Wall clock time and date at job start Mon Mar 8 2021 09:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47229 * 2 1 4 4 H 1.09000 * 109.47305 * 305.00050 * 3 2 1 5 5 C 1.53006 * 109.47265 * 64.99748 * 3 2 1 6 6 C 1.52996 * 109.47476 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.47040 * 299.99911 * 6 5 3 8 8 H 1.09008 * 109.47016 * 300.00095 * 7 6 5 9 9 N 1.46502 * 109.47216 * 180.02562 * 7 6 5 10 10 S 1.65600 * 119.99882 * 144.39124 * 9 7 6 11 11 O 1.42099 * 106.40451 * 47.84742 * 10 9 7 12 12 O 1.42103 * 106.39967 * 180.76479 * 10 9 7 13 13 C 1.76198 * 107.21752 * 294.30253 * 10 9 7 14 14 C 1.33396 * 125.19813 * 174.49454 * 13 10 9 15 15 C 1.50693 * 122.54190 * 0.02562 * 14 13 10 16 16 O 1.42901 * 109.47538 * 74.99992 * 15 14 13 17 17 Si 1.86304 * 109.47107 * 195.00219 * 15 14 13 18 18 C 1.38424 * 114.91666 * 179.85923 * 14 13 10 19 19 C 1.33395 * 114.92012 * 0.42856 * 18 14 13 20 20 S 1.75879 * 109.59468 * 359.77376 * 19 18 14 21 21 C 1.52995 * 109.47183 * 59.99885 * 7 6 5 22 22 C 1.53000 * 109.47409 * 184.99360 * 3 2 1 23 23 H 1.09007 * 109.47125 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47750 * 300.00085 * 1 2 3 25 25 H 1.09001 * 109.46939 * 60.00408 * 1 2 3 26 26 H 1.08995 * 109.47750 * 239.99915 * 2 1 3 27 27 H 1.09004 * 109.47424 * 119.99738 * 2 1 3 28 28 H 1.08996 * 109.47052 * 59.99563 * 5 3 2 29 29 H 1.09003 * 109.46684 * 300.00214 * 5 3 2 30 30 H 1.08999 * 109.47181 * 180.02562 * 6 5 3 31 31 H 1.08996 * 109.46986 * 60.00018 * 6 5 3 32 32 H 0.96999 * 119.99755 * 324.39417 * 9 7 6 33 33 H 1.09002 * 109.46840 * 314.99780 * 15 14 13 34 34 H 0.96695 * 113.99971 * 59.99626 * 16 15 14 35 35 H 1.48502 * 109.99907 * 180.02562 * 17 15 14 36 36 H 1.48496 * 109.99566 * 301.31525 * 17 15 14 37 37 H 1.08000 * 122.54259 * 180.19659 * 18 14 13 38 38 H 1.08000 * 125.19983 * 179.78323 * 19 18 14 39 39 H 1.09004 * 109.47259 * 59.99774 * 21 7 6 40 40 H 1.09002 * 109.47407 * 179.97438 * 21 7 6 41 41 H 1.08999 * 109.46714 * 60.00260 * 22 3 2 42 42 H 1.08996 * 109.47642 * 300.00133 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1266 1.3074 6 6 2.1446 3.5692 1.3071 7 6 3.6694 3.5716 1.1812 8 1 4.1044 3.0328 2.0231 9 7 4.1573 4.9530 1.1816 10 16 5.5970 5.3224 1.9118 11 8 6.5384 4.3626 1.4514 12 8 5.7771 6.7235 1.7578 13 6 5.3955 5.0334 3.6382 14 6 6.3654 5.1171 4.5502 15 6 7.7840 5.4795 4.1938 16 8 7.8645 6.8807 3.9246 17 14 8.9096 5.0548 5.6164 18 6 5.9692 4.8492 5.8491 19 6 4.6795 4.5392 5.9908 20 16 3.8865 4.5832 4.4216 21 6 4.0743 2.8876 -0.1260 22 6 3.5648 1.4443 -0.1256 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 2.0697 1.5875 2.1492 29 1 0.5488 2.1252 1.3968 30 1 1.8566 4.0564 2.2387 31 1 1.7097 4.1080 0.4654 32 1 3.6370 5.6512 0.7542 33 1 8.0903 4.9214 3.3091 34 1 7.6057 7.4398 4.6699 35 1 10.3116 5.4081 5.2777 36 1 8.4830 5.7852 6.8370 37 1 6.6532 4.8845 6.6842 38 1 4.1963 4.2983 6.9261 39 1 3.6393 3.4263 -0.9679 40 1 5.1606 2.8896 -0.2160 41 1 3.8532 0.9570 -1.0569 42 1 3.9994 0.9054 0.7162 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10466082_13652106.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:03:28 Heat of formation + Delta-G solvation = -87.097057 kcal Electronic energy + Delta-G solvation = -25620.513738 eV Core-core repulsion = 22013.091559 eV Total energy + Delta-G solvation = -3607.422180 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 332.095 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.21860 -40.08319 -38.39034 -37.31584 -37.08227 -36.47287 -33.06192 -31.73181 -31.45108 -28.82793 -28.11923 -24.54363 -24.37745 -23.48514 -21.93270 -21.65443 -20.76639 -19.99065 -19.70585 -18.74575 -18.08176 -17.60863 -16.86906 -16.35952 -16.29420 -15.97613 -15.72738 -15.52682 -15.31894 -15.10646 -14.58821 -14.42712 -14.22397 -14.06637 -13.88467 -13.69013 -13.56614 -13.39624 -13.29361 -13.06143 -12.85742 -12.80160 -12.54597 -12.44783 -12.36921 -12.12200 -12.03375 -11.76964 -11.62492 -11.33870 -11.21168 -11.01145 -10.82852 -10.49343 -10.42004 -9.64351 -4.99649 -0.84129 -0.68526 0.20081 0.65059 1.13283 1.23952 1.52185 1.83346 1.89516 2.47238 3.17930 3.41108 3.47247 3.61250 3.73845 3.78114 3.98578 4.05510 4.10515 4.16381 4.22627 4.30124 4.34810 4.44927 4.54383 4.59323 4.67069 4.69694 4.75907 4.81326 4.87570 4.93992 5.06772 5.09184 5.17620 5.20704 5.25008 5.26987 5.30223 5.35854 5.41801 5.58107 5.64990 5.91410 6.32964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.120 4.120 3 C -0.088 4.088 4 H 0.071 0.929 5 C -0.113 4.113 6 C -0.123 4.123 7 C 0.146 3.854 8 H 0.087 0.913 9 N -1.105 6.105 10 S 2.721 3.279 11 O -0.976 6.976 12 O -0.978 6.978 13 C -0.798 4.798 14 C 0.001 3.999 15 C -0.138 4.138 16 O -0.539 6.539 17 Si 0.804 3.196 18 C -0.175 4.175 19 C -0.150 4.150 20 S 0.236 5.764 21 C -0.140 4.140 22 C -0.112 4.112 23 H 0.050 0.950 24 H 0.062 0.938 25 H 0.051 0.949 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.430 0.570 33 H 0.113 0.887 34 H 0.391 0.609 35 H -0.295 1.295 36 H -0.249 1.249 37 H 0.178 0.822 38 H 0.214 0.786 39 H 0.075 0.925 40 H 0.058 0.942 41 H 0.066 0.934 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.392 -5.024 5.517 9.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.106 4.106 4 H 0.089 0.911 5 C -0.151 4.151 6 C -0.162 4.162 7 C 0.040 3.960 8 H 0.105 0.895 9 N -0.868 5.868 10 S 2.809 3.191 11 O -0.966 6.966 12 O -0.968 6.968 13 C -1.000 5.000 14 C -0.017 4.017 15 C -0.246 4.246 16 O -0.348 6.348 17 Si 0.704 3.296 18 C -0.204 4.204 19 C -0.287 4.287 20 S 0.502 5.498 21 C -0.180 4.180 22 C -0.151 4.151 23 H 0.069 0.931 24 H 0.081 0.919 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.268 0.732 33 H 0.130 0.870 34 H 0.241 0.759 35 H -0.223 1.223 36 H -0.174 1.174 37 H 0.195 0.805 38 H 0.231 0.769 39 H 0.093 0.907 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.328 -5.031 4.713 9.358 hybrid contribution 0.699 1.672 0.377 1.851 sum -5.629 -3.359 5.089 8.299 Atomic orbital electron populations 1.21830 0.95709 1.01605 1.02077 1.21554 0.96012 0.96145 1.02021 1.21219 0.94677 0.96160 0.98547 0.91065 1.21641 1.01782 0.94129 0.97582 1.21889 0.91907 0.98516 1.03852 1.21113 0.96941 0.79113 0.98844 0.89517 1.55459 1.42584 1.17265 1.71515 1.00895 0.72838 0.72570 0.72789 1.93566 1.60066 1.63602 1.79386 1.93591 1.84786 1.32346 1.86030 1.35466 1.07111 1.28264 1.29202 1.19132 0.95402 0.93902 0.93245 1.25879 0.98362 0.85302 1.15053 1.86715 1.89773 1.15027 1.43286 0.93569 0.73615 0.89769 0.72661 1.20486 0.97654 1.05740 0.96554 1.26642 0.97630 1.01246 1.03165 1.83925 1.04933 1.63136 0.97765 1.22088 1.01196 0.96923 0.97762 1.21579 0.95723 0.95172 1.02588 0.93065 0.91893 0.92986 0.92393 0.91769 0.91064 0.90113 0.89983 0.90177 0.73209 0.86950 0.75887 1.22291 1.17360 0.80522 0.76928 0.90664 0.92361 0.91502 0.91504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.63 9.67 71.98 0.70 1.32 16 2 C -0.12 0.46 5.40 30.59 0.17 0.63 16 3 C -0.09 0.37 2.19 -10.79 -0.02 0.35 16 4 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 5 C -0.11 0.71 4.96 30.59 0.15 0.86 16 6 C -0.12 0.73 5.46 30.59 0.17 0.90 16 7 C 0.15 -0.25 2.20 44.99 0.10 -0.15 16 8 H 0.09 -0.18 7.34 -2.38 -0.02 -0.20 16 9 N -1.10 -0.74 5.28 -169.39 -0.89 -1.63 16 10 S 2.72 23.67 5.06 -56.49 -0.29 23.38 16 11 O -0.98 -13.43 16.42 -128.00 -2.10 -15.53 16 12 O -0.98 -15.39 17.89 -127.99 -2.29 -17.68 16 13 C -0.80 -3.40 6.37 66.72 0.43 -2.98 16 14 C 0.00 0.00 5.13 -20.92 -0.11 -0.10 16 15 C -0.14 -0.73 2.33 71.23 0.17 -0.57 16 16 O -0.54 -4.80 12.75 -148.98 -1.90 -6.70 16 17 Si 0.80 -1.07 30.47 68.60 2.09 1.02 16 18 C -0.18 0.57 8.74 21.22 0.19 0.76 16 19 C -0.15 0.93 11.23 66.72 0.75 1.68 16 20 S 0.24 -0.78 22.12 -56.49 -1.25 -2.03 16 21 C -0.14 -0.03 5.53 30.61 0.17 0.14 16 22 C -0.11 0.23 5.21 30.61 0.16 0.39 16 23 H 0.05 -0.17 8.14 -2.38 -0.02 -0.19 16 24 H 0.06 -0.33 6.56 -2.39 -0.02 -0.34 16 25 H 0.05 -0.18 8.14 -2.39 -0.02 -0.20 16 26 H 0.06 -0.16 8.14 -2.39 -0.02 -0.18 16 27 H 0.06 -0.25 8.14 -2.39 -0.02 -0.27 16 28 H 0.07 -0.48 8.14 -2.39 -0.02 -0.50 16 29 H 0.08 -0.59 6.57 -2.39 -0.02 -0.61 16 30 H 0.08 -0.65 8.14 -2.39 -0.02 -0.67 16 31 H 0.08 -0.54 8.14 -2.39 -0.02 -0.56 16 32 H 0.43 -1.41 8.84 -96.74 -0.86 -2.27 16 33 H 0.11 0.90 6.91 -2.39 -0.02 0.89 16 34 H 0.39 0.37 8.70 -74.06 -0.64 -0.28 16 35 H -0.30 -1.85 7.11 99.48 0.71 -1.15 16 36 H -0.25 0.51 6.80 99.48 0.68 1.19 16 37 H 0.18 -1.41 5.54 -2.91 -0.02 -1.43 16 38 H 0.21 -2.88 8.06 -2.91 -0.02 -2.90 16 39 H 0.07 -0.07 8.14 -2.38 -0.02 -0.09 16 40 H 0.06 0.27 7.71 -2.39 -0.02 0.26 16 41 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 42 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 Total: 0.00 -21.93 354.08 -4.08 -26.01 By element: Atomic # 1 Polarization: -9.62 SS G_CDS: -0.45 Total: -10.07 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: 3.00 Total: 3.23 kcal Atomic # 7 Polarization: -0.74 SS G_CDS: -0.89 Total: -1.63 kcal Atomic # 8 Polarization: -33.62 SS G_CDS: -6.29 Total: -39.91 kcal Atomic # 14 Polarization: -1.07 SS G_CDS: 2.09 Total: 1.02 kcal Atomic # 16 Polarization: 22.88 SS G_CDS: -1.54 Total: 21.35 kcal Total: -21.93 -4.08 -26.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10466082_13652106.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.085 kcal (2) G-P(sol) polarization free energy of solvation -21.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds