Wall clock time and date at job start Mon Mar 8 2021 09:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46917 * 2 1 4 4 H 1.09001 * 109.47053 * 55.00058 * 3 2 1 5 5 C 1.52994 * 109.46930 * 175.00327 * 3 2 1 6 6 C 1.53007 * 109.46930 * 180.02562 * 5 3 2 7 7 C 1.52996 * 109.46743 * 299.99580 * 6 5 3 8 8 H 1.09001 * 109.47470 * 299.99896 * 7 6 5 9 9 N 1.46501 * 109.47178 * 180.02562 * 7 6 5 10 10 S 1.65599 * 120.00418 * 144.99978 * 9 7 6 11 11 O 1.42100 * 106.40241 * 311.46108 * 10 9 7 12 12 O 1.42096 * 106.40379 * 178.53729 * 10 9 7 13 13 C 1.76199 * 107.21658 * 65.00023 * 10 9 7 14 14 C 1.38238 * 120.00251 * 269.72679 * 13 10 9 15 15 C 1.38228 * 120.00121 * 179.76592 * 14 13 10 16 16 C 1.38234 * 120.00032 * 0.48826 * 15 14 13 17 17 C 1.50706 * 120.00191 * 179.77047 * 16 15 14 18 18 O 1.42893 * 109.47299 * 120.01887 * 17 16 15 19 19 Si 1.86306 * 109.46850 * 0.02562 * 17 16 15 20 20 C 1.38230 * 119.99845 * 359.78460 * 16 15 14 21 21 C 1.38234 * 120.00019 * 90.00010 * 13 10 9 22 22 C 1.53001 * 109.47228 * 60.00041 * 7 6 5 23 23 C 1.52996 * 109.46743 * 294.99907 * 3 2 1 24 24 H 1.08991 * 109.47298 * 60.00386 * 1 2 3 25 25 H 1.09004 * 109.46810 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47162 * 300.00028 * 1 2 3 27 27 H 1.09003 * 109.47162 * 239.99972 * 2 1 3 28 28 H 1.08999 * 109.47594 * 119.99486 * 2 1 3 29 29 H 1.09000 * 109.47961 * 59.99793 * 5 3 2 30 30 H 1.08998 * 109.47219 * 299.99176 * 5 3 2 31 31 H 1.08999 * 109.47294 * 180.02562 * 6 5 3 32 32 H 1.09001 * 109.47053 * 59.99732 * 6 5 3 33 33 H 0.97001 * 119.99713 * 325.00184 * 9 7 6 34 34 H 1.08004 * 119.99572 * 0.02562 * 14 13 10 35 35 H 1.08004 * 120.00400 * 180.25458 * 15 14 13 36 36 H 1.09000 * 109.47006 * 240.02157 * 17 16 15 37 37 H 0.96701 * 114.00349 * 300.00249 * 18 17 16 38 38 H 1.48501 * 109.99711 * 180.02562 * 19 17 16 39 39 H 1.48494 * 109.99908 * 301.32195 * 19 17 16 40 40 H 1.08005 * 119.99901 * 179.97438 * 20 16 15 41 41 H 1.07999 * 120.00005 * 0.02562 * 21 13 10 42 42 H 1.09004 * 109.46770 * 60.00306 * 22 7 6 43 43 H 1.09005 * 109.47047 * 179.97438 * 22 7 6 44 44 H 1.09001 * 109.47470 * 299.99896 * 23 3 2 45 45 H 1.09003 * 109.47583 * 60.00091 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5647 1.4444 0.1256 6 6 4.0747 2.8870 0.1263 7 6 3.6698 3.5715 -1.1808 8 1 4.1045 3.0329 -2.0228 9 7 4.1586 4.9526 -1.1805 10 16 4.6693 5.6505 -2.5927 11 8 5.5545 4.7211 -3.2024 12 8 5.0430 6.9829 -2.2697 13 6 3.2666 5.7703 -3.6523 14 6 2.9646 4.7365 -4.5188 15 6 1.8614 4.8284 -5.3467 16 6 1.0659 5.9585 -5.3152 17 6 -0.1339 6.0610 -6.2214 18 8 -1.3153 6.2127 -5.4322 19 14 -0.2689 4.5136 -7.2502 20 6 1.3712 6.9947 -4.4528 21 6 2.4714 6.9006 -3.6212 22 6 2.1450 3.5696 -1.3065 23 6 1.6352 2.1265 -1.3074 24 1 -0.3633 0.5137 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 3.9995 0.9054 -0.7161 30 1 3.8532 0.9572 1.0570 31 1 5.1610 2.8884 0.2153 32 1 3.6400 3.4256 0.9683 33 1 4.1830 5.4582 -0.3531 34 1 3.5882 3.8551 -4.5460 35 1 1.6230 4.0189 -6.0207 36 1 -0.0213 6.9245 -6.8770 37 1 -1.4790 5.4790 -4.8240 38 1 -1.4479 4.6024 -8.1487 39 1 0.9671 4.3272 -8.0518 40 1 0.7499 7.8779 -4.4286 41 1 2.7101 7.7104 -2.9477 42 1 1.7104 4.1083 -0.4645 43 1 1.8566 4.0577 -2.2375 44 1 2.0698 1.5875 -2.1492 45 1 0.5488 2.1252 -1.3970 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10466082_13421422.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:03:23 Heat of formation + Delta-G solvation = -99.010719 kcal Electronic energy + Delta-G solvation = -26957.052171 eV Core-core repulsion = 23259.961130 eV Total energy + Delta-G solvation = -3697.091041 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 326.138 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.72694 -40.07419 -38.43250 -37.71132 -37.06645 -36.35265 -33.04294 -32.96177 -32.22134 -31.60172 -28.74368 -27.23685 -24.48135 -24.07162 -23.44785 -22.96535 -21.69106 -20.97651 -20.41660 -19.24328 -18.59841 -18.18088 -17.60072 -16.85419 -16.49648 -16.14925 -15.84765 -15.83810 -15.60644 -15.39881 -15.00616 -14.81506 -14.50860 -14.40643 -14.33664 -14.07710 -13.98635 -13.85900 -13.38035 -13.29756 -13.26764 -12.97082 -12.77846 -12.64485 -12.43514 -12.30904 -12.28215 -12.00635 -11.95877 -11.80615 -11.57282 -11.29013 -11.14026 -10.99290 -10.67607 -10.36553 -10.26137 -10.13606 -5.05940 -0.75746 -0.38817 0.18621 1.22196 1.58993 1.87782 1.92907 2.32479 2.68640 3.18896 3.40046 3.49516 3.70697 3.75651 3.78722 3.83246 3.90005 4.13844 4.18703 4.20203 4.30615 4.36293 4.37520 4.43705 4.51350 4.58581 4.59500 4.65785 4.73951 4.83372 4.83587 4.86376 4.94180 4.97562 4.99125 5.14898 5.22232 5.24361 5.25427 5.31209 5.32000 5.36706 5.40350 5.48309 5.62610 5.69072 5.70429 6.04556 6.69375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.120 4.120 3 C -0.087 4.087 4 H 0.069 0.931 5 C -0.114 4.114 6 C -0.121 4.121 7 C 0.144 3.856 8 H 0.091 0.909 9 N -1.101 6.101 10 S 2.706 3.294 11 O -0.985 6.985 12 O -0.991 6.991 13 C -0.675 4.675 14 C -0.020 4.020 15 C -0.138 4.138 16 C -0.062 4.062 17 C -0.081 4.081 18 O -0.549 6.549 19 Si 0.778 3.222 20 C -0.120 4.120 21 C -0.024 4.024 22 C -0.138 4.138 23 C -0.113 4.113 24 H 0.063 0.937 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.428 0.572 34 H 0.156 0.844 35 H 0.157 0.843 36 H 0.113 0.887 37 H 0.397 0.603 38 H -0.298 1.298 39 H -0.284 1.284 40 H 0.142 0.858 41 H 0.146 0.854 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.770 -5.018 2.819 7.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C -0.106 4.106 4 H 0.088 0.912 5 C -0.152 4.152 6 C -0.160 4.160 7 C 0.037 3.963 8 H 0.109 0.891 9 N -0.863 5.863 10 S 2.798 3.202 11 O -0.975 6.975 12 O -0.981 6.981 13 C -0.763 4.763 14 C -0.039 4.039 15 C -0.156 4.156 16 C -0.063 4.063 17 C -0.191 4.191 18 O -0.357 6.357 19 Si 0.684 3.316 20 C -0.139 4.139 21 C -0.044 4.044 22 C -0.177 4.177 23 C -0.151 4.151 24 H 0.082 0.918 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.265 0.735 34 H 0.174 0.826 35 H 0.174 0.826 36 H 0.131 0.869 37 H 0.248 0.752 38 H -0.226 1.226 39 H -0.211 1.211 40 H 0.159 0.841 41 H 0.164 0.836 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.945 -4.621 1.342 6.223 hybrid contribution -0.338 1.041 0.140 1.104 sum -4.284 -3.580 1.483 5.776 Atomic orbital electron populations 1.21830 0.95831 1.01522 1.02065 1.21560 0.95950 0.96311 1.01938 1.21206 0.95043 0.95909 0.98403 0.91241 1.21583 0.95466 0.95509 1.02630 1.21790 1.01443 0.96354 0.96461 1.21080 0.94780 0.79764 1.00651 0.89108 1.55354 1.82926 1.23191 1.24818 1.01210 0.73750 0.72093 0.73153 1.93566 1.62092 1.64556 1.77238 1.93564 1.82420 1.38061 1.84104 1.30771 1.23143 1.03679 1.18754 1.21112 0.95050 0.96754 0.91004 1.21364 0.95625 0.98205 1.00398 1.20827 0.95968 0.93924 0.95559 1.25315 0.83579 1.12354 0.97817 1.86503 1.40862 1.50728 1.57656 0.93743 0.76859 0.80962 0.80057 1.21292 0.97134 0.99542 0.95957 1.21098 0.91910 0.95109 0.96249 1.22132 0.94104 0.98199 1.03300 1.21624 1.01609 0.94235 0.97590 0.91827 0.93187 0.93087 0.91840 0.92446 0.91517 0.91324 0.91403 0.90436 0.73537 0.82640 0.82597 0.86917 0.75243 1.22594 1.21129 0.84056 0.83587 0.90811 0.90989 0.91148 0.90502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.81 9.67 71.98 0.70 1.50 16 2 C -0.12 0.64 5.40 30.60 0.17 0.81 16 3 C -0.09 0.55 2.19 -10.79 -0.02 0.53 16 4 H 0.07 -0.39 8.14 -2.39 -0.02 -0.41 16 5 C -0.11 0.64 5.20 30.59 0.16 0.80 16 6 C -0.12 0.64 5.45 30.60 0.17 0.81 16 7 C 0.14 -0.67 2.79 44.99 0.13 -0.55 16 8 H 0.09 -0.37 7.50 -2.39 -0.02 -0.39 16 9 N -1.10 3.52 5.47 -169.39 -0.93 2.60 16 10 S 2.71 8.66 5.72 -56.49 -0.32 8.34 16 11 O -0.98 -8.75 16.61 -128.00 -2.13 -10.87 16 12 O -0.99 -9.54 17.28 -128.00 -2.21 -11.76 16 13 C -0.67 -0.31 5.06 22.27 0.11 -0.20 16 14 C -0.02 0.04 8.60 22.27 0.19 0.23 16 15 C -0.14 0.53 8.67 22.27 0.19 0.72 16 16 C -0.06 0.16 5.39 -19.87 -0.11 0.05 16 17 C -0.08 0.28 2.82 71.24 0.20 0.48 16 18 O -0.55 1.71 12.77 -148.98 -1.90 -0.19 16 19 Si 0.78 -3.69 29.79 68.60 2.04 -1.64 16 20 C -0.12 0.12 9.61 22.27 0.21 0.33 16 21 C -0.02 0.00 9.52 22.27 0.21 0.21 16 22 C -0.14 0.95 5.53 30.61 0.17 1.12 16 23 C -0.11 0.85 4.96 30.61 0.15 1.00 16 24 H 0.06 -0.40 6.56 -2.39 -0.02 -0.42 16 25 H 0.05 -0.21 8.14 -2.39 -0.02 -0.23 16 26 H 0.05 -0.23 8.14 -2.39 -0.02 -0.25 16 27 H 0.06 -0.34 8.14 -2.39 -0.02 -0.35 16 28 H 0.06 -0.25 8.14 -2.39 -0.02 -0.27 16 29 H 0.07 -0.35 8.14 -2.39 -0.02 -0.37 16 30 H 0.07 -0.37 8.14 -2.39 -0.02 -0.39 16 31 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 32 H 0.08 -0.51 8.14 -2.39 -0.02 -0.53 16 33 H 0.43 -2.75 8.84 -96.74 -0.85 -3.60 16 34 H 0.16 -0.71 7.61 -2.91 -0.02 -0.73 16 35 H 0.16 -1.32 4.88 -2.91 -0.01 -1.34 16 36 H 0.11 -0.23 7.96 -2.39 -0.02 -0.25 16 37 H 0.40 -4.54 8.70 -74.06 -0.64 -5.19 16 38 H -0.30 -0.95 7.11 99.48 0.71 -0.24 16 39 H -0.28 -0.06 7.11 99.48 0.71 0.65 16 40 H 0.14 -0.33 8.06 -2.91 -0.02 -0.36 16 41 H 0.15 -0.18 7.62 -2.91 -0.02 -0.21 16 42 H 0.07 -0.51 8.14 -2.39 -0.02 -0.53 16 43 H 0.07 -0.51 6.18 -2.38 -0.01 -0.53 16 44 H 0.07 -0.56 8.14 -2.39 -0.02 -0.58 16 45 H 0.08 -0.64 6.57 -2.39 -0.02 -0.66 16 Total: 0.00 -19.85 362.77 -3.28 -23.13 By element: Atomic # 1 Polarization: -17.00 SS G_CDS: -0.46 Total: -17.46 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: 2.63 Total: 7.86 kcal Atomic # 7 Polarization: 3.52 SS G_CDS: -0.93 Total: 2.60 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -6.24 Total: -22.82 kcal Atomic # 14 Polarization: -3.69 SS G_CDS: 2.04 Total: -1.64 kcal Atomic # 16 Polarization: 8.66 SS G_CDS: -0.32 Total: 8.34 kcal Total: -19.85 -3.28 -23.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10466082_13421422.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.877 kcal (2) G-P(sol) polarization free energy of solvation -19.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds