Wall clock time and date at job start Mon Mar 8 2021 09:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47211 * 2 1 4 4 H 1.09008 * 109.47028 * 305.00403 * 3 2 1 5 5 C 1.52999 * 109.47041 * 64.99813 * 3 2 1 6 6 C 1.52999 * 109.47071 * 180.02562 * 5 3 2 7 7 C 1.53003 * 109.47134 * 299.99840 * 6 5 3 8 8 H 1.09006 * 109.46857 * 300.00315 * 7 6 5 9 9 N 1.46493 * 109.47404 * 180.02562 * 7 6 5 10 10 S 1.65600 * 120.00353 * 97.40012 * 9 7 6 11 11 O 1.42097 * 106.40053 * 180.43302 * 10 9 7 12 12 O 1.42099 * 106.39910 * 313.35019 * 10 9 7 13 13 C 1.76196 * 107.21735 * 66.88947 * 10 9 7 14 14 C 1.33388 * 122.53887 * 165.59201 * 13 10 9 15 15 C 1.50705 * 125.20311 * 0.02617 * 14 13 10 16 16 O 1.42900 * 109.46946 * 39.63518 * 15 14 13 17 17 Si 1.86292 * 109.47245 * 159.63569 * 15 14 13 18 18 S 1.75887 * 109.59345 * 179.90772 * 14 13 10 19 19 C 1.75876 * 90.96885 * 0.30106 * 18 14 13 20 20 C 1.33382 * 109.59609 * 359.83149 * 19 18 14 21 21 C 1.53001 * 109.46876 * 59.99763 * 7 6 5 22 22 C 1.52997 * 109.47219 * 185.00222 * 3 2 1 23 23 H 1.09003 * 109.46646 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.46932 * 299.99625 * 1 2 3 25 25 H 1.09002 * 109.46955 * 60.00322 * 1 2 3 26 26 H 1.09003 * 109.47278 * 240.00336 * 2 1 3 27 27 H 1.09003 * 109.47419 * 119.99933 * 2 1 3 28 28 H 1.08992 * 109.47138 * 60.00343 * 5 3 2 29 29 H 1.09005 * 109.47089 * 300.00011 * 5 3 2 30 30 H 1.09005 * 109.47117 * 180.02562 * 6 5 3 31 31 H 1.08997 * 109.47768 * 59.99874 * 6 5 3 32 32 H 0.97004 * 119.99814 * 277.39888 * 9 7 6 33 33 H 1.08996 * 109.47083 * 279.63489 * 15 14 13 34 34 H 0.96698 * 113.99983 * 184.95835 * 16 15 14 35 35 H 1.48494 * 110.00307 * 178.68235 * 17 15 14 36 36 H 1.48505 * 110.00094 * 300.00149 * 17 15 14 37 37 H 1.08007 * 125.20027 * 179.86890 * 19 18 14 38 38 H 1.07999 * 122.54067 * 180.02562 * 20 19 18 39 39 H 1.09004 * 109.47233 * 179.97438 * 21 7 6 40 40 H 1.09006 * 109.46926 * 60.00595 * 21 7 6 41 41 H 1.08989 * 109.47347 * 60.00281 * 22 3 2 42 42 H 1.09001 * 109.47048 * 299.99391 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 2.1447 3.5692 1.3071 7 6 3.6695 3.5716 1.1811 8 1 4.1045 3.0327 2.0230 9 7 4.1575 4.9529 1.1815 10 16 4.7238 5.6307 2.5822 11 8 5.1066 6.9603 2.2584 12 8 3.7731 5.3196 3.5915 13 6 6.2041 4.7776 3.0131 14 6 7.0625 5.2440 3.9213 15 6 6.8999 6.5295 4.6909 16 8 5.5292 6.6931 5.0605 17 14 7.9543 6.4721 6.2256 18 16 8.4117 4.1276 4.0856 19 6 7.7179 3.0633 2.8694 20 6 6.5672 3.5756 2.4306 21 6 4.0743 2.8875 -0.1262 22 6 3.5648 1.4443 -0.1258 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.0698 1.5876 2.1491 29 1 0.5489 2.1252 1.3969 30 1 1.8567 4.0564 2.2387 31 1 1.7098 4.1081 0.4653 32 1 4.1488 5.4705 0.3611 33 1 7.2107 7.3679 4.0676 34 1 5.3365 7.5361 5.4932 35 1 7.8274 7.7466 6.9770 36 1 7.5405 5.3331 7.0839 37 1 8.1563 2.1363 2.5302 38 1 5.9643 3.0892 1.6781 39 1 5.1606 2.8895 -0.2162 40 1 3.6394 3.4263 -0.9680 41 1 3.8532 0.9571 -1.0571 42 1 3.9995 0.9054 0.7161 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10466082_14772022.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:03:33 Heat of formation + Delta-G solvation = -84.813189 kcal Electronic energy + Delta-G solvation = -25801.175544 eV Core-core repulsion = 22193.852400 eV Total energy + Delta-G solvation = -3607.323144 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 332.095 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.24532 -39.56788 -38.22349 -37.86922 -36.87263 -36.40966 -33.04087 -32.00651 -31.69719 -28.82628 -27.56042 -24.53453 -24.47015 -23.48214 -21.75627 -21.72330 -20.95975 -20.13541 -19.07580 -18.67785 -18.20637 -17.60388 -17.52648 -16.50533 -16.17996 -15.85039 -15.60994 -15.32128 -15.10323 -14.99419 -14.48465 -14.41899 -14.36139 -14.07923 -14.02821 -13.73460 -13.36232 -13.23460 -13.14746 -13.06834 -13.04992 -12.81221 -12.63914 -12.39624 -12.32423 -12.25909 -12.03007 -11.73787 -11.62291 -11.35570 -11.20480 -11.05536 -11.01799 -10.42394 -10.08121 -9.70574 -5.21281 -0.72310 -0.51009 0.32079 0.64514 0.99411 1.16203 1.48066 1.79536 1.95672 2.66612 2.98581 3.37769 3.53696 3.62809 3.73298 3.82820 4.03520 4.05493 4.12253 4.15238 4.22064 4.27364 4.37637 4.43735 4.52632 4.58702 4.63283 4.68270 4.74657 4.79067 4.87095 4.92026 5.08990 5.11027 5.17855 5.19812 5.23882 5.25188 5.29242 5.34299 5.43286 5.54414 5.63591 6.01407 6.27863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.119 4.119 3 C -0.088 4.088 4 H 0.073 0.927 5 C -0.114 4.114 6 C -0.140 4.140 7 C 0.145 3.855 8 H 0.086 0.914 9 N -1.107 6.107 10 S 2.727 3.273 11 O -0.986 6.986 12 O -0.976 6.976 13 C -0.679 4.679 14 C -0.088 4.088 15 C -0.102 4.102 16 O -0.560 6.560 17 Si 0.762 3.238 18 S 0.198 5.802 19 C -0.205 4.205 20 C -0.107 4.107 21 C -0.124 4.124 22 C -0.113 4.113 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.428 0.572 33 H 0.121 0.879 34 H 0.411 0.589 35 H -0.246 1.246 36 H -0.278 1.278 37 H 0.208 0.792 38 H 0.172 0.828 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.056 -3.580 -3.541 7.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.156 4.156 3 C -0.106 4.106 4 H 0.091 0.909 5 C -0.152 4.152 6 C -0.179 4.179 7 C 0.039 3.961 8 H 0.103 0.897 9 N -0.869 5.869 10 S 2.815 3.185 11 O -0.977 6.977 12 O -0.966 6.966 13 C -0.780 4.780 14 C -0.209 4.209 15 C -0.210 4.210 16 O -0.373 6.373 17 Si 0.660 3.340 18 S 0.461 5.539 19 C -0.341 4.341 20 C -0.135 4.135 21 C -0.163 4.163 22 C -0.151 4.151 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.265 0.735 33 H 0.139 0.861 34 H 0.264 0.736 35 H -0.170 1.170 36 H -0.204 1.204 37 H 0.225 0.775 38 H 0.189 0.811 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.994 -3.594 -1.423 7.132 hybrid contribution -2.141 0.601 -1.012 2.443 sum 3.852 -2.993 -2.434 5.452 Atomic orbital electron populations 1.21849 0.96276 1.01568 1.01808 1.21559 0.95653 0.96223 1.02206 1.21223 0.95993 0.95854 0.97530 0.90895 1.21619 1.01167 0.94274 0.98148 1.22067 0.95179 0.98141 1.02501 1.21094 0.94610 0.79863 1.00559 0.89652 1.55496 1.78729 1.24416 1.28294 1.00786 0.73187 0.72244 0.72280 1.93504 1.84341 1.35535 1.84272 1.93546 1.60006 1.84835 1.58177 1.29761 1.24544 1.12296 1.11363 1.24081 0.99385 0.99675 0.97716 1.25137 0.90347 0.95897 1.09585 1.86470 1.23994 1.45475 1.81355 0.94519 0.84463 0.80642 0.74368 1.84000 1.20387 1.11492 1.37981 1.26346 0.99831 1.05448 1.02467 1.20061 0.98245 0.93252 1.01917 1.21931 1.02326 0.96200 0.95859 1.21608 0.94695 0.95609 1.03233 0.92906 0.92782 0.92773 0.91471 0.92054 0.91963 0.91397 0.92786 0.90563 0.73486 0.86108 0.73607 1.17036 1.20364 0.77513 0.81097 0.89541 0.90052 0.90174 0.91213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.28 9.67 71.98 0.70 0.98 16 2 C -0.12 0.37 5.40 30.59 0.17 0.53 16 3 C -0.09 0.31 2.19 -10.79 -0.02 0.29 16 4 H 0.07 -0.24 8.14 -2.38 -0.02 -0.26 16 5 C -0.11 0.08 4.96 30.59 0.15 0.23 16 6 C -0.14 -0.19 5.53 30.59 0.17 -0.02 16 7 C 0.15 -0.13 1.51 44.99 0.07 -0.06 16 8 H 0.09 -0.05 6.36 -2.38 -0.02 -0.06 16 9 N -1.11 -1.23 5.21 -169.39 -0.88 -2.11 16 10 S 2.73 25.01 4.12 -56.49 -0.23 24.77 16 11 O -0.99 -13.28 17.10 -123.47 -2.11 -15.39 16 12 O -0.98 -15.74 16.39 -120.58 -1.98 -17.72 16 13 C -0.68 -4.34 5.71 21.22 0.12 -4.22 16 14 C -0.09 -0.49 5.78 24.59 0.14 -0.35 16 15 C -0.10 -0.40 2.34 71.24 0.17 -0.23 16 16 O -0.56 -4.49 9.56 -125.69 -1.20 -5.69 16 17 Si 0.76 -0.42 31.25 68.60 2.14 1.73 16 18 S 0.20 -0.18 20.85 -56.49 -1.18 -1.36 16 19 C -0.21 0.52 11.23 66.72 0.75 1.27 16 20 C -0.11 -0.06 9.04 21.21 0.19 0.13 16 21 C -0.12 0.74 5.22 30.61 0.16 0.90 16 22 C -0.11 0.67 5.21 30.61 0.16 0.83 16 23 H 0.05 -0.09 8.14 -2.39 -0.02 -0.10 16 24 H 0.05 -0.06 6.56 -2.39 -0.02 -0.07 16 25 H 0.05 -0.09 8.14 -2.39 -0.02 -0.11 16 26 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 27 H 0.06 -0.16 8.14 -2.39 -0.02 -0.18 16 28 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 29 H 0.07 -0.01 6.57 -2.38 -0.02 -0.03 16 30 H 0.05 0.34 7.91 -2.38 -0.02 0.33 16 31 H 0.08 -0.02 8.14 -2.39 -0.02 -0.04 16 32 H 0.43 -1.33 8.86 -96.74 -0.86 -2.18 16 33 H 0.12 0.07 7.96 -2.39 -0.02 0.05 16 34 H 0.41 -0.32 8.86 -74.06 -0.66 -0.98 16 35 H -0.25 -0.28 7.11 99.48 0.71 0.42 16 36 H -0.28 -1.69 7.11 99.48 0.71 -0.98 16 37 H 0.21 -1.97 8.06 -2.91 -0.02 -1.99 16 38 H 0.17 -0.76 4.45 -2.91 -0.01 -0.77 16 39 H 0.09 -0.74 7.21 -2.39 -0.02 -0.75 16 40 H 0.08 -0.55 8.14 -2.38 -0.02 -0.57 16 41 H 0.08 -0.58 8.14 -2.39 -0.02 -0.60 16 42 H 0.07 -0.43 8.14 -2.39 -0.02 -0.45 16 Total: 0.00 -22.18 346.70 -2.95 -25.14 By element: Atomic # 1 Polarization: -9.21 SS G_CDS: -0.43 Total: -9.65 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: 2.92 Total: 0.28 kcal Atomic # 7 Polarization: -1.23 SS G_CDS: -0.88 Total: -2.11 kcal Atomic # 8 Polarization: -33.51 SS G_CDS: -5.29 Total: -38.80 kcal Atomic # 14 Polarization: -0.42 SS G_CDS: 2.14 Total: 1.73 kcal Atomic # 16 Polarization: 24.82 SS G_CDS: -1.41 Total: 23.41 kcal Total: -22.18 -2.95 -25.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10466082_14772022.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.678 kcal (2) G-P(sol) polarization free energy of solvation -22.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds