Wall clock time and date at job start Mon Mar 8 2021 09:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46917 * 2 1 4 4 H 1.09001 * 109.47053 * 55.00058 * 3 2 1 5 5 C 1.52994 * 109.46930 * 175.00327 * 3 2 1 6 6 C 1.53007 * 109.46930 * 180.02562 * 5 3 2 7 7 C 1.52996 * 109.46743 * 299.99580 * 6 5 3 8 8 H 1.09001 * 109.47470 * 299.99896 * 7 6 5 9 9 N 1.46501 * 109.47178 * 180.02562 * 7 6 5 10 10 S 1.65599 * 120.00418 * 144.99978 * 9 7 6 11 11 O 1.42100 * 106.40241 * 311.46108 * 10 9 7 12 12 O 1.42096 * 106.40379 * 178.53729 * 10 9 7 13 13 C 1.76199 * 107.21658 * 65.00023 * 10 9 7 14 14 C 1.38238 * 120.00251 * 269.72679 * 13 10 9 15 15 C 1.38228 * 120.00121 * 179.76592 * 14 13 10 16 16 C 1.38234 * 120.00032 * 0.48826 * 15 14 13 17 17 C 1.50706 * 120.00191 * 179.77047 * 16 15 14 18 18 O 1.42893 * 109.47299 * 120.01887 * 17 16 15 19 19 Si 1.86306 * 109.46850 * 0.02562 * 17 16 15 20 20 C 1.38230 * 119.99845 * 359.78460 * 16 15 14 21 21 C 1.38234 * 120.00019 * 90.00010 * 13 10 9 22 22 C 1.53001 * 109.47228 * 60.00041 * 7 6 5 23 23 C 1.52996 * 109.46743 * 294.99907 * 3 2 1 24 24 H 1.08991 * 109.47298 * 60.00386 * 1 2 3 25 25 H 1.09004 * 109.46810 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47162 * 300.00028 * 1 2 3 27 27 H 1.09003 * 109.47162 * 239.99972 * 2 1 3 28 28 H 1.08999 * 109.47594 * 119.99486 * 2 1 3 29 29 H 1.09000 * 109.47961 * 59.99793 * 5 3 2 30 30 H 1.08998 * 109.47219 * 299.99176 * 5 3 2 31 31 H 1.08999 * 109.47294 * 180.02562 * 6 5 3 32 32 H 1.09001 * 109.47053 * 59.99732 * 6 5 3 33 33 H 0.97001 * 119.99713 * 325.00184 * 9 7 6 34 34 H 1.08004 * 119.99572 * 0.02562 * 14 13 10 35 35 H 1.08004 * 120.00400 * 180.25458 * 15 14 13 36 36 H 1.09000 * 109.47006 * 240.02157 * 17 16 15 37 37 H 0.96701 * 114.00349 * 300.00249 * 18 17 16 38 38 H 1.48501 * 109.99711 * 180.02562 * 19 17 16 39 39 H 1.48494 * 109.99908 * 301.32195 * 19 17 16 40 40 H 1.08005 * 119.99901 * 179.97438 * 20 16 15 41 41 H 1.07999 * 120.00005 * 0.02562 * 21 13 10 42 42 H 1.09004 * 109.46770 * 60.00306 * 22 7 6 43 43 H 1.09005 * 109.47047 * 179.97438 * 22 7 6 44 44 H 1.09001 * 109.47470 * 299.99896 * 23 3 2 45 45 H 1.09003 * 109.47583 * 60.00091 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5647 1.4444 0.1256 6 6 4.0747 2.8870 0.1263 7 6 3.6698 3.5715 -1.1808 8 1 4.1045 3.0329 -2.0228 9 7 4.1586 4.9526 -1.1805 10 16 4.6693 5.6505 -2.5927 11 8 5.5545 4.7211 -3.2024 12 8 5.0430 6.9829 -2.2697 13 6 3.2666 5.7703 -3.6523 14 6 2.9646 4.7365 -4.5188 15 6 1.8614 4.8284 -5.3467 16 6 1.0659 5.9585 -5.3152 17 6 -0.1339 6.0610 -6.2214 18 8 -1.3153 6.2127 -5.4322 19 14 -0.2689 4.5136 -7.2502 20 6 1.3712 6.9947 -4.4528 21 6 2.4714 6.9006 -3.6212 22 6 2.1450 3.5696 -1.3065 23 6 1.6352 2.1265 -1.3074 24 1 -0.3633 0.5137 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 3.9995 0.9054 -0.7161 30 1 3.8532 0.9572 1.0570 31 1 5.1610 2.8884 0.2153 32 1 3.6400 3.4256 0.9683 33 1 4.1830 5.4582 -0.3531 34 1 3.5882 3.8551 -4.5460 35 1 1.6230 4.0189 -6.0207 36 1 -0.0213 6.9245 -6.8770 37 1 -1.4790 5.4790 -4.8240 38 1 -1.4479 4.6024 -8.1487 39 1 0.9671 4.3272 -8.0518 40 1 0.7499 7.8779 -4.4286 41 1 2.7101 7.7104 -2.9477 42 1 1.7104 4.1083 -0.4645 43 1 1.8566 4.0577 -2.2375 44 1 2.0698 1.5875 -2.1492 45 1 0.5488 2.1252 -1.3970 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_10466082_13421422.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:03:24 Heat of formation + Delta-G solvation = -99.365524 kcal Electronic energy + Delta-G solvation = -26957.067556 eV Core-core repulsion = 23259.961130 eV Total energy + Delta-G solvation = -3697.106427 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 326.138 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -40.80722 -40.26846 -38.23632 -37.82144 -36.85791 -36.50216 -33.13057 -33.09680 -32.30034 -31.82697 -28.92226 -27.30981 -24.67572 -24.15179 -23.65481 -23.03204 -21.87850 -21.12779 -20.45368 -19.26992 -18.60507 -18.20801 -17.64985 -16.93262 -16.55432 -16.19933 -16.01884 -15.90166 -15.74897 -15.47714 -15.21466 -14.89712 -14.64354 -14.49155 -14.45966 -14.22008 -14.05506 -13.90018 -13.44149 -13.14355 -13.10173 -13.04199 -12.93502 -12.71196 -12.49311 -12.45509 -12.44050 -12.20150 -12.00042 -11.85342 -11.76664 -11.51583 -11.31842 -11.19827 -10.77754 -10.49916 -10.35161 -10.20621 -5.19915 -0.71630 -0.39496 0.11551 1.09394 1.48522 1.83079 1.86523 2.28869 2.73673 3.21491 3.24703 3.38093 3.50823 3.57291 3.64147 3.71295 3.73830 3.92440 3.99671 4.08197 4.16846 4.20900 4.26264 4.28717 4.30944 4.38125 4.42547 4.50970 4.52015 4.63043 4.65012 4.73772 4.75578 4.87203 4.90980 4.92228 5.01191 5.03565 5.07942 5.11143 5.13854 5.16617 5.18518 5.27553 5.39570 5.47515 5.61667 5.86780 6.35461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.121 4.121 3 C -0.091 4.091 4 H 0.072 0.928 5 C -0.114 4.114 6 C -0.122 4.122 7 C 0.148 3.852 8 H 0.093 0.907 9 N -1.112 6.112 10 S 2.693 3.307 11 O -0.953 6.953 12 O -0.957 6.957 13 C -0.673 4.673 14 C -0.014 4.014 15 C -0.139 4.139 16 C -0.063 4.063 17 C -0.077 4.077 18 O -0.535 6.535 19 Si 0.690 3.310 20 C -0.113 4.113 21 C -0.015 4.015 22 C -0.142 4.142 23 C -0.114 4.114 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.420 0.580 34 H 0.144 0.856 35 H 0.137 0.863 36 H 0.120 0.880 37 H 0.380 0.620 38 H -0.251 1.251 39 H -0.255 1.255 40 H 0.137 0.863 41 H 0.143 0.857 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.066 0.934 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.970 -4.415 2.713 6.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C -0.109 4.109 4 H 0.090 0.910 5 C -0.153 4.153 6 C -0.161 4.161 7 C 0.041 3.959 8 H 0.111 0.889 9 N -0.871 5.871 10 S 2.782 3.218 11 O -0.943 6.943 12 O -0.947 6.947 13 C -0.760 4.760 14 C -0.033 4.033 15 C -0.157 4.157 16 C -0.063 4.063 17 C -0.188 4.188 18 O -0.340 6.340 19 Si 0.591 3.409 20 C -0.132 4.132 21 C -0.035 4.035 22 C -0.181 4.181 23 C -0.152 4.152 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.255 0.745 34 H 0.162 0.838 35 H 0.154 0.846 36 H 0.137 0.863 37 H 0.228 0.772 38 H -0.176 1.176 39 H -0.180 1.180 40 H 0.155 0.845 41 H 0.161 0.839 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.085 0.915 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.167 -4.019 1.181 5.251 hybrid contribution -0.525 0.863 0.194 1.029 sum -3.692 -3.156 1.376 5.048 Atomic orbital electron populations 1.21828 0.95807 1.01709 1.01902 1.21573 0.95998 0.96115 1.02149 1.21246 0.95331 0.96145 0.98178 0.91000 1.21592 0.95269 0.95735 1.02682 1.21792 1.01713 0.96170 0.96439 1.20950 0.94069 0.80404 1.00494 0.88892 1.55619 1.83104 1.22912 1.25441 1.01949 0.73693 0.73222 0.72928 1.93610 1.60335 1.64015 1.76341 1.93616 1.81333 1.36279 1.83439 1.31003 1.23587 1.03011 1.18367 1.20888 0.94664 0.96574 0.91219 1.21150 0.96190 0.97833 1.00526 1.20732 0.95863 0.93941 0.95806 1.25224 0.83701 1.12082 0.97788 1.86537 1.40995 1.49355 1.57148 0.94730 0.81131 0.82671 0.82339 1.21175 0.97144 0.99065 0.95846 1.20987 0.91674 0.94970 0.95836 1.22163 0.94992 0.97899 1.03054 1.21624 1.01255 0.94555 0.97774 0.92430 0.92811 0.92821 0.91875 0.91969 0.91412 0.91272 0.90858 0.91083 0.74538 0.83806 0.84618 0.86264 0.77235 1.17572 1.17982 0.84534 0.83947 0.90989 0.91288 0.91536 0.91071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.37 9.67 37.16 0.36 0.73 16 2 C -0.12 0.30 5.40 -26.73 -0.14 0.16 16 3 C -0.09 0.26 2.19 -90.62 -0.20 0.06 16 4 H 0.07 -0.18 8.14 -51.93 -0.42 -0.60 16 5 C -0.11 0.31 5.20 -26.73 -0.14 0.17 16 6 C -0.12 0.32 5.45 -26.73 -0.15 0.17 16 7 C 0.15 -0.33 2.79 -67.93 -0.19 -0.52 16 8 H 0.09 -0.19 7.50 -51.93 -0.39 -0.58 16 9 N -1.11 1.95 5.47 -4.89 -0.03 1.92 16 10 S 2.69 3.22 5.72 -107.50 -0.61 2.61 16 11 O -0.95 -3.80 16.61 -57.17 -0.95 -4.74 16 12 O -0.96 -4.00 17.28 -57.17 -0.99 -4.99 16 13 C -0.67 -0.11 5.06 -39.58 -0.20 -0.31 16 14 C -0.01 0.01 8.60 -39.58 -0.34 -0.33 16 15 C -0.14 0.19 8.67 -39.59 -0.34 -0.15 16 16 C -0.06 0.06 5.39 -104.62 -0.56 -0.51 16 17 C -0.08 0.11 2.82 36.01 0.10 0.21 16 18 O -0.54 0.60 12.77 -35.23 -0.45 0.15 16 19 Si 0.69 -1.43 29.79 -169.99 -5.06 -6.49 16 20 C -0.11 0.04 9.61 -39.59 -0.38 -0.34 16 21 C -0.02 0.00 9.52 -39.58 -0.38 -0.38 16 22 C -0.14 0.44 5.53 -26.71 -0.15 0.29 16 23 C -0.11 0.38 4.96 -26.71 -0.13 0.25 16 24 H 0.06 -0.16 6.56 -51.93 -0.34 -0.50 16 25 H 0.05 -0.11 8.14 -51.93 -0.42 -0.53 16 26 H 0.05 -0.11 8.14 -51.93 -0.42 -0.54 16 27 H 0.06 -0.15 8.14 -51.93 -0.42 -0.58 16 28 H 0.06 -0.14 8.14 -51.93 -0.42 -0.56 16 29 H 0.07 -0.17 8.14 -51.93 -0.42 -0.60 16 30 H 0.07 -0.19 8.14 -51.93 -0.42 -0.61 16 31 H 0.07 -0.16 8.14 -51.93 -0.42 -0.58 16 32 H 0.07 -0.22 8.14 -51.93 -0.42 -0.64 16 33 H 0.42 -1.41 8.84 -34.47 -0.30 -1.72 16 34 H 0.14 -0.29 7.61 -52.48 -0.40 -0.69 16 35 H 0.14 -0.46 4.88 -52.48 -0.26 -0.72 16 36 H 0.12 -0.11 7.96 -51.93 -0.41 -0.52 16 37 H 0.38 -1.91 8.70 45.56 0.40 -1.52 16 38 H -0.25 -0.32 7.11 56.52 0.40 0.08 16 39 H -0.26 -0.09 7.11 56.52 0.40 0.31 16 40 H 0.14 -0.15 8.06 -52.48 -0.42 -0.58 16 41 H 0.14 -0.14 7.62 -52.49 -0.40 -0.54 16 42 H 0.07 -0.22 8.14 -51.93 -0.42 -0.64 16 43 H 0.07 -0.21 6.18 -51.93 -0.32 -0.53 16 44 H 0.07 -0.23 8.14 -51.93 -0.42 -0.65 16 45 H 0.07 -0.25 6.57 -51.93 -0.34 -0.59 16 LS Contribution 362.77 15.07 5.47 5.47 Total: 0.00 -8.68 362.77 -12.51 -21.18 By element: Atomic # 1 Polarization: -7.57 SS G_CDS: -7.04 Total: -14.61 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: -2.84 Total: -0.49 kcal Atomic # 7 Polarization: 1.95 SS G_CDS: -0.03 Total: 1.92 kcal Atomic # 8 Polarization: -7.20 SS G_CDS: -2.39 Total: -9.59 kcal Atomic # 14 Polarization: -1.43 SS G_CDS: -5.06 Total: -6.49 kcal Atomic # 16 Polarization: 3.22 SS G_CDS: -0.61 Total: 2.61 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -8.68 -12.51 -21.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10466082_13421422.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.181 kcal (2) G-P(sol) polarization free energy of solvation -8.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds