Wall clock time and date at job start Mon Mar 8 2021 09:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47229 * 2 1 4 4 H 1.09000 * 109.47305 * 305.00050 * 3 2 1 5 5 C 1.53006 * 109.47265 * 64.99748 * 3 2 1 6 6 C 1.52996 * 109.47476 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.47040 * 299.99911 * 6 5 3 8 8 H 1.09008 * 109.47016 * 300.00095 * 7 6 5 9 9 N 1.46502 * 109.47216 * 180.02562 * 7 6 5 10 10 S 1.65600 * 119.99882 * 144.39124 * 9 7 6 11 11 O 1.42099 * 106.40451 * 47.84742 * 10 9 7 12 12 O 1.42103 * 106.39967 * 180.76479 * 10 9 7 13 13 C 1.76198 * 107.21752 * 294.30253 * 10 9 7 14 14 C 1.33396 * 125.19813 * 174.49454 * 13 10 9 15 15 C 1.50693 * 122.54190 * 0.02562 * 14 13 10 16 16 O 1.42901 * 109.47538 * 74.99992 * 15 14 13 17 17 Si 1.86304 * 109.47107 * 195.00219 * 15 14 13 18 18 C 1.38424 * 114.91666 * 179.85923 * 14 13 10 19 19 C 1.33395 * 114.92012 * 0.42856 * 18 14 13 20 20 S 1.75879 * 109.59468 * 359.77376 * 19 18 14 21 21 C 1.52995 * 109.47183 * 59.99885 * 7 6 5 22 22 C 1.53000 * 109.47409 * 184.99360 * 3 2 1 23 23 H 1.09007 * 109.47125 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47750 * 300.00085 * 1 2 3 25 25 H 1.09001 * 109.46939 * 60.00408 * 1 2 3 26 26 H 1.08995 * 109.47750 * 239.99915 * 2 1 3 27 27 H 1.09004 * 109.47424 * 119.99738 * 2 1 3 28 28 H 1.08996 * 109.47052 * 59.99563 * 5 3 2 29 29 H 1.09003 * 109.46684 * 300.00214 * 5 3 2 30 30 H 1.08999 * 109.47181 * 180.02562 * 6 5 3 31 31 H 1.08996 * 109.46986 * 60.00018 * 6 5 3 32 32 H 0.96999 * 119.99755 * 324.39417 * 9 7 6 33 33 H 1.09002 * 109.46840 * 314.99780 * 15 14 13 34 34 H 0.96695 * 113.99971 * 59.99626 * 16 15 14 35 35 H 1.48502 * 109.99907 * 180.02562 * 17 15 14 36 36 H 1.48496 * 109.99566 * 301.31525 * 17 15 14 37 37 H 1.08000 * 122.54259 * 180.19659 * 18 14 13 38 38 H 1.08000 * 125.19983 * 179.78323 * 19 18 14 39 39 H 1.09004 * 109.47259 * 59.99774 * 21 7 6 40 40 H 1.09002 * 109.47407 * 179.97438 * 21 7 6 41 41 H 1.08999 * 109.46714 * 60.00260 * 22 3 2 42 42 H 1.08996 * 109.47642 * 300.00133 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1266 1.3074 6 6 2.1446 3.5692 1.3071 7 6 3.6694 3.5716 1.1812 8 1 4.1044 3.0328 2.0231 9 7 4.1573 4.9530 1.1816 10 16 5.5970 5.3224 1.9118 11 8 6.5384 4.3626 1.4514 12 8 5.7771 6.7235 1.7578 13 6 5.3955 5.0334 3.6382 14 6 6.3654 5.1171 4.5502 15 6 7.7840 5.4795 4.1938 16 8 7.8645 6.8807 3.9246 17 14 8.9096 5.0548 5.6164 18 6 5.9692 4.8492 5.8491 19 6 4.6795 4.5392 5.9908 20 16 3.8865 4.5832 4.4216 21 6 4.0743 2.8876 -0.1260 22 6 3.5648 1.4443 -0.1256 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 2.0697 1.5875 2.1492 29 1 0.5488 2.1252 1.3968 30 1 1.8566 4.0564 2.2387 31 1 1.7097 4.1080 0.4654 32 1 3.6370 5.6512 0.7542 33 1 8.0903 4.9214 3.3091 34 1 7.6057 7.4398 4.6699 35 1 10.3116 5.4081 5.2777 36 1 8.4830 5.7852 6.8370 37 1 6.6532 4.8845 6.6842 38 1 4.1963 4.2983 6.9261 39 1 3.6393 3.4263 -0.9679 40 1 5.1606 2.8896 -0.2160 41 1 3.8532 0.9570 -1.0569 42 1 3.9994 0.9054 0.7162 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_10466082_13652106.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:03:29 Heat of formation + Delta-G solvation = -86.360062 kcal Electronic energy + Delta-G solvation = -25620.481780 eV Core-core repulsion = 22013.091559 eV Total energy + Delta-G solvation = -3607.390221 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 332.095 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -40.29581 -40.09417 -38.06303 -37.20597 -36.75445 -36.51750 -33.11864 -31.85623 -31.49629 -28.90843 -28.04689 -24.65695 -24.40897 -23.60502 -21.94695 -21.67044 -20.86348 -19.89661 -19.67112 -18.59698 -18.01249 -17.54001 -16.77993 -16.24577 -16.19871 -15.98984 -15.78029 -15.56924 -15.33230 -15.22703 -14.69062 -14.44816 -14.24991 -14.09652 -13.99374 -13.64220 -13.49820 -13.16280 -13.04869 -12.93065 -12.91368 -12.66790 -12.58661 -12.50330 -12.27717 -12.20708 -12.14514 -11.89883 -11.62710 -11.47808 -11.32903 -11.09117 -10.74540 -10.53522 -10.45890 -9.72959 -5.04279 -0.70432 -0.64646 0.17846 0.54707 1.13461 1.17530 1.49774 1.88616 1.93990 2.66973 3.24436 3.40631 3.51075 3.58558 3.63388 3.73795 3.88491 3.93618 4.01396 4.05302 4.14857 4.24485 4.31181 4.33274 4.41923 4.47438 4.55772 4.60115 4.61141 4.68786 4.78567 4.80883 4.92736 4.97970 5.04790 5.10497 5.11009 5.14283 5.15652 5.27186 5.30633 5.43245 5.51250 5.84621 6.31828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.121 4.121 3 C -0.091 4.091 4 H 0.072 0.928 5 C -0.115 4.115 6 C -0.126 4.126 7 C 0.149 3.851 8 H 0.085 0.915 9 N -1.116 6.116 10 S 2.715 3.285 11 O -0.943 6.943 12 O -0.935 6.935 13 C -0.767 4.767 14 C 0.007 3.993 15 C -0.108 4.108 16 O -0.511 6.511 17 Si 0.711 3.289 18 C -0.163 4.163 19 C -0.164 4.164 20 S 0.207 5.793 21 C -0.138 4.138 22 C -0.114 4.114 23 H 0.053 0.947 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.422 0.578 33 H 0.131 0.869 34 H 0.379 0.621 35 H -0.248 1.248 36 H -0.253 1.253 37 H 0.157 0.843 38 H 0.179 0.821 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.665 -4.303 3.434 7.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.158 4.158 3 C -0.110 4.110 4 H 0.091 0.909 5 C -0.153 4.153 6 C -0.166 4.166 7 C 0.043 3.957 8 H 0.103 0.897 9 N -0.876 5.876 10 S 2.799 3.201 11 O -0.933 6.933 12 O -0.924 6.924 13 C -0.967 4.967 14 C -0.010 4.010 15 C -0.219 4.219 16 O -0.318 6.318 17 Si 0.610 3.390 18 C -0.193 4.193 19 C -0.301 4.301 20 S 0.473 5.527 21 C -0.177 4.177 22 C -0.152 4.152 23 H 0.072 0.928 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.257 0.743 33 H 0.149 0.851 34 H 0.227 0.773 35 H -0.172 1.172 36 H -0.178 1.178 37 H 0.174 0.826 38 H 0.196 0.804 39 H 0.090 0.910 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.562 -4.322 2.678 6.831 hybrid contribution 0.196 1.475 1.060 1.827 sum -4.366 -2.846 3.737 6.414 Atomic orbital electron populations 1.21832 0.95851 1.01695 1.01884 1.21570 0.95935 0.96138 1.02180 1.21262 0.95518 0.96132 0.98069 0.90917 1.21633 1.01287 0.94408 0.97946 1.21888 0.93565 0.98141 1.02957 1.20961 0.95670 0.79946 0.99143 0.89707 1.55741 1.43627 1.16486 1.71791 1.01618 0.72519 0.73867 0.72115 1.93614 1.58202 1.63259 1.78183 1.93654 1.83741 1.30107 1.84947 1.35778 1.04865 1.25840 1.30167 1.18972 0.95980 0.93974 0.92116 1.25398 0.96436 0.86129 1.13959 1.86764 1.89417 1.13857 1.41738 0.94598 0.78265 0.91296 0.74806 1.20339 0.96659 1.05165 0.97172 1.26147 0.98079 1.03477 1.02399 1.84094 1.06813 1.64137 0.97617 1.22083 1.02512 0.96023 0.97113 1.21592 0.95012 0.95946 1.02670 0.92813 0.92501 0.92780 0.91886 0.91906 0.91504 0.90954 0.91132 0.90757 0.74296 0.85087 0.77283 1.17199 1.17809 0.82623 0.80372 0.91038 0.90183 0.91238 0.91528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.27 9.67 37.16 0.36 0.63 16 2 C -0.12 0.21 5.40 -26.73 -0.14 0.07 16 3 C -0.09 0.18 2.19 -90.62 -0.20 -0.02 16 4 H 0.07 -0.12 8.14 -51.93 -0.42 -0.55 16 5 C -0.11 0.30 4.96 -26.73 -0.13 0.16 16 6 C -0.13 0.33 5.46 -26.73 -0.15 0.18 16 7 C 0.15 -0.16 2.20 -67.93 -0.15 -0.31 16 8 H 0.08 -0.11 7.34 -51.92 -0.38 -0.49 16 9 N -1.12 0.31 5.28 -4.89 -0.03 0.29 16 10 S 2.71 8.69 5.06 -107.50 -0.54 8.14 16 11 O -0.94 -4.99 16.42 -57.17 -0.94 -5.93 16 12 O -0.93 -5.99 17.89 -57.18 -1.02 -7.01 16 13 C -0.77 -1.33 6.37 29.04 0.18 -1.15 16 14 C 0.01 0.01 5.13 -106.25 -0.55 -0.54 16 15 C -0.11 -0.20 2.33 36.00 0.08 -0.11 16 16 O -0.51 -1.70 12.75 -35.23 -0.45 -2.15 16 17 Si 0.71 -0.49 30.47 -169.99 -5.18 -5.67 16 18 C -0.16 0.13 8.74 -41.21 -0.36 -0.23 16 19 C -0.16 0.30 11.23 29.04 0.33 0.62 16 20 S 0.21 -0.22 22.12 -107.50 -2.38 -2.60 16 21 C -0.14 0.07 5.53 -26.71 -0.15 -0.08 16 22 C -0.11 0.15 5.21 -26.70 -0.14 0.01 16 23 H 0.05 -0.08 8.14 -51.93 -0.42 -0.50 16 24 H 0.06 -0.11 6.56 -51.93 -0.34 -0.45 16 25 H 0.05 -0.08 8.14 -51.93 -0.42 -0.51 16 26 H 0.06 -0.09 8.14 -51.93 -0.42 -0.52 16 27 H 0.06 -0.11 8.14 -51.93 -0.42 -0.53 16 28 H 0.07 -0.18 8.14 -51.93 -0.42 -0.60 16 29 H 0.07 -0.20 6.57 -51.93 -0.34 -0.54 16 30 H 0.07 -0.22 8.14 -51.93 -0.42 -0.65 16 31 H 0.07 -0.21 8.14 -51.93 -0.42 -0.64 16 32 H 0.42 -0.92 8.84 -34.47 -0.30 -1.22 16 33 H 0.13 0.31 6.91 -51.93 -0.36 -0.05 16 34 H 0.38 -0.13 8.70 45.56 0.40 0.26 16 35 H -0.25 -0.57 7.11 56.52 0.40 -0.17 16 36 H -0.25 0.01 6.80 56.52 0.38 0.40 16 37 H 0.16 -0.42 5.54 -52.49 -0.29 -0.71 16 38 H 0.18 -0.83 8.06 -52.49 -0.42 -1.25 16 39 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 40 H 0.08 0.09 7.71 -51.93 -0.40 -0.31 16 41 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 42 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 LS Contribution 354.08 15.07 5.34 5.34 Total: 0.00 -8.37 354.08 -12.52 -20.89 By element: Atomic # 1 Polarization: -4.24 SS G_CDS: -6.31 Total: -10.55 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -1.01 Total: -0.75 kcal Atomic # 7 Polarization: 0.31 SS G_CDS: -0.03 Total: 0.29 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: -2.41 Total: -15.09 kcal Atomic # 14 Polarization: -0.49 SS G_CDS: -5.18 Total: -5.67 kcal Atomic # 16 Polarization: 8.47 SS G_CDS: -2.92 Total: 5.54 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -8.37 -12.52 -20.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10466082_13652106.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.470 kcal (2) G-P(sol) polarization free energy of solvation -8.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds