1.39901 * 109.47388 * 150.30095 * 20 19 18 24 24 C 1.38244 * 120.05862 * 0.57397 * 19 18 17 25 25 C 1.38288 * 120.11045 * 359.67940 * 24 19 18 26 26 C 1.50700 * 119.97433 * 180.02562 * 25 24 19 27 27 O 1.42898 * 109.47271 * 65.01511 * 26 25 24 28 28 Si 1.86300 * 109.47097 * 185.02049 * 26 25 24 29 29 C 1.38129 * 120.05622 * 0.04159 * 25 24 19 30 30 C 1.53006 * 109.47127 * 60.00361 * 10 9 8 31 31 C 1.52997 * 109.46964 * 299.99785 * 6 4 3 32 32 H 1.08997 * 109.47005 * 300.00142 * 1 2 3 33 33 H 1.09000 * 109.46445 * 60.00436 * 1 2 3 34 34 H 1.08995 * 109.47141 * 180.02562 * 1 2 3 35 35 H 1.09002 * 109.46897 * 239.99378 * 2 1 3 36 36 H 1.09004 * 109.46340 * 120.00049 * 2 1 3 37 37 H 1.08996 * 109.47452 * 59.99790 * 8 6 4 38 38 H 1.09000 * 109.47054 * 299.99950 * 8 6 4 39 39 H 1.09002 * 109.47070 * 179.97438 * 9 8 6 40 40 H 1.08996 * 109.47407 * 59.99513 * 9 8 6 41 41 H 1.08994 * 109.47510 * 65.00170 * 12 10 9 42 42 H 1.09001 * 109.47096 * 185.00033 * 12 10 9 43 43 H 1.07999 * 120.03010 * 359.97438 * 18 17 16 44 44 H 1.07998 * 119.94453 * 179.69553 * 24 19 18 45 45 H 1.09008 * 109.46703 * 305.01477 * 26 25 24 46 46 H 0.96696 * 114.00158 * 180.02562 * 27 26 25 47 47 H 1.48497 * 110.00032 * 299.99626 * 28 26 25 48 48 H 1.48498 * 110.00047 * 61.31882 * 28 26 25 49 49 H 1.07994 * 120.03123 * 180.02562 * 29 25 24 50 50 H 1.08993 * 109.46955 * 60.00011 * 30 10 9 51 51 H 1.09000 * 109.47050 * 179.97438 * 30 10 9 52 52 H 1.09002 * 109.47153 * 60.00001 * 31 6 4 53 53 H 1.08993 * 109.47194 * 300.00289 * 31 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0808 0.5865 -0.0005 6 6 3.9209 2.9373 -0.0012 7 1 3.5852 3.4697 0.8888 8 6 5.4488 2.8572 -0.0010 9 6 6.0336 4.2710 -0.0010 10 6 5.5622 5.0178 -1.2503 11 9 6.0965 6.3108 -1.2501 12 6 6.0338 4.2708 -2.4995 13 16 7.8324 4.0462 -2.4267 14 8 8.4967 5.2952 -2.5602 15 8 8.1799 3.1385 -1.3900 16 8 8.1742 3.3009 -3.7090 17 6 8.1416 4.0764 -4.8245 18 6 6.9662 4.1994 -5.5509 19 6 6.9341 4.9931 -6.6814 20 6 5.6560 5.1321 -7.4676 21 9 5.5986 4.1327 -8.4450 22 9 4.5618 5.0043 -6.6053 23 9 5.6209 6.3883 -8.0825 24 6 8.0751 5.6549 -7.0955 25 6 9.2494 5.5297 -6.3760 26 6 10.4912 6.2529 -6.8298 27 8 10.2828 7.6634 -6.7342 28 14 11.9260 5.7623 -5.7476 29 6 9.2853 4.7420 -5.2419 30 6 4.0342 5.0980 -1.2505 31 6 3.4490 3.6839 -1.2505 32 1 -0.3633 0.5138 0.8900 33 1 -0.3632 0.5138 -0.8901 34 1 -0.3633 -1.0276 0.0005 35 1 1.8934 -0.5139 -0.8900 36 1 1.8933 -0.5139 0.8901 37 1 5.7847 2.3246 -0.8907 38 1 5.7846 2.3254 0.8892 39 1 7.1221 4.2139 -0.0005 40 1 5.6976 4.8032 0.8888 41 1 5.5475 3.2964 -2.5454 42 1 5.7754 4.8480 -3.3873 43 1 6.0759 3.6786 -5.2307 44 1 8.0492 6.2709 -7.9822 45 1 10.7088 5.9870 -7.8644 46 1 11.0429 8.1929 -7.0113 47 1 11.6418 6.1193 -4.3345 48 1 12.1733 4.3026 -5.8628 49 1 10.2024 4.6448 -4.6801 50 1 3.6983 5.6302 -0.3606 51 1 3.6984 5.6305 -2.1403 52 1 2.3604 3.7410 -1.2501 53 1 3.7845 3.1514 -2.1403 There are 84 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 84 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10339942_16464696.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:28:15 Heat of formation + Delta-G solvation = -379.319584 kcal Electronic energy + Delta-G solvation = -49896.679513 eV Core-core repulsion = 43135.233040 eV Total energy + Delta-G solvation = -6761.446473 eV No. of doubly occupied orbitals = 84 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 471.120 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -51.34992 -49.13627 -48.85629 -48.80354 -42.80283 -41.91053 -40.25448 -39.71418 -38.72547 -37.74194 -37.72034 -37.60322 -34.10357 -33.64573 -32.50264 -32.35632 -32.15373 -29.45025 -27.64211 -27.35234 -25.49659 -25.07182 -24.24701 -23.64972 -23.02079 -22.04768 -21.83889 -20.68971 -19.93318 -19.68222 -19.64250 -19.46468 -18.85893 -18.73818 -18.54295 -18.46522 -18.17801 -18.05046 -17.72448 -17.43583 -17.35780 -16.84902 -16.39125 -16.17971 -15.88418 -15.70218 -15.55266 -15.53043 -15.38413 -15.24241 -15.22043 -14.98250 -14.96480 -14.93431 -14.89187 -14.71970 -14.52970 -14.38640 -14.25170 -13.98877 -13.93866 -13.79465 -13.76104 -13.68801 -13.63883 -13.44158 -13.38483 -13.28716 -13.11772 -13.01484 -12.91615 -12.72324 -12.54915 -12.49515 -12.38599 -12.16644 -12.05757 -11.67541 -11.55562 -11.43276 -11.24302 -10.91843 -10.63708 -10.32606 -5.11728 -1.57795 -0.79697 -0.56915 0.48517 1.04956 1.10978 1.33908 1.49646 1.55134 1.63612 1.88029 2.04505 2.37716 2.40093 2.67022 2.67733 2.88750 2.97233 3.04779 3.12393 3.17071 3.23308 3.32432 3.41869 3.45327 3.51161 3.61696 3.65607 3.74226 3.80905 3.88180 3.94646 3.95846 4.02594 4.06959 4.15434 4.19110 4.21256 4.29988 4.33270 4.38108 4.45601 4.46474 4.58969 4.63235 4.70612 4.79008 4.84410 4.85374 4.88582 4.98533 5.00538 5.06233 5.11849 5.16302 5.41071 6.61596 6.85201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.355 6.355 4 C 0.465 3.535 5 O -0.540 6.540 6 C -0.081 4.081 7 H 0.143 0.857 8 C -0.104 4.104 9 C -0.175 4.175 10 C 0.134 3.866 11 F -0.205 7.205 12 C -0.677 4.677 13 S 2.573 3.427 14 O -0.966 6.966 15 O -0.938 6.938 16 O -0.662 6.662 17 C 0.052 3.948 18 C -0.076 4.076 19 C -0.164 4.164 20 C 0.521 3.479 21 F -0.171 7.171 22 F -0.170 7.170 23 F -0.169 7.169 24 C -0.014 4.014 25 C -0.064 4.064 26 C -0.066 4.066 27 O -0.555 6.555 28 Si 0.746 3.254 29 C -0.092 4.092 30 C -0.120 4.120 31 C -0.113 4.113 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.123 0.877 41 H 0.189 0.811 42 H 0.177 0.823 43 H 0.188 0.812 44 H 0.181 0.819 45 H 0.128 0.872 46 H 0.411 0.589 47 H -0.302 1.302 48 H -0.282 1.282 49 H 0.129 0.871 50 H 0.108 0.892 51 H 0.107 0.893 52 H 0.111 0.889 53 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.787 3.097 -5.372 7.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.271 6.271 4 C 0.309 3.691 5 O -0.429 6.429 6 C -0.100 4.100 7 H 0.161 0.839 8 C -0.141 4.141 9 C -0.213 4.213 10 C 0.114 3.886 11 F -0.185 7.185 12 C -0.806 4.806 13 S 2.673 3.327 14 O -0.964 6.964 15 O -0.936 6.936 16 O -0.621 6.621 17 C 0.010 3.990 18 C -0.096 4.096 19 C -0.166 4.166 20 C 0.467 3.533 21 F -0.152 7.152 22 F -0.151 7.151 23 F -0.150 7.150 24 C -0.032 4.032 25 C -0.064 4.064 26 C -0.177 4.177 27 O -0.366 6.366 28 Si 0.653 3.347 29 C -0.111 4.111 30 C -0.158 4.158 31 C -0.150 4.150 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.112 0.888 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.101 0.899 39 H 0.090 0.910 40 H 0.142 0.858 41 H 0.206 0.794 42 H 0.195 0.805 43 H 0.206 0.794 44 H 0.199 0.801 45 H 0.146 0.854 46 H 0.264 0.736 47 H -0.230 1.230 48 H -0.208 1.208 49 H 0.147 0.853 50 H 0.127 0.873 51 H 0.125 0.875 52 H 0.130 0.870 53 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.158 1.932 -4.265 5.647 hybrid contribution -0.547 -0.800 0.307 1.017 sum -3.705 1.132 -3.958 5.538 Atomic orbital electron populations 1.21820 0.90588 1.04194 1.03871 1.23252 0.96944 0.79421 1.02416 1.86503 1.23887 1.33302 1.83415 1.24143 0.80703 0.92994 0.71229 1.90704 1.61208 1.44459 1.46578 1.21307 0.95076 0.89079 1.04537 0.83947 1.21406 0.92663 0.95306 1.04770 1.22678 1.02213 0.97147 0.99267 1.20703 0.98209 0.77732 0.91948 1.92979 1.88012 1.40108 1.97391 1.31591 1.24784 1.14662 1.09569 1.06031 0.79434 0.73580 0.73678 1.93668 1.72116 1.46575 1.84054 1.93656 1.82885 1.63920 1.53148 1.85756 1.89471 1.56048 1.30808 1.17795 0.95827 0.96832 0.88523 1.21354 0.98102 0.96697 0.93458 1.19904 0.94742 1.03810 0.98160 1.17849 0.83415 0.74296 0.77765 1.93279 1.96645 1.61297 1.64025 1.93223 1.56699 1.95582 1.69631 1.93249 1.96634 1.41337 1.83759 1.21368 0.88981 0.93530 0.99360 1.19538 0.96969 0.96597 0.93329 1.24551 0.98870 0.85593 1.08718 1.86441 1.45508 1.14124 1.90568 0.94526 0.82996 0.80081 0.77073 1.21503 0.97807 0.95490 0.96336 1.22088 0.88258 0.98376 1.07104 1.21684 1.03583 0.94140 0.95598 0.91215 0.90966 0.88810 0.91391 0.91678 0.91364 0.89912 0.91025 0.85831 0.79364 0.80487 0.79444 0.80128 0.85437 0.73639 1.23033 1.20832 0.85334 0.87339 0.87489 0.87025 0.90135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.72 10.29 71.98 0.74 1.46 16 2 C 0.05 -0.01 6.19 71.98 0.45 0.43 16 3 O -0.35 -0.37 10.12 -51.32 -0.52 -0.89 16 4 C 0.46 1.28 7.26 71.24 0.52 1.80 16 5 O -0.54 -5.59 15.73 21.98 0.35 -5.24 16 6 C -0.08 0.29 2.63 -11.54 -0.03 0.26 16 7 H 0.14 -1.17 8.14 -2.39 -0.02 -1.19 16 8 C -0.10 -0.10 3.92 30.59 0.12 0.02 16 9 C -0.18 -0.10 4.61 30.59 0.14 0.04 16 10 C 0.13 -0.13 1.11 -10.79 -0.01 -0.14 16 11 F -0.20 -0.99 16.37 44.97 0.74 -0.25 16 12 C -0.68 1.22 4.09 71.98 0.29 1.51 16 13 S 2.57 21.84 4.41 -56.49 -0.25 21.59 16 14 O -0.97 -13.97 15.96 -118.57 -1.89 -15.86 16 15 O -0.94 -12.57 14.90 -118.57 -1.77 -14.34 16 16 O -0.66 -4.95 10.05 -61.52 -0.62 -5.57 16 17 C 0.05 0.29 4.79 22.51 0.11 0.40 16 18 C -0.08 0.06 7.82 22.37 0.17 0.23 16 19 C -0.16 0.22 5.45 -19.88 -0.11 0.11 16 20 C 0.52 -1.00 3.36 71.24 0.24 -0.76 16 21 F -0.17 0.09 17.30 44.97 0.78 0.87 16 22 F -0.17 0.43 16.47 44.97 0.74 1.17 16 23 F -0.17 0.15 16.46 44.97 0.74 0.89 16 24 C -0.01 0.02 9.03 22.28 0.20 0.22 16 25 C -0.06 -0.11 5.38 -19.88 -0.11 -0.22 16 26 C -0.07 0.26 2.79 71.24 0.20 0.46 16 27 O -0.56 2.24 12.81 -148.98 -1.91 0.33 16 28 Si 0.75 -0.83 29.85 68.60 2.05 1.22 16 29 C -0.09 -0.65 7.67 22.37 0.17 -0.48 16 30 C -0.12 0.92 5.19 30.61 0.16 1.08 16 31 C -0.11 0.89 4.86 30.61 0.15 1.04 16 32 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 33 H 0.07 -0.39 8.14 -2.39 -0.02 -0.41 16 34 H 0.09 -0.67 8.14 -2.39 -0.02 -0.69 16 35 H 0.07 0.02 8.13 -2.39 -0.02 0.00 16 36 H 0.06 0.06 8.13 -2.38 -0.02 0.04 16 37 H 0.07 0.18 6.01 -2.39 -0.01 0.17 16 38 H 0.08 0.26 8.10 -2.39 -0.02 0.24 16 39 H 0.07 0.39 5.40 -2.39 -0.01 0.37 16 40 H 0.12 -0.49 8.14 -2.39 -0.02 -0.51 16 41 H 0.19 -1.38 4.83 -2.39 -0.01 -1.40 16 42 H 0.18 -1.27 6.62 -2.39 -0.02 -1.29 16 43 H 0.19 -1.50 7.08 -2.91 -0.02 -1.52 16 44 H 0.18 -1.19 7.60 -2.91 -0.02 -1.22 16 45 H 0.13 -1.44 7.96 -2.38 -0.02 -1.46 16 46 H 0.41 -5.94 8.74 -74.06 -0.65 -6.59 16 47 H -0.30 -2.92 7.05 99.48 0.70 -2.22 16 48 H -0.28 -1.12 7.11 99.48 0.71 -0.42 16 49 H 0.13 1.21 4.87 -2.91 -0.01 1.19 16 50 H 0.11 -1.08 8.14 -2.39 -0.02 -1.10 16 51 H 0.11 -1.07 8.14 -2.39 -0.02 -1.09 16 52 H 0.11 -1.15 8.11 -2.39 -0.02 -1.17 16 53 H 0.08 -0.72 6.32 -2.39 -0.02 -0.73 16 Total: 0.00 -32.20 445.94 2.24 -29.96 By element: Atomic # 1 Polarization: -21.75 SS G_CDS: 0.40 Total: -21.35 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: 3.40 Total: 7.48 kcal Atomic # 8 Polarization: -35.22 SS G_CDS: -6.36 Total: -41.58 kcal Atomic # 9 Polarization: -0.32 SS G_CDS: 2.99 Total: 2.68 kcal Atomic # 14 Polarization: -0.83 SS G_CDS: 2.05 Total: 1.22 kcal Atomic # 16 Polarization: 21.84 SS G_CDS: -0.25 Total: 21.59 kcal Total: -32.20 2.24 -29.96 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10339942_16464696.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -349.359 kcal (2) G-P(sol) polarization free energy of solvation -32.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -381.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -379.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds