Wall clock time and date at job start Mon Mar 8 2021 09:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47211 * 2 1 4 4 H 1.09008 * 109.47028 * 305.00403 * 3 2 1 5 5 C 1.52999 * 109.47041 * 64.99813 * 3 2 1 6 6 C 1.52999 * 109.47071 * 180.02562 * 5 3 2 7 7 C 1.53003 * 109.47134 * 299.99840 * 6 5 3 8 8 H 1.09006 * 109.46857 * 300.00315 * 7 6 5 9 9 N 1.46493 * 109.47404 * 180.02562 * 7 6 5 10 10 S 1.65600 * 120.00353 * 97.40012 * 9 7 6 11 11 O 1.42097 * 106.40053 * 180.43302 * 10 9 7 12 12 O 1.42099 * 106.39910 * 313.35019 * 10 9 7 13 13 C 1.76196 * 107.21735 * 66.88947 * 10 9 7 14 14 C 1.33388 * 122.53887 * 165.59201 * 13 10 9 15 15 C 1.50705 * 125.20311 * 0.02617 * 14 13 10 16 16 O 1.42900 * 109.46946 * 39.63518 * 15 14 13 17 17 Si 1.86292 * 109.47245 * 159.63569 * 15 14 13 18 18 S 1.75887 * 109.59345 * 179.90772 * 14 13 10 19 19 C 1.75876 * 90.96885 * 0.30106 * 18 14 13 20 20 C 1.33382 * 109.59609 * 359.83149 * 19 18 14 21 21 C 1.53001 * 109.46876 * 59.99763 * 7 6 5 22 22 C 1.52997 * 109.47219 * 185.00222 * 3 2 1 23 23 H 1.09003 * 109.46646 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.46932 * 299.99625 * 1 2 3 25 25 H 1.09002 * 109.46955 * 60.00322 * 1 2 3 26 26 H 1.09003 * 109.47278 * 240.00336 * 2 1 3 27 27 H 1.09003 * 109.47419 * 119.99933 * 2 1 3 28 28 H 1.08992 * 109.47138 * 60.00343 * 5 3 2 29 29 H 1.09005 * 109.47089 * 300.00011 * 5 3 2 30 30 H 1.09005 * 109.47117 * 180.02562 * 6 5 3 31 31 H 1.08997 * 109.47768 * 59.99874 * 6 5 3 32 32 H 0.97004 * 119.99814 * 277.39888 * 9 7 6 33 33 H 1.08996 * 109.47083 * 279.63489 * 15 14 13 34 34 H 0.96698 * 113.99983 * 184.95835 * 16 15 14 35 35 H 1.48494 * 110.00307 * 178.68235 * 17 15 14 36 36 H 1.48505 * 110.00094 * 300.00149 * 17 15 14 37 37 H 1.08007 * 125.20027 * 179.86890 * 19 18 14 38 38 H 1.07999 * 122.54067 * 180.02562 * 20 19 18 39 39 H 1.09004 * 109.47233 * 179.97438 * 21 7 6 40 40 H 1.09006 * 109.46926 * 60.00595 * 21 7 6 41 41 H 1.08989 * 109.47347 * 60.00281 * 22 3 2 42 42 H 1.09001 * 109.47048 * 299.99391 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 2.1447 3.5692 1.3071 7 6 3.6695 3.5716 1.1811 8 1 4.1045 3.0327 2.0230 9 7 4.1575 4.9529 1.1815 10 16 4.7238 5.6307 2.5822 11 8 5.1066 6.9603 2.2584 12 8 3.7731 5.3196 3.5915 13 6 6.2041 4.7776 3.0131 14 6 7.0625 5.2440 3.9213 15 6 6.8999 6.5295 4.6909 16 8 5.5292 6.6931 5.0605 17 14 7.9543 6.4721 6.2256 18 16 8.4117 4.1276 4.0856 19 6 7.7179 3.0633 2.8694 20 6 6.5672 3.5756 2.4306 21 6 4.0743 2.8875 -0.1262 22 6 3.5648 1.4443 -0.1258 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.0698 1.5876 2.1491 29 1 0.5489 2.1252 1.3969 30 1 1.8567 4.0564 2.2387 31 1 1.7098 4.1081 0.4653 32 1 4.1488 5.4705 0.3611 33 1 7.2107 7.3679 4.0676 34 1 5.3365 7.5361 5.4932 35 1 7.8274 7.7466 6.9770 36 1 7.5405 5.3331 7.0839 37 1 8.1563 2.1363 2.5302 38 1 5.9643 3.0892 1.6781 39 1 5.1606 2.8895 -0.2162 40 1 3.6394 3.4263 -0.9680 41 1 3.8532 0.9571 -1.0571 42 1 3.9995 0.9054 0.7161 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_10466082_14772022.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:03:34 Heat of formation + Delta-G solvation = -85.082275 kcal Electronic energy + Delta-G solvation = -25801.187213 eV Core-core repulsion = 22193.852400 eV Total energy + Delta-G solvation = -3607.334812 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 332.095 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -40.30858 -39.51725 -37.92344 -37.73477 -36.54149 -36.39465 -33.08110 -31.98800 -31.76012 -28.87901 -27.50482 -24.59503 -24.42942 -23.56028 -21.82583 -21.64302 -21.01218 -20.01070 -18.98360 -18.57304 -18.06918 -17.51906 -17.43649 -16.42242 -16.08315 -15.80386 -15.67309 -15.26549 -15.10494 -15.01356 -14.57454 -14.41027 -14.30197 -14.10983 -13.95372 -13.72866 -13.36621 -13.10468 -13.01097 -12.85994 -12.79257 -12.70305 -12.59307 -12.40217 -12.35923 -12.15864 -12.13991 -11.70514 -11.64883 -11.45686 -11.28535 -11.08655 -10.97479 -10.42591 -10.04179 -9.71881 -5.22559 -0.51328 -0.44779 0.34136 0.65280 1.00307 1.19041 1.47661 1.81825 2.08588 2.88730 2.98595 3.42258 3.55159 3.58762 3.68182 3.84804 3.94459 3.99119 4.07069 4.11964 4.20270 4.25584 4.30577 4.35881 4.42841 4.49856 4.57726 4.60879 4.67564 4.72271 4.83008 4.84905 4.99257 5.00414 5.10115 5.11308 5.13298 5.16805 5.23059 5.27065 5.36703 5.46259 5.53043 5.96537 6.20741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.120 4.120 3 C -0.091 4.091 4 H 0.072 0.928 5 C -0.116 4.116 6 C -0.137 4.137 7 C 0.149 3.851 8 H 0.087 0.913 9 N -1.118 6.118 10 S 2.719 3.281 11 O -0.957 6.957 12 O -0.935 6.935 13 C -0.663 4.663 14 C -0.056 4.056 15 C -0.078 4.078 16 O -0.533 6.533 17 Si 0.677 3.323 18 S 0.166 5.834 19 C -0.210 4.210 20 C -0.093 4.093 21 C -0.129 4.129 22 C -0.114 4.114 23 H 0.053 0.947 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.419 0.581 33 H 0.111 0.889 34 H 0.398 0.602 35 H -0.234 1.234 36 H -0.236 1.236 37 H 0.177 0.823 38 H 0.153 0.847 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.588 -2.470 -2.504 5.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.158 4.158 3 C -0.110 4.110 4 H 0.091 0.909 5 C -0.154 4.154 6 C -0.177 4.177 7 C 0.042 3.958 8 H 0.105 0.895 9 N -0.878 5.878 10 S 2.804 3.196 11 O -0.947 6.947 12 O -0.925 6.925 13 C -0.761 4.761 14 C -0.177 4.177 15 C -0.189 4.189 16 O -0.344 6.344 17 Si 0.573 3.427 18 S 0.430 5.570 19 C -0.345 4.345 20 C -0.121 4.121 21 C -0.168 4.168 22 C -0.153 4.153 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.253 0.747 33 H 0.128 0.872 34 H 0.249 0.751 35 H -0.157 1.157 36 H -0.159 1.159 37 H 0.194 0.806 38 H 0.171 0.829 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.549 -2.522 -0.353 5.213 hybrid contribution -1.669 0.305 -1.346 2.166 sum 2.879 -2.217 -1.699 4.012 Atomic orbital electron populations 1.21833 0.95797 1.01692 1.01996 1.21570 0.96067 0.96113 1.02041 1.21258 0.95182 0.96169 0.98352 0.90909 1.21637 1.01401 0.94809 0.97516 1.22065 0.94342 0.97688 1.03565 1.20956 0.95247 0.80369 0.99250 0.89536 1.55796 1.79039 1.23937 1.29002 1.01460 0.73225 0.72631 0.72277 1.93558 1.83897 1.33444 1.83845 1.93598 1.58275 1.84315 1.56319 1.29863 1.24910 1.11085 1.10269 1.23687 0.98071 0.98600 0.97313 1.24670 0.90656 0.95564 1.07966 1.86499 1.22661 1.44287 1.80907 0.95392 0.86180 0.83702 0.77408 1.84161 1.21985 1.12556 1.38306 1.25893 1.00419 1.04777 1.03448 1.19849 0.97363 0.93748 1.01133 1.21937 1.01311 0.96462 0.97099 1.21598 0.95551 0.95582 1.02541 0.92816 0.92390 0.92764 0.91984 0.91935 0.91608 0.91045 0.90318 0.91133 0.74670 0.87173 0.75075 1.15681 1.15939 0.80605 0.82943 0.91073 0.90689 0.91208 0.91565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.15 9.67 37.16 0.36 0.51 16 2 C -0.12 0.16 5.40 -26.73 -0.14 0.01 16 3 C -0.09 0.14 2.19 -90.62 -0.20 -0.06 16 4 H 0.07 -0.10 8.14 -51.92 -0.42 -0.52 16 5 C -0.12 0.08 4.96 -26.73 -0.13 -0.05 16 6 C -0.14 -0.02 5.53 -26.73 -0.15 -0.17 16 7 C 0.15 -0.08 1.51 -67.93 -0.10 -0.18 16 8 H 0.09 -0.04 6.36 -51.93 -0.33 -0.37 16 9 N -1.12 -0.21 5.21 -4.89 -0.03 -0.23 16 10 S 2.72 10.15 4.12 -107.50 -0.44 9.71 16 11 O -0.96 -5.51 17.10 -61.91 -1.06 -6.57 16 12 O -0.94 -6.31 16.39 -64.94 -1.06 -7.37 16 13 C -0.66 -1.89 5.71 -41.21 -0.24 -2.13 16 14 C -0.06 -0.14 5.78 -36.00 -0.21 -0.35 16 15 C -0.08 -0.11 2.34 36.01 0.08 -0.03 16 16 O -0.53 -1.58 9.56 -59.59 -0.57 -2.15 16 17 Si 0.68 -0.32 31.25 -169.99 -5.31 -5.63 16 18 S 0.17 -0.01 20.85 -107.50 -2.24 -2.26 16 19 C -0.21 0.09 11.23 29.04 0.33 0.42 16 20 C -0.09 -0.06 9.04 -41.21 -0.37 -0.43 16 21 C -0.13 0.30 5.22 -26.71 -0.14 0.16 16 22 C -0.11 0.26 5.21 -26.71 -0.14 0.12 16 23 H 0.05 -0.05 8.14 -51.93 -0.42 -0.47 16 24 H 0.06 -0.05 6.56 -51.93 -0.34 -0.39 16 25 H 0.05 -0.05 8.14 -51.93 -0.42 -0.47 16 26 H 0.06 -0.09 8.14 -51.93 -0.42 -0.51 16 27 H 0.06 -0.07 8.14 -51.93 -0.42 -0.50 16 28 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 29 H 0.07 -0.05 6.57 -51.93 -0.34 -0.39 16 30 H 0.08 0.15 7.91 -51.93 -0.41 -0.26 16 31 H 0.07 -0.03 8.14 -51.93 -0.42 -0.46 16 32 H 0.42 -0.74 8.86 -34.47 -0.31 -1.05 16 33 H 0.11 -0.03 7.96 -51.93 -0.41 -0.44 16 34 H 0.40 -0.60 8.86 45.56 0.40 -0.20 16 35 H -0.23 -0.12 7.11 56.52 0.40 0.28 16 36 H -0.24 -0.57 7.11 56.52 0.40 -0.17 16 37 H 0.18 -0.57 8.06 -52.48 -0.42 -1.00 16 38 H 0.15 -0.25 4.45 -52.49 -0.23 -0.48 16 39 H 0.07 -0.23 7.21 -51.93 -0.37 -0.60 16 40 H 0.07 -0.20 8.14 -51.93 -0.42 -0.62 16 41 H 0.07 -0.18 8.14 -51.94 -0.42 -0.60 16 42 H 0.07 -0.16 8.14 -51.93 -0.42 -0.58 16 LS Contribution 346.70 15.07 5.22 5.22 Total: 0.00 -8.95 346.70 -12.74 -21.69 By element: Atomic # 1 Polarization: -4.05 SS G_CDS: -6.19 Total: -10.24 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -1.05 Total: -2.17 kcal Atomic # 7 Polarization: -0.21 SS G_CDS: -0.03 Total: -0.23 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -2.69 Total: -16.10 kcal Atomic # 14 Polarization: -0.32 SS G_CDS: -5.31 Total: -5.63 kcal Atomic # 16 Polarization: 10.14 SS G_CDS: -2.68 Total: 7.45 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -8.95 -12.74 -21.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10466082_14772022.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.397 kcal (2) G-P(sol) polarization free energy of solvation -8.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds