Wall clock time and date at job start Mon Mar 8 2021 08:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45195 * 109.47134 * 2 1 4 4 C 1.34231 * 116.99976 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00318 * 359.97438 * 4 3 2 6 6 C 1.50703 * 120.00076 * 180.02562 * 4 3 2 7 7 H 1.08997 * 112.85230 * 48.79860 * 6 4 3 8 8 C 1.53782 * 113.61358 * 179.97438 * 6 4 3 9 9 C 1.53783 * 87.07936 * 140.06175 * 8 6 4 10 10 F 1.39897 * 113.61410 * 89.20071 * 9 8 6 11 11 C 1.53004 * 113.61390 * 220.01753 * 9 8 6 12 12 S 1.81402 * 109.46964 * 180.02562 * 11 9 8 13 13 O 1.42096 * 110.54229 * 68.37559 * 12 11 9 14 14 O 1.42101 * 110.54284 * 291.62168 * 12 11 9 15 15 O 1.52198 * 104.44603 * 180.02562 * 12 11 9 16 16 C 1.35895 * 114.00258 * 74.99941 * 15 12 11 17 17 C 1.38709 * 120.05826 * 89.99738 * 16 15 12 18 18 C 1.38164 * 119.94688 * 179.97438 * 17 16 15 19 19 C 1.50699 * 119.97569 * 179.97438 * 18 17 16 20 20 F 1.39900 * 109.47157 * 270.02470 * 19 18 17 21 21 F 1.39905 * 109.47105 * 30.02021 * 19 18 17 22 22 F 1.39897 * 109.47566 * 150.02187 * 19 18 17 23 23 C 1.38245 * 120.05645 * 0.02562 * 18 17 16 24 24 C 1.38290 * 120.10982 * 359.97438 * 23 18 17 25 25 C 1.50702 * 119.97267 * 180.02562 * 24 23 18 26 26 O 1.42900 * 109.46766 * 299.99946 * 25 24 23 27 27 Si 1.86299 * 109.47164 * 180.02562 * 25 24 23 28 28 C 1.38126 * 120.05768 * 0.02562 * 24 23 18 29 29 C 1.53780 * 87.08201 * 334.56587 * 9 8 6 30 30 H 1.09001 * 109.47239 * 300.00767 * 1 2 3 31 31 H 1.09002 * 109.46773 * 60.00035 * 1 2 3 32 32 H 1.08995 * 109.47278 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47144 * 239.99733 * 2 1 3 34 34 H 1.09002 * 109.46773 * 119.99965 * 2 1 3 35 35 H 1.08999 * 113.61492 * 25.51292 * 8 6 4 36 36 H 1.08996 * 113.61495 * 254.61039 * 8 6 4 37 37 H 1.09002 * 109.46846 * 60.00017 * 11 9 8 38 38 H 1.09004 * 109.46844 * 299.99829 * 11 9 8 39 39 H 1.08001 * 120.02803 * 0.02562 * 17 16 15 40 40 H 1.07995 * 119.94685 * 179.72562 * 23 18 17 41 41 H 1.08996 * 109.47125 * 60.00139 * 25 24 23 42 42 H 0.96698 * 114.00014 * 299.99705 * 26 25 24 43 43 H 1.48496 * 109.99828 * 179.97438 * 27 25 24 44 44 H 1.48500 * 110.00154 * 301.32044 * 27 25 24 45 45 H 1.07998 * 120.03128 * 180.02562 * 28 24 23 46 46 H 1.09004 * 113.61288 * 139.98275 * 29 9 8 47 47 H 1.08990 * 113.61667 * 270.88240 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9208 2.9374 0.0012 7 1 3.4709 3.5812 0.7569 8 6 5.4583 2.9680 0.0024 9 6 5.3573 4.1439 -0.9835 10 9 5.2854 5.3939 -0.3594 11 6 6.4003 4.0973 -2.1020 12 16 6.1806 5.5294 -3.1936 13 8 6.5258 6.7300 -2.5165 14 8 4.9635 5.4213 -3.9191 15 8 7.2630 5.3699 -4.2516 16 6 6.9975 4.4071 -5.1733 17 6 6.3079 4.7273 -6.3334 18 6 6.0397 3.7467 -7.2692 19 6 5.2901 4.0937 -8.5296 20 9 3.9169 3.9358 -8.3139 21 9 5.5573 5.4213 -8.8807 22 9 5.7000 3.2461 -9.5644 23 6 6.4576 2.4473 -7.0497 24 6 7.1452 2.1256 -5.8938 25 6 7.5998 0.7082 -5.6580 26 8 6.4641 -0.1589 -5.6372 27 14 8.4891 0.6050 -4.0243 28 6 7.4158 3.1022 -4.9553 29 6 3.9874 3.5790 -1.3948 30 1 -0.3634 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 5.9131 2.0756 -0.4276 36 1 5.8888 3.2416 0.9656 37 1 6.2760 3.1795 -2.6766 38 1 7.3998 4.1218 -1.6678 39 1 5.9817 5.7423 -6.5056 40 1 6.2431 1.6814 -7.7802 41 1 8.2740 0.4049 -6.4589 42 1 5.8202 0.0528 -4.9476 43 1 8.9419 -0.7879 -3.7797 44 1 9.6538 1.5262 -4.0209 45 1 7.9533 2.8505 -4.0529 46 1 3.2304 4.3459 -1.5595 47 1 4.0401 2.8537 -2.2067 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10339942_16464788.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:31:53 Heat of formation + Delta-G solvation = -346.081763 kcal Electronic energy + Delta-G solvation = -44415.298921 eV Core-core repulsion = 37966.368987 eV Total energy + Delta-G solvation = -6448.929935 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 443.088 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -51.32813 -49.14626 -48.85080 -48.78128 -42.61125 -41.75079 -40.15532 -39.26274 -38.53443 -37.66209 -37.44881 -37.41411 -33.88234 -32.74958 -32.18581 -31.87683 -27.61930 -27.33441 -27.16685 -26.79048 -24.92545 -23.87962 -22.98520 -22.34172 -21.59574 -20.77478 -20.02440 -19.76641 -19.65297 -19.23726 -19.05801 -18.57821 -18.38577 -18.00385 -17.75995 -17.68379 -17.52465 -17.24670 -16.93858 -16.41472 -16.27405 -16.13690 -16.03198 -15.74854 -15.67278 -15.49247 -15.31428 -15.21139 -14.95152 -14.93053 -14.69486 -14.61296 -14.54094 -14.45173 -14.26777 -14.25464 -13.95531 -13.67787 -13.62128 -13.55987 -13.49661 -13.46295 -13.36794 -12.99420 -12.92249 -12.88209 -12.82865 -12.45624 -12.37348 -12.23938 -12.10077 -11.80295 -11.49057 -11.41436 -11.33627 -10.82337 -10.60483 -10.30679 -5.13568 -1.38383 -0.66187 -0.36939 0.70961 1.09551 1.14935 1.42224 1.57076 1.65199 1.76331 1.97104 2.30050 2.45005 2.61042 2.74661 2.78838 2.81695 2.94421 3.07651 3.20328 3.27262 3.32380 3.36179 3.41262 3.56016 3.63638 3.69499 3.78567 3.93072 4.00504 4.04704 4.09648 4.18878 4.38853 4.39287 4.40475 4.43637 4.46216 4.50482 4.56432 4.64639 4.72714 4.74288 4.86907 4.88199 4.94609 5.13351 5.16957 5.18812 5.49120 6.69920 6.72993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.363 6.363 4 C 0.477 3.523 5 O -0.523 6.523 6 C -0.113 4.113 7 H 0.142 0.858 8 C -0.113 4.113 9 C 0.091 3.909 10 F -0.191 7.191 11 C -0.662 4.662 12 S 2.578 3.422 13 O -0.953 6.953 14 O -0.957 6.957 15 O -0.660 6.660 16 C 0.058 3.942 17 C -0.053 4.053 18 C -0.168 4.168 19 C 0.511 3.489 20 F -0.174 7.174 21 F -0.179 7.179 22 F -0.172 7.172 23 C -0.020 4.020 24 C -0.090 4.090 25 C -0.068 4.068 26 O -0.546 6.546 27 Si 0.751 3.249 28 C -0.093 4.093 29 C -0.150 4.150 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.143 0.857 36 H 0.109 0.891 37 H 0.198 0.802 38 H 0.198 0.802 39 H 0.152 0.848 40 H 0.166 0.834 41 H 0.130 0.870 42 H 0.399 0.601 43 H -0.293 1.293 44 H -0.264 1.264 45 H 0.182 0.818 46 H 0.104 0.896 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.229 -6.632 2.862 7.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.280 6.280 4 C 0.321 3.679 5 O -0.412 6.412 6 C -0.132 4.132 7 H 0.159 0.841 8 C -0.151 4.151 9 C 0.071 3.929 10 F -0.171 7.171 11 C -0.790 4.790 12 S 2.677 3.323 13 O -0.951 6.951 14 O -0.955 6.955 15 O -0.618 6.618 16 C 0.017 3.983 17 C -0.073 4.073 18 C -0.170 4.170 19 C 0.457 3.543 20 F -0.155 7.155 21 F -0.161 7.161 22 F -0.153 7.153 23 C -0.038 4.038 24 C -0.091 4.091 25 C -0.178 4.178 26 O -0.354 6.354 27 Si 0.655 3.345 28 C -0.112 4.112 29 C -0.187 4.187 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.113 0.887 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.161 0.839 36 H 0.127 0.873 37 H 0.216 0.784 38 H 0.215 0.785 39 H 0.170 0.830 40 H 0.184 0.816 41 H 0.148 0.852 42 H 0.250 0.750 43 H -0.221 1.221 44 H -0.190 1.190 45 H 0.198 0.802 46 H 0.123 0.877 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.899 -6.571 2.487 7.083 hybrid contribution -0.011 0.239 -0.438 0.499 sum 0.888 -6.332 2.049 6.714 Atomic orbital electron populations 1.21840 0.91405 1.04119 1.03551 1.23252 0.96463 0.79194 1.02899 1.86536 1.24470 1.33650 1.83354 1.23560 0.80575 0.92287 0.71455 1.90669 1.60789 1.43504 1.46196 1.22576 0.98056 0.90965 1.01596 0.84053 1.23678 0.92975 0.97466 1.00977 1.21421 0.96072 0.81863 0.93505 1.92990 1.97126 1.43079 1.83924 1.31367 1.11913 1.23145 1.12618 1.05849 0.73388 0.77539 0.75533 1.93649 1.82613 1.43939 1.74876 1.93658 1.46326 1.87426 1.68118 1.85796 1.67247 1.59971 1.48818 1.17749 1.04242 0.86005 0.90320 1.21204 0.93578 1.01202 0.91337 1.19808 1.05488 0.96471 0.95215 1.18184 0.77656 0.74479 0.84030 1.93265 1.32284 1.95214 1.94784 1.93220 1.93676 1.36119 1.93038 1.93226 1.90138 1.70770 1.61158 1.21270 0.91460 0.94050 0.97064 1.20286 0.98664 0.96856 0.93285 1.25218 0.94446 0.85186 1.12993 1.86555 1.33956 1.54298 1.60562 0.94427 0.81860 0.79292 0.78891 1.21730 0.97796 0.89816 1.01883 1.23953 0.95636 1.02124 0.96996 0.91661 0.91343 0.88676 0.90515 0.91286 0.83873 0.87287 0.78417 0.78486 0.83022 0.81634 0.85232 0.75007 1.22057 1.19036 0.80157 0.87744 0.84275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.88 10.29 71.98 0.74 1.63 16 2 C 0.06 -0.17 6.19 71.98 0.45 0.27 16 3 O -0.36 0.27 10.22 -51.43 -0.53 -0.25 16 4 C 0.48 -0.99 7.49 71.24 0.53 -0.46 16 5 O -0.52 -0.80 15.65 21.98 0.34 -0.45 16 6 C -0.11 0.75 4.24 -11.01 -0.05 0.70 16 7 H 0.14 -1.10 8.14 -2.39 -0.02 -1.12 16 8 C -0.11 1.09 6.86 31.12 0.21 1.30 16 9 C 0.09 -0.60 1.62 -10.27 -0.02 -0.62 16 10 F -0.19 -0.15 16.28 44.97 0.73 0.58 16 11 C -0.66 7.05 5.18 71.98 0.37 7.42 16 12 S 2.58 2.19 4.89 -56.49 -0.28 1.91 16 13 O -0.95 -9.81 17.53 -118.57 -2.08 -11.89 16 14 O -0.96 -3.81 16.26 -118.57 -1.93 -5.74 16 15 O -0.66 0.18 10.05 -61.46 -0.62 -0.44 16 16 C 0.06 -0.15 4.80 22.51 0.11 -0.04 16 17 C -0.05 0.00 8.40 22.36 0.19 0.19 16 18 C -0.17 0.25 5.45 -19.88 -0.11 0.14 16 19 C 0.51 0.72 3.36 71.24 0.24 0.96 16 20 F -0.17 -0.58 17.30 44.97 0.78 0.19 16 21 F -0.18 -0.67 16.46 44.97 0.74 0.07 16 22 F -0.17 -0.23 16.46 44.97 0.74 0.51 16 23 C -0.02 0.11 8.96 22.28 0.20 0.31 16 24 C -0.09 0.79 5.39 -19.88 -0.11 0.68 16 25 C -0.07 0.68 2.82 71.24 0.20 0.88 16 26 O -0.55 4.88 12.77 -148.98 -1.90 2.98 16 27 Si 0.75 -7.95 29.79 68.60 2.04 -5.91 16 28 C -0.09 0.82 7.08 22.37 0.16 0.98 16 29 C -0.15 1.13 7.08 31.12 0.22 1.35 16 30 H 0.06 -0.33 8.14 -2.39 -0.02 -0.35 16 31 H 0.07 -0.37 8.14 -2.39 -0.02 -0.39 16 32 H 0.09 -0.80 8.14 -2.39 -0.02 -0.82 16 33 H 0.08 -0.32 8.13 -2.39 -0.02 -0.34 16 34 H 0.07 -0.19 8.13 -2.39 -0.02 -0.21 16 35 H 0.14 -1.91 7.40 -2.39 -0.02 -1.93 16 36 H 0.11 -1.13 8.14 -2.39 -0.02 -1.15 16 37 H 0.20 -3.90 6.40 -2.39 -0.02 -3.92 16 38 H 0.20 -3.42 8.14 -2.39 -0.02 -3.44 16 39 H 0.15 0.10 7.60 -2.91 -0.02 0.08 16 40 H 0.17 -1.28 7.60 -2.91 -0.02 -1.30 16 41 H 0.13 -1.27 7.96 -2.39 -0.02 -1.29 16 42 H 0.40 -6.84 8.70 -74.06 -0.64 -7.48 16 43 H -0.29 0.44 7.11 99.48 0.71 1.15 16 44 H -0.26 1.92 7.11 99.48 0.71 2.62 16 45 H 0.18 -2.84 4.32 -2.91 -0.01 -2.86 16 46 H 0.10 -0.64 8.14 -2.39 -0.02 -0.66 16 47 H 0.14 -1.73 7.92 -2.39 -0.02 -1.75 16 Total: 0.00 -29.75 424.22 1.86 -27.89 By element: Atomic # 1 Polarization: -25.63 SS G_CDS: 0.47 Total: -25.16 kcal Atomic # 6 Polarization: 12.37 SS G_CDS: 3.34 Total: 15.71 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: -6.71 Total: -15.80 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 2.99 Total: 1.36 kcal Atomic # 14 Polarization: -7.95 SS G_CDS: 2.04 Total: -5.91 kcal Atomic # 16 Polarization: 2.19 SS G_CDS: -0.28 Total: 1.91 kcal Total: -29.75 1.86 -27.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10339942_16464788.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -318.188 kcal (2) G-P(sol) polarization free energy of solvation -29.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -347.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -346.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds