Wall clock time and date at job start Mon Mar 8 2021 09:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 113.99653 * 2 1 4 4 C 1.53006 * 112.85008 * 65.89489 * 3 2 1 5 5 F 1.39896 * 109.47125 * 283.58465 * 4 3 2 6 6 F 1.39905 * 109.46508 * 43.58489 * 4 3 2 7 7 F 1.39900 * 109.47111 * 163.58120 * 4 3 2 8 8 C 1.53779 * 113.61541 * 294.70062 * 3 2 1 9 9 C 1.53779 * 87.08080 * 270.88610 * 8 3 2 10 10 H 1.09002 * 113.61290 * 219.93663 * 9 8 3 11 11 C 1.52993 * 113.61512 * 89.11637 * 9 8 3 12 12 S 1.81404 * 109.47139 * 175.00056 * 11 9 8 13 13 O 1.42098 * 110.54255 * 68.37381 * 12 11 9 14 14 O 1.42103 * 110.54075 * 291.62372 * 12 11 9 15 15 O 1.52198 * 104.45122 * 179.97438 * 12 11 9 16 16 C 1.35906 * 113.99777 * 75.00213 * 15 12 11 17 17 C 1.38711 * 120.05893 * 90.00136 * 16 15 12 18 18 C 1.38158 * 119.94451 * 180.02562 * 17 16 15 19 19 C 1.50704 * 119.97413 * 179.97438 * 18 17 16 20 20 F 1.39901 * 109.47202 * 269.97978 * 19 18 17 21 21 F 1.39898 * 109.46667 * 29.97830 * 19 18 17 22 22 F 1.39896 * 109.47248 * 149.97669 * 19 18 17 23 23 C 1.38249 * 120.05869 * 359.97438 * 18 17 16 24 24 C 1.38287 * 120.10710 * 0.02562 * 23 18 17 25 25 C 1.50705 * 119.96909 * 179.97438 * 24 23 18 26 26 O 1.42895 * 109.47504 * 300.00287 * 25 24 23 27 27 Si 1.86300 * 109.47001 * 180.02562 * 25 24 23 28 28 C 1.38123 * 120.06101 * 0.02562 * 24 23 18 29 29 C 1.53773 * 113.61225 * 197.20229 * 3 2 1 30 30 H 1.09002 * 109.47135 * 56.91526 * 1 2 3 31 31 H 1.09009 * 109.47085 * 176.91734 * 1 2 3 32 32 H 1.09001 * 109.47474 * 296.91108 * 1 2 3 33 33 H 1.08998 * 113.61363 * 156.33376 * 8 3 2 34 34 H 1.09005 * 113.69144 * 25.44332 * 8 3 2 35 35 H 1.08998 * 109.47758 * 55.00399 * 11 9 8 36 36 H 1.08998 * 109.47544 * 294.99881 * 11 9 8 37 37 H 1.07995 * 120.02711 * 359.97438 * 17 16 15 38 38 H 1.07998 * 119.94280 * 179.74492 * 23 18 17 39 39 H 1.09001 * 109.46996 * 60.00401 * 25 24 23 40 40 H 0.96696 * 114.00125 * 180.02562 * 26 25 24 41 41 H 1.48500 * 110.00002 * 60.00328 * 27 25 24 42 42 H 1.48500 * 110.00195 * 181.32200 * 27 25 24 43 43 H 1.07999 * 120.03349 * 179.97438 * 28 24 23 44 44 H 1.08996 * 113.61880 * 334.56797 * 29 3 2 45 45 H 1.09004 * 113.61692 * 203.66256 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7257 2.0825 1.2870 5 9 0.4089 2.5544 1.2655 6 9 1.9009 1.2389 2.3893 7 9 2.6074 3.1645 1.3831 8 6 1.7228 2.1077 -1.2801 9 6 2.9995 1.4813 -1.8652 10 1 3.5962 2.1768 -2.4554 11 6 2.7569 0.1510 -2.5810 12 16 4.3001 -0.4116 -3.3509 13 8 5.2480 -0.7782 -2.3578 14 8 4.6604 0.4427 -4.4278 15 8 3.9322 -1.7273 -4.0217 16 6 3.2112 -1.5823 -5.1647 17 6 3.8598 -1.4681 -6.3855 18 6 3.1246 -1.3204 -7.5458 19 6 3.8286 -1.1956 -8.8725 20 9 4.0835 0.1537 -9.1401 21 9 5.0373 -1.8985 -8.8268 22 9 3.0184 -1.7263 -9.8820 23 6 1.7436 -1.2868 -7.4910 24 6 1.0946 -1.4004 -6.2752 25 6 -0.4109 -1.3628 -6.2190 26 8 -0.8763 -0.1180 -6.7441 27 14 -0.9709 -1.5385 -4.4508 28 6 1.8251 -1.5473 -5.1121 29 6 3.4903 1.3208 -0.4167 30 1 -0.3633 0.5610 -0.8611 31 1 -0.3634 -1.0263 -0.0553 32 1 -0.3634 0.4651 0.9164 33 1 1.7892 3.1870 -1.1431 34 1 0.8113 1.8015 -1.7935 35 1 1.9955 0.2853 -3.3494 36 1 2.4182 -0.5931 -1.8601 37 1 4.9386 -1.4939 -6.4288 38 1 1.1708 -1.1670 -8.3987 39 1 -0.8172 -2.1821 -6.8122 40 1 -1.8387 -0.0240 -6.7385 41 1 -0.4236 -0.4271 -3.6319 42 1 -2.4544 -1.5350 -4.3851 43 1 1.3178 -1.6356 -4.1627 44 1 4.0057 0.3783 -0.2322 45 1 4.0400 2.1851 -0.0438 There are 79 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 79 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10339942_17541816.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:05:35 Heat of formation + Delta-G solvation = -400.337438 kcal Electronic energy + Delta-G solvation = -46315.762977 eV Core-core repulsion = 39372.480721 eV Total energy + Delta-G solvation = -6943.282256 eV No. of doubly occupied orbitals = 79 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 451.070 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -51.31957 -51.28280 -48.83276 -48.81977 -48.78047 -48.74844 -42.56716 -41.50769 -40.06649 -38.52703 -37.74739 -37.46342 -37.33149 -33.96210 -32.21868 -31.81618 -28.46045 -27.97094 -27.48233 -27.24612 -26.84293 -24.92471 -23.67177 -22.89281 -21.72629 -20.73400 -20.06492 -19.77446 -19.69867 -19.64099 -19.58168 -19.29872 -19.12844 -18.64658 -18.35997 -18.27963 -17.89466 -17.34173 -17.08146 -16.53081 -16.45256 -15.96010 -15.87330 -15.72821 -15.67717 -15.62828 -15.55157 -15.49129 -15.37413 -15.20025 -15.18255 -14.94619 -14.94387 -14.92189 -14.90866 -14.75857 -14.66478 -14.50122 -14.39608 -14.04224 -13.90716 -13.69051 -13.54373 -13.42767 -13.34465 -13.30115 -13.21032 -13.20291 -12.96956 -12.39124 -12.34170 -12.24043 -12.17964 -11.95203 -11.50165 -10.87263 -10.78581 -10.61951 -10.23725 -4.94047 -1.31833 -0.62698 -0.33181 0.74385 1.17687 1.43464 1.49021 1.56568 1.79758 1.91611 2.03383 2.31588 2.45700 2.51068 2.56340 2.67550 2.78343 2.80553 2.96485 3.08285 3.20289 3.20939 3.27019 3.37223 3.46660 3.47207 3.55627 3.63516 3.80473 3.87593 3.97825 4.16079 4.21988 4.30384 4.36898 4.40161 4.42829 4.47302 4.51301 4.53503 4.61836 4.65845 4.73063 4.77445 4.78461 4.86040 5.19473 5.66092 6.56575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.002 4.002 2 O -0.340 6.340 3 C 0.038 3.962 4 C 0.433 3.567 5 F -0.183 7.183 6 F -0.186 7.186 7 F -0.176 7.176 8 C -0.130 4.130 9 C -0.097 4.097 10 H 0.125 0.875 11 C -0.631 4.631 12 S 2.587 3.413 13 O -0.948 6.948 14 O -0.969 6.969 15 O -0.656 6.656 16 C 0.060 3.940 17 C -0.055 4.055 18 C -0.171 4.171 19 C 0.512 3.488 20 F -0.177 7.177 21 F -0.177 7.177 22 F -0.170 7.170 23 C -0.023 4.023 24 C -0.052 4.052 25 C -0.085 4.085 26 O -0.551 6.551 27 Si 0.725 3.275 28 C -0.091 4.091 29 C -0.135 4.135 30 H 0.067 0.933 31 H 0.123 0.877 32 H 0.045 0.955 33 H 0.125 0.875 34 H 0.110 0.890 35 H 0.164 0.836 36 H 0.174 0.826 37 H 0.154 0.846 38 H 0.166 0.834 39 H 0.115 0.885 40 H 0.402 0.598 41 H -0.256 1.256 42 H -0.278 1.278 43 H 0.179 0.821 44 H 0.103 0.897 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.978 -2.279 -1.178 9.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 O -0.258 6.258 3 C -0.005 4.005 4 C 0.378 3.622 5 F -0.165 7.165 6 F -0.167 7.167 7 F -0.158 7.158 8 C -0.169 4.169 9 C -0.117 4.117 10 H 0.143 0.857 11 C -0.760 4.760 12 S 2.686 3.314 13 O -0.947 6.947 14 O -0.968 6.968 15 O -0.615 6.615 16 C 0.018 3.982 17 C -0.076 4.076 18 C -0.172 4.172 19 C 0.458 3.542 20 F -0.159 7.159 21 F -0.158 7.158 22 F -0.151 7.151 23 C -0.042 4.042 24 C -0.052 4.052 25 C -0.194 4.194 26 O -0.362 6.362 27 Si 0.627 3.373 28 C -0.110 4.110 29 C -0.172 4.172 30 H 0.086 0.914 31 H 0.142 0.858 32 H 0.063 0.937 33 H 0.143 0.857 34 H 0.128 0.872 35 H 0.182 0.818 36 H 0.192 0.808 37 H 0.171 0.829 38 H 0.183 0.817 39 H 0.132 0.868 40 H 0.254 0.746 41 H -0.181 1.181 42 H -0.204 1.204 43 H 0.196 0.804 44 H 0.122 0.878 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.887 -2.208 -0.705 8.220 hybrid contribution -1.044 1.096 -0.146 1.521 sum -8.931 -1.112 -0.850 9.040 Atomic orbital electron populations 1.23392 0.78675 1.05930 1.01749 1.88037 1.22083 1.21904 1.93806 1.24071 1.00032 0.86641 0.89731 1.21468 0.74185 0.78735 0.87785 1.93183 1.37071 1.89409 1.96827 1.93198 1.95019 1.71052 1.57468 1.93176 1.68918 1.57085 1.96596 1.23652 0.99400 1.01579 0.92236 1.21808 0.99961 0.94227 0.95680 0.85738 1.30785 1.21908 1.08743 1.14605 1.05641 0.77851 0.73072 0.74813 1.93633 1.58836 1.80732 1.61461 1.93653 1.82726 1.67981 1.52400 1.85761 1.74018 1.58685 1.43024 1.17680 0.89611 1.08770 0.82137 1.21201 1.02410 0.93597 0.90350 1.19812 0.95515 1.10262 0.91641 1.18139 0.76958 0.74001 0.85098 1.93259 1.94295 1.33557 1.94740 1.93219 1.47042 1.78948 1.96625 1.93222 1.72658 1.86238 1.62973 1.21274 0.91435 0.91000 1.00444 1.19245 0.95530 0.99220 0.91246 1.24973 0.91138 0.90196 1.13071 1.86526 1.29341 1.35846 1.84525 0.94611 0.80106 0.88246 0.74356 1.21629 0.90890 0.97252 1.01212 1.23629 0.91565 1.07215 0.94791 0.91420 0.85840 0.93669 0.85658 0.87159 0.81822 0.80803 0.82859 0.81660 0.86778 0.74630 1.18102 1.20383 0.80387 0.87808 0.84718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.01 10.33 113.37 1.17 1.19 16 2 O -0.34 0.91 8.35 -148.98 -1.24 -0.34 16 3 C 0.04 -0.09 0.85 -10.27 -0.01 -0.10 16 4 C 0.43 0.55 2.51 71.98 0.18 0.73 16 5 F -0.18 -0.26 15.37 44.97 0.69 0.43 16 6 F -0.19 -0.97 17.09 44.97 0.77 -0.20 16 7 F -0.18 -0.29 15.83 44.97 0.71 0.42 16 8 C -0.13 0.90 6.51 31.12 0.20 1.10 16 9 C -0.10 0.54 3.84 -10.27 -0.04 0.50 16 10 H 0.12 -0.98 8.13 -2.39 -0.02 -1.00 16 11 C -0.63 3.76 5.04 71.98 0.36 4.12 16 12 S 2.59 5.33 5.16 -56.49 -0.29 5.04 16 13 O -0.95 -8.40 18.09 -118.57 -2.14 -10.54 16 14 O -0.97 -6.42 16.26 -118.57 -1.93 -8.35 16 15 O -0.66 -0.63 10.05 -61.59 -0.62 -1.24 16 16 C 0.06 -0.03 4.80 22.51 0.11 0.08 16 17 C -0.06 -0.10 8.40 22.36 0.19 0.09 16 18 C -0.17 -0.07 5.45 -19.88 -0.11 -0.17 16 19 C 0.51 1.31 3.36 71.24 0.24 1.55 16 20 F -0.18 -0.93 17.30 44.97 0.78 -0.15 16 21 F -0.18 -0.74 16.46 44.97 0.74 0.00 16 22 F -0.17 -0.29 16.46 44.97 0.74 0.45 16 23 C -0.02 0.08 8.96 22.28 0.20 0.28 16 24 C -0.05 0.32 5.42 -19.88 -0.11 0.21 16 25 C -0.09 0.88 2.81 71.24 0.20 1.08 16 26 O -0.55 4.24 12.74 -148.98 -1.90 2.34 16 27 Si 0.73 -8.53 29.79 68.60 2.04 -6.49 16 28 C -0.09 0.56 7.08 22.37 0.16 0.72 16 29 C -0.14 0.41 6.89 31.12 0.21 0.63 16 30 H 0.07 -0.63 6.60 -2.39 -0.02 -0.65 16 31 H 0.12 -1.33 8.14 -2.38 -0.02 -1.35 16 32 H 0.04 -0.18 6.60 -2.39 -0.02 -0.20 16 33 H 0.13 -1.11 8.06 -2.39 -0.02 -1.12 16 34 H 0.11 -1.05 6.65 -2.38 -0.02 -1.07 16 35 H 0.16 -1.77 6.60 -2.39 -0.02 -1.79 16 36 H 0.17 -1.49 6.12 -2.39 -0.01 -1.51 16 37 H 0.15 0.29 7.60 -2.91 -0.02 0.27 16 38 H 0.17 -1.03 7.60 -2.91 -0.02 -1.06 16 39 H 0.11 -1.66 7.96 -2.39 -0.02 -1.68 16 40 H 0.40 -6.00 8.74 -74.06 -0.65 -6.65 16 41 H -0.26 2.51 7.11 99.48 0.71 3.22 16 42 H -0.28 1.83 7.11 99.48 0.71 2.54 16 43 H 0.18 -2.27 4.31 -2.91 -0.01 -2.28 16 44 H 0.10 -0.16 8.10 -2.39 -0.02 -0.18 16 45 H 0.13 -0.71 7.02 -2.38 -0.02 -0.73 16 Total: 0.00 -23.70 403.67 1.83 -21.87 By element: Atomic # 1 Polarization: -15.74 SS G_CDS: 0.52 Total: -15.22 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: 2.96 Total: 11.98 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: -7.84 Total: -18.13 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 4.43 Total: 0.94 kcal Atomic # 14 Polarization: -8.53 SS G_CDS: 2.04 Total: -6.49 kcal Atomic # 16 Polarization: 5.33 SS G_CDS: -0.29 Total: 5.04 kcal Total: -23.70 1.83 -21.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10339942_17541816.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -378.466 kcal (2) G-P(sol) polarization free energy of solvation -23.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -402.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -400.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds