Wall clock time and date at job start Mon Mar 8 2021 08:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45200 * 109.46419 * 2 1 4 4 C 1.34232 * 116.99370 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00236 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99825 * 179.97438 * 4 3 2 7 7 H 1.09002 * 109.46793 * 60.00308 * 6 4 3 8 8 C 1.53002 * 109.46958 * 179.97438 * 6 4 3 9 9 C 1.53008 * 109.47025 * 180.02562 * 8 6 4 10 10 C 1.53002 * 109.46800 * 300.00150 * 9 8 6 11 11 F 1.39905 * 109.47051 * 299.99978 * 10 9 8 12 12 C 1.52997 * 109.47092 * 180.02562 * 10 9 8 13 13 S 1.81397 * 109.47440 * 184.99914 * 12 10 9 14 14 O 1.42098 * 110.54290 * 291.62791 * 13 12 10 15 15 O 1.42104 * 110.54110 * 68.37369 * 13 12 10 16 16 O 1.52198 * 104.45183 * 179.97438 * 13 12 10 17 17 C 1.35902 * 113.99922 * 74.99923 * 16 13 12 18 18 C 1.38703 * 120.05324 * 90.00260 * 17 16 13 19 19 C 1.38161 * 119.94511 * 180.02562 * 18 17 16 20 20 C 1.50704 * 119.97601 * 179.97438 * 19 18 17 21 21 F 1.39901 * 109.47088 * 0.02562 * 20 19 18 22 22 F 1.39905 * 109.47081 * 120.00247 * 20 19 18 23 23 F 1.39905 * 109.47267 * 240.00029 * 20 19 18 24 24 C 1.38243 * 120.05509 * 359.97438 * 19 18 17 25 25 C 1.38284 * 120.11129 * 0.02562 * 24 19 18 26 26 C 1.50696 * 119.97585 * 179.97438 * 25 24 19 27 27 O 1.42906 * 109.47254 * 64.99555 * 26 25 24 28 28 Si 1.86298 * 109.47535 * 184.99704 * 26 25 24 29 29 C 1.38130 * 120.05525 * 359.67677 * 25 24 19 30 30 C 1.52997 * 109.47143 * 59.99991 * 10 9 8 31 31 C 1.52989 * 109.47529 * 299.99952 * 6 4 3 32 32 H 1.08998 * 109.46939 * 299.99720 * 1 2 3 33 33 H 1.08992 * 109.47545 * 60.00076 * 1 2 3 34 34 H 1.09003 * 109.46618 * 180.02562 * 1 2 3 35 35 H 1.08998 * 109.46939 * 240.00280 * 2 1 3 36 36 H 1.08995 * 109.46847 * 119.99715 * 2 1 3 37 37 H 1.09002 * 109.47097 * 60.00192 * 8 6 4 38 38 H 1.09001 * 109.47600 * 299.99953 * 8 6 4 39 39 H 1.08995 * 109.46644 * 180.02562 * 9 8 6 40 40 H 1.08992 * 109.47290 * 59.99980 * 9 8 6 41 41 H 1.09001 * 109.47272 * 304.99906 * 12 10 9 42 42 H 1.08998 * 109.47097 * 64.99565 * 12 10 9 43 43 H 1.08008 * 120.03229 * 359.97438 * 18 17 16 44 44 H 1.08002 * 119.94753 * 179.97438 * 24 19 18 45 45 H 1.09003 * 109.47199 * 304.99726 * 26 25 24 46 46 H 0.96696 * 113.99299 * 60.00265 * 27 26 25 47 47 H 1.48509 * 109.99832 * 58.68180 * 28 26 25 48 48 H 1.48499 * 110.00202 * 180.02562 * 28 26 25 49 49 H 1.08000 * 120.02796 * 180.32410 * 29 25 24 50 50 H 1.09002 * 109.47153 * 60.00035 * 30 10 9 51 51 H 1.09001 * 109.47289 * 180.02562 * 30 10 9 52 52 H 1.09002 * 109.47374 * 300.00001 * 31 6 4 53 53 H 1.09000 * 109.47099 * 59.99768 * 31 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5868 -0.0005 6 6 3.9206 2.9375 -0.0012 7 1 3.5849 3.4699 0.8889 8 6 5.4485 2.8575 -0.0010 9 6 6.0333 4.2714 -0.0010 10 6 5.5617 5.0183 -1.2503 11 9 5.9930 4.3352 -2.3926 12 6 6.1469 6.4319 -1.2507 13 16 5.4717 7.3656 -2.6517 14 8 5.9586 6.8432 -3.8802 15 8 4.0864 7.6186 -2.4610 16 8 6.1217 8.7374 -2.5425 17 6 7.4245 8.7640 -2.9284 18 6 7.7522 9.0274 -4.2502 19 6 9.0774 9.0534 -4.6402 20 6 9.4342 9.3389 -6.0763 21 9 8.2643 9.5434 -6.8157 22 9 10.2318 10.4866 -6.1393 23 9 10.1379 8.2524 -6.6069 24 6 10.0764 8.8177 -3.7142 25 6 9.7523 8.5548 -2.3958 26 6 10.8438 8.2977 -1.3890 27 8 11.6311 9.4794 -1.2277 28 14 10.0830 7.8304 0.2461 29 6 8.4292 8.5338 -1.9996 30 6 4.0338 5.0983 -1.2504 31 6 3.4486 3.6841 -1.2503 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 -0.3633 -1.0277 0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 5.7845 2.3249 -0.8908 38 1 5.7845 2.3258 0.8892 39 1 7.1217 4.2143 -0.0014 40 1 5.6973 4.8035 0.8888 41 1 5.8848 6.9339 -0.3194 42 1 7.2318 6.3760 -1.3404 43 1 6.9721 9.2112 -4.9742 44 1 11.1117 8.8380 -4.0210 45 1 11.4779 7.4838 -1.7405 46 1 11.1305 10.2459 -0.9164 47 1 9.2361 6.6211 0.0851 48 1 11.1490 7.5749 1.2478 49 1 8.1769 8.3337 -0.9688 50 1 3.6978 5.6304 -0.3604 51 1 3.6978 5.6299 -2.1406 52 1 3.7843 3.1518 -2.1403 53 1 2.3601 3.7411 -1.2500 There are 84 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 84 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10339942_16464698.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:28:20 Heat of formation + Delta-G solvation = -384.897548 kcal Electronic energy + Delta-G solvation = -48781.740119 eV Core-core repulsion = 42020.051767 eV Total energy + Delta-G solvation = -6761.688351 eV No. of doubly occupied orbitals = 84 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 471.120 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -51.35762 -49.08431 -48.88369 -48.80907 -42.61215 -41.79448 -40.15578 -39.12425 -38.55119 -37.69494 -37.65009 -37.45581 -34.32857 -33.75816 -32.63602 -32.18450 -32.07040 -29.16616 -27.56301 -27.27095 -25.21926 -24.88170 -24.17018 -23.55264 -22.95812 -22.04004 -21.64240 -20.86743 -20.01506 -19.77211 -19.67992 -19.24807 -18.83800 -18.61088 -18.41745 -18.01299 -17.89375 -17.71887 -17.70017 -17.18198 -17.09739 -16.70678 -16.33637 -16.20261 -16.16469 -15.78611 -15.70420 -15.44088 -15.32503 -15.24260 -15.04455 -14.97869 -14.95921 -14.90421 -14.64020 -14.55731 -14.44758 -14.22854 -14.09834 -13.99915 -13.78417 -13.72945 -13.64651 -13.53174 -13.48145 -13.39995 -13.22259 -13.19297 -13.13959 -12.92999 -12.92556 -12.62322 -12.48997 -12.24487 -12.18708 -12.05238 -11.97543 -11.75323 -11.57507 -11.36999 -11.15121 -10.78875 -10.57304 -10.33176 -5.02620 -1.40441 -0.65959 -0.37314 0.69818 1.05766 1.18605 1.41141 1.58257 1.59326 1.76465 2.00504 2.23813 2.42233 2.59236 2.75361 2.78984 3.04737 3.08869 3.17771 3.28181 3.32844 3.37030 3.45269 3.51788 3.55132 3.61193 3.68306 3.73047 3.78094 3.94523 4.00294 4.00575 4.01614 4.02279 4.13626 4.28360 4.29387 4.30833 4.39281 4.41551 4.49951 4.52488 4.61455 4.62798 4.72681 4.78405 4.79695 4.87439 4.88572 4.93781 4.99062 5.08205 5.11985 5.16479 5.23834 5.41885 6.62226 6.73812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.359 6.359 4 C 0.463 3.537 5 O -0.541 6.541 6 C -0.077 4.077 7 H 0.151 0.849 8 C -0.111 4.111 9 C -0.124 4.124 10 C 0.124 3.876 11 F -0.213 7.213 12 C -0.676 4.676 13 S 2.578 3.422 14 O -0.970 6.970 15 O -0.938 6.938 16 O -0.652 6.652 17 C 0.057 3.943 18 C -0.058 4.058 19 C -0.171 4.171 20 C 0.510 3.490 21 F -0.179 7.179 22 F -0.171 7.171 23 F -0.175 7.175 24 C -0.023 4.023 25 C -0.093 4.093 26 C -0.079 4.079 27 O -0.549 6.549 28 Si 0.752 3.248 29 C -0.087 4.087 30 C -0.177 4.177 31 C -0.111 4.111 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.095 0.905 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.054 0.946 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.133 0.867 41 H 0.218 0.782 42 H 0.169 0.831 43 H 0.153 0.847 44 H 0.163 0.837 45 H 0.126 0.874 46 H 0.399 0.601 47 H -0.244 1.244 48 H -0.294 1.294 49 H 0.189 0.811 50 H 0.141 0.859 51 H 0.076 0.924 52 H 0.057 0.943 53 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.312 3.457 9.910 10.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.275 6.275 4 C 0.308 3.692 5 O -0.431 6.431 6 C -0.095 4.095 7 H 0.168 0.832 8 C -0.148 4.148 9 C -0.162 4.162 10 C 0.105 3.895 11 F -0.193 7.193 12 C -0.805 4.805 13 S 2.677 3.323 14 O -0.969 6.969 15 O -0.936 6.936 16 O -0.610 6.610 17 C 0.015 3.985 18 C -0.078 4.078 19 C -0.173 4.173 20 C 0.456 3.544 21 F -0.160 7.160 22 F -0.152 7.152 23 F -0.156 7.156 24 C -0.042 4.042 25 C -0.093 4.093 26 C -0.188 4.188 27 O -0.357 6.357 28 Si 0.655 3.345 29 C -0.106 4.106 30 C -0.214 4.214 31 C -0.148 4.148 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.113 0.887 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.106 0.894 39 H 0.114 0.886 40 H 0.151 0.849 41 H 0.235 0.765 42 H 0.187 0.813 43 H 0.170 0.830 44 H 0.180 0.820 45 H 0.143 0.857 46 H 0.250 0.750 47 H -0.168 1.168 48 H -0.222 1.222 49 H 0.206 0.794 50 H 0.159 0.841 51 H 0.095 0.905 52 H 0.076 0.924 53 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.252 2.484 9.702 10.018 hybrid contribution 0.528 -0.820 -1.271 1.602 sum 0.276 1.664 8.431 8.598 Atomic orbital electron populations 1.21823 0.90613 1.04241 1.03822 1.23241 0.96975 0.79435 1.02346 1.86514 1.24212 1.33346 1.83441 1.24297 0.80595 0.93313 0.71034 1.90675 1.61166 1.44513 1.46723 1.21297 0.96424 0.88516 1.03297 0.83178 1.21471 0.91847 0.97656 1.03867 1.22188 1.02942 0.94576 0.96479 1.20835 0.95092 0.88126 0.85452 1.92950 1.91347 1.81742 1.53283 1.31584 1.15807 1.08723 1.24340 1.05903 0.75215 0.73907 0.77266 1.93668 1.80804 1.79394 1.43000 1.93654 1.30290 1.82423 1.87208 1.85758 1.31056 1.57678 1.86549 1.17762 0.78528 1.08971 0.93194 1.21278 0.96711 0.93859 0.95959 1.19820 0.94963 1.09874 0.92639 1.18191 0.74592 0.74566 0.87031 1.93197 1.48525 1.94866 1.79433 1.93255 1.74371 1.50725 1.96890 1.93249 1.79303 1.54972 1.88126 1.21260 1.00175 0.90877 0.91847 1.20340 0.94116 0.99870 0.95011 1.25405 0.94933 0.92481 1.05965 1.86549 1.38078 1.21274 1.89810 0.94345 0.81724 0.84941 0.73524 1.21737 0.91159 0.97111 1.00573 1.22823 0.91928 0.99107 1.07544 1.21470 1.02894 0.94292 0.96161 0.90948 0.91361 0.88668 0.91870 0.91240 0.92695 0.89432 0.88566 0.84873 0.76462 0.81336 0.82959 0.81986 0.85683 0.75018 1.16845 1.22172 0.79429 0.84079 0.90542 0.92409 0.88138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.51 10.29 71.98 0.74 1.25 16 2 C 0.05 0.07 6.19 71.98 0.45 0.52 16 3 O -0.36 -1.13 10.12 -51.44 -0.52 -1.65 16 4 C 0.46 1.92 7.26 71.24 0.52 2.44 16 5 O -0.54 -5.96 15.73 21.97 0.35 -5.61 16 6 C -0.08 0.25 2.63 -11.54 -0.03 0.22 16 7 H 0.15 -1.54 8.14 -2.39 -0.02 -1.56 16 8 C -0.11 0.33 4.37 30.60 0.13 0.46 16 9 C -0.12 1.11 5.00 30.60 0.15 1.26 16 10 C 0.12 -0.55 0.89 -10.79 -0.01 -0.56 16 11 F -0.21 -0.87 15.33 44.97 0.69 -0.18 16 12 C -0.68 6.29 4.79 71.98 0.34 6.63 16 13 S 2.58 2.62 4.41 -56.49 -0.25 2.37 16 14 O -0.97 -8.24 15.96 -118.57 -1.89 -10.13 16 15 O -0.94 -5.32 15.64 -118.57 -1.85 -7.17 16 16 O -0.65 0.85 10.05 -61.54 -0.62 0.23 16 17 C 0.06 -0.11 4.79 22.50 0.11 0.00 16 18 C -0.06 -0.09 8.43 22.36 0.19 0.10 16 19 C -0.17 -0.07 5.37 -19.88 -0.11 -0.18 16 20 C 0.51 1.63 3.32 71.24 0.24 1.86 16 21 F -0.18 -0.99 15.97 44.97 0.72 -0.27 16 22 F -0.17 -0.55 17.24 44.97 0.78 0.23 16 23 F -0.18 -0.84 17.24 44.97 0.78 -0.06 16 24 C -0.02 0.09 9.23 22.28 0.21 0.30 16 25 C -0.09 0.71 5.35 -19.88 -0.11 0.61 16 26 C -0.08 0.74 2.80 71.23 0.20 0.94 16 27 O -0.55 4.28 12.83 -148.98 -1.91 2.36 16 28 Si 0.75 -9.16 29.80 68.60 2.04 -7.11 16 29 C -0.09 0.75 7.09 22.37 0.16 0.91 16 30 C -0.18 0.74 4.32 30.61 0.13 0.87 16 31 C -0.11 0.24 5.02 30.61 0.15 0.39 16 32 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 33 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 34 H 0.09 -0.58 8.14 -2.39 -0.02 -0.60 16 35 H 0.06 0.16 8.13 -2.39 -0.02 0.14 16 36 H 0.07 0.09 8.13 -2.39 -0.02 0.07 16 37 H 0.05 0.17 7.76 -2.39 -0.02 0.15 16 38 H 0.09 -0.28 8.10 -2.39 -0.02 -0.30 16 39 H 0.10 -0.96 8.14 -2.39 -0.02 -0.98 16 40 H 0.13 -2.22 8.14 -2.39 -0.02 -2.24 16 41 H 0.22 -4.45 8.14 -2.39 -0.02 -4.47 16 42 H 0.17 -2.21 6.63 -2.39 -0.02 -2.23 16 43 H 0.15 0.36 7.15 -2.91 -0.02 0.34 16 44 H 0.16 -0.98 8.06 -2.91 -0.02 -1.00 16 45 H 0.13 -1.14 7.96 -2.39 -0.02 -1.16 16 46 H 0.40 -6.34 8.70 -74.06 -0.64 -6.99 16 47 H -0.24 3.02 7.11 99.48 0.71 3.73 16 48 H -0.29 0.88 7.11 99.48 0.71 1.59 16 49 H 0.19 -3.24 4.38 -2.91 -0.01 -3.26 16 50 H 0.14 -1.64 8.14 -2.39 -0.02 -1.66 16 51 H 0.08 0.00 5.40 -2.39 -0.01 -0.01 16 52 H 0.06 0.13 7.80 -2.39 -0.02 0.11 16 53 H 0.10 -0.37 8.11 -2.39 -0.02 -0.39 16 Total: 0.00 -32.39 453.13 2.16 -30.24 By element: Atomic # 1 Polarization: -21.65 SS G_CDS: 0.39 Total: -21.25 kcal Atomic # 6 Polarization: 14.56 SS G_CDS: 3.46 Total: 18.02 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -6.45 Total: -21.98 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 2.96 Total: -0.28 kcal Atomic # 14 Polarization: -9.16 SS G_CDS: 2.04 Total: -7.11 kcal Atomic # 16 Polarization: 2.62 SS G_CDS: -0.25 Total: 2.37 kcal Total: -32.39 2.16 -30.24 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10339942_16464698.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -354.662 kcal (2) G-P(sol) polarization free energy of solvation -32.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -387.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -384.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds