Wall clock time and date at job start Mon Mar 8 2021 09:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47274 * 2 1 4 4 H 1.08998 * 109.47407 * 305.00317 * 3 2 1 5 5 C 1.53002 * 109.46948 * 65.00507 * 3 2 1 6 6 C 1.53006 * 109.46951 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.46908 * 299.99522 * 6 5 3 8 8 H 1.08998 * 109.47326 * 300.00336 * 7 6 5 9 9 N 1.46506 * 109.46691 * 180.02562 * 7 6 5 10 10 S 1.65597 * 119.99791 * 95.00526 * 9 7 6 11 11 O 1.42102 * 106.40060 * 178.54054 * 10 9 7 12 12 O 1.42101 * 106.40207 * 311.45359 * 10 9 7 13 13 C 1.76196 * 107.22133 * 64.99502 * 10 9 7 14 14 C 1.33390 * 122.54330 * 269.70860 * 13 10 9 15 15 S 1.75881 * 109.59624 * 179.90469 * 14 13 10 16 16 C 1.75886 * 90.96874 * 0.30318 * 15 14 13 17 17 C 1.50706 * 125.20445 * 179.86636 * 16 15 14 18 18 O 1.42898 * 109.47154 * 244.96235 * 17 16 15 19 19 Si 1.86306 * 109.46728 * 4.95744 * 17 16 15 20 20 C 1.33387 * 109.59561 * 359.82773 * 16 15 14 21 21 C 1.53002 * 109.46924 * 60.00462 * 7 6 5 22 22 C 1.52996 * 109.46948 * 299.99507 * 21 7 6 23 23 H 1.09002 * 109.47210 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46982 * 299.99972 * 1 2 3 25 25 H 1.08999 * 109.47070 * 59.99449 * 1 2 3 26 26 H 1.09003 * 109.46982 * 240.00028 * 2 1 3 27 27 H 1.09002 * 109.47525 * 120.00758 * 2 1 3 28 28 H 1.09005 * 109.46792 * 299.99525 * 5 3 2 29 29 H 1.08998 * 109.47222 * 59.99696 * 5 3 2 30 30 H 1.09001 * 109.46425 * 179.97438 * 6 5 3 31 31 H 1.08995 * 109.46903 * 59.99810 * 6 5 3 32 32 H 0.96995 * 120.00050 * 274.72611 * 9 7 6 33 33 H 1.07999 * 125.19662 * 0.02705 * 14 13 10 34 34 H 1.08991 * 109.47368 * 124.95554 * 17 16 15 35 35 H 0.96694 * 114.00312 * 179.97438 * 18 17 16 36 36 H 1.48499 * 109.99918 * 300.00201 * 19 17 16 37 37 H 1.48496 * 110.00002 * 61.32326 * 19 17 16 38 38 H 1.07997 * 122.54344 * 179.97438 * 20 16 15 39 39 H 1.08998 * 109.47222 * 59.99810 * 21 7 6 40 40 H 1.09009 * 109.46538 * 179.97438 * 21 7 6 41 41 H 1.09004 * 109.46916 * 180.02562 * 22 21 7 42 42 H 1.08998 * 109.47407 * 300.00190 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 1.6353 2.1264 1.3074 6 6 2.1459 3.5688 1.3077 7 6 3.6707 3.5699 1.1823 8 1 4.1050 3.0306 2.0241 9 7 4.1597 4.9510 1.1832 10 16 4.6706 5.6475 2.5960 11 8 5.1090 6.9573 2.2620 12 8 3.6588 5.3888 3.5597 13 6 6.1001 4.7642 3.1259 14 6 6.0302 3.7023 3.9301 15 16 7.6492 3.0875 4.2373 16 6 8.3513 4.3499 3.2338 17 6 9.8237 4.5297 2.9674 18 8 10.2624 5.7666 3.5326 19 14 10.7707 3.1234 3.7399 20 6 7.3812 5.1233 2.7440 21 6 4.0754 2.8860 -0.1251 22 6 3.5648 1.4437 -0.1254 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 0.5489 2.1252 1.3970 29 1 2.0699 1.5873 2.1492 30 1 1.8572 4.0561 2.2390 31 1 1.7116 4.1081 0.4659 32 1 4.1879 5.4560 0.3555 33 1 5.1187 3.2830 4.3297 34 1 9.9999 4.5388 1.8919 35 1 11.2028 5.9483 3.3994 36 1 10.5388 3.1000 5.2065 37 1 10.3463 1.8340 3.1378 38 1 7.5802 5.9661 2.0987 39 1 3.6412 3.4253 -0.9669 40 1 5.1618 2.8872 -0.2147 41 1 3.8535 0.9563 -1.0567 42 1 3.9991 0.9043 0.7163 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_10466082_15065232.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:03:38 Heat of formation + Delta-G solvation = -89.730629 kcal Electronic energy + Delta-G solvation = -25069.343716 eV Core-core repulsion = 21461.807336 eV Total energy + Delta-G solvation = -3607.536380 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 332.095 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -40.29128 -39.43422 -38.18666 -37.61159 -36.82366 -36.49474 -33.12079 -32.03409 -31.82869 -28.92041 -27.25819 -24.88223 -24.63807 -23.61775 -21.89551 -21.32767 -20.95020 -20.08146 -18.99132 -18.55116 -18.48463 -17.77862 -17.54911 -16.29098 -16.20416 -15.83021 -15.59245 -15.49107 -15.17892 -14.64068 -14.53417 -14.45958 -14.31231 -14.20700 -14.18881 -14.06013 -13.43551 -13.21329 -13.07455 -12.98476 -12.93017 -12.86948 -12.59961 -12.47573 -12.44774 -12.23110 -12.18965 -11.83765 -11.75735 -11.50880 -11.32882 -11.12670 -10.61100 -10.48256 -10.20853 -9.88999 -5.37915 -0.74446 -0.51746 0.30096 0.55689 0.94352 1.07898 1.44014 1.75135 2.02812 2.72800 3.14177 3.38496 3.50443 3.58080 3.64270 3.69671 3.79074 3.90646 4.03219 4.07545 4.16299 4.23203 4.27186 4.31703 4.38883 4.45373 4.53988 4.60466 4.63673 4.66379 4.78776 4.86023 4.95545 4.97777 5.03708 5.07001 5.08162 5.12223 5.18673 5.22353 5.31006 5.42155 5.48521 5.87428 6.44529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.120 4.120 3 C -0.091 4.091 4 H 0.073 0.927 5 C -0.115 4.115 6 C -0.140 4.140 7 C 0.155 3.845 8 H 0.081 0.919 9 N -1.110 6.110 10 S 2.708 3.292 11 O -0.951 6.951 12 O -0.950 6.950 13 C -0.685 4.685 14 C -0.085 4.085 15 S 0.139 5.861 16 C -0.183 4.183 17 C -0.036 4.036 18 O -0.541 6.541 19 Si 0.672 3.328 20 C -0.038 4.038 21 C -0.125 4.125 22 C -0.114 4.114 23 H 0.053 0.947 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.420 0.580 33 H 0.187 0.813 34 H 0.087 0.913 35 H 0.386 0.614 36 H -0.234 1.234 37 H -0.239 1.239 38 H 0.159 0.841 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.672 -4.605 -3.759 6.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.158 4.158 3 C -0.110 4.110 4 H 0.091 0.909 5 C -0.153 4.153 6 C -0.179 4.179 7 C 0.048 3.952 8 H 0.099 0.901 9 N -0.870 5.870 10 S 2.794 3.206 11 O -0.941 6.941 12 O -0.939 6.939 13 C -0.784 4.784 14 C -0.223 4.223 15 S 0.402 5.598 16 C -0.300 4.300 17 C -0.149 4.149 18 O -0.348 6.348 19 Si 0.571 3.429 20 C -0.066 4.066 21 C -0.164 4.164 22 C -0.152 4.152 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.256 0.744 33 H 0.204 0.796 34 H 0.104 0.896 35 H 0.234 0.766 36 H -0.158 1.158 37 H -0.163 1.163 38 H 0.176 0.824 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.244 -5.937 -1.655 6.965 hybrid contribution -0.348 1.054 -1.364 1.758 sum 2.897 -4.883 -3.019 6.430 Atomic orbital electron populations 1.21832 0.95760 1.01713 1.02005 1.21568 0.96084 0.96108 1.02030 1.21261 0.95182 0.96172 0.98360 0.90888 1.21633 1.01415 0.94774 0.97473 1.22106 0.94355 0.97701 1.03730 1.20845 0.94840 0.80165 0.99369 0.90123 1.55655 1.79798 1.24308 1.27233 1.01711 0.73172 0.72826 0.72927 1.93616 1.82532 1.34547 1.83410 1.93611 1.55044 1.85388 1.59896 1.30098 1.18835 1.14007 1.15430 1.25947 1.02439 0.96681 0.97275 1.84462 0.98760 1.29882 1.46663 1.23699 0.98183 1.02152 1.05956 1.23997 0.92200 0.96622 1.02063 1.86532 1.30705 1.37597 1.79996 0.94732 0.89721 0.76720 0.81757 1.19596 0.88510 0.99087 0.99453 1.21848 1.01395 0.96315 0.96847 1.21579 0.95454 0.95672 1.02479 0.92801 0.92391 0.92747 0.91987 0.91986 0.91002 0.91732 0.90182 0.91043 0.74436 0.79629 0.89554 0.76569 1.15772 1.16290 0.82373 0.90861 0.91139 0.91286 0.91707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.19 9.67 37.15 0.36 0.55 16 2 C -0.12 0.19 5.40 -26.74 -0.14 0.04 16 3 C -0.09 0.17 2.19 -90.62 -0.20 -0.03 16 4 H 0.07 -0.11 8.14 -51.93 -0.42 -0.54 16 5 C -0.11 0.16 4.96 -26.73 -0.13 0.03 16 6 C -0.14 0.11 5.53 -26.73 -0.15 -0.04 16 7 C 0.15 -0.22 2.65 -67.93 -0.18 -0.40 16 8 H 0.08 -0.16 7.37 -51.93 -0.38 -0.54 16 9 N -1.11 1.08 5.47 -4.89 -0.03 1.05 16 10 S 2.71 5.84 5.71 -107.50 -0.61 5.22 16 11 O -0.95 -4.97 17.63 -57.17 -1.01 -5.98 16 12 O -0.95 -4.26 16.90 -57.17 -0.97 -5.23 16 13 C -0.68 -1.26 5.73 -41.21 -0.24 -1.50 16 14 C -0.08 -0.08 10.22 29.04 0.30 0.22 16 15 S 0.14 0.20 20.60 -107.50 -2.21 -2.01 16 16 C -0.18 -0.36 5.73 -36.00 -0.21 -0.57 16 17 C -0.04 0.02 2.95 36.01 0.11 0.12 16 18 O -0.54 -0.02 12.86 -35.23 -0.45 -0.47 16 19 Si 0.67 -1.08 30.98 -169.99 -5.27 -6.35 16 20 C -0.04 -0.09 9.59 -41.21 -0.40 -0.48 16 21 C -0.13 0.30 5.45 -26.73 -0.15 0.15 16 22 C -0.11 0.26 5.20 -26.73 -0.14 0.12 16 23 H 0.05 -0.06 8.14 -51.93 -0.42 -0.48 16 24 H 0.06 -0.07 6.56 -51.93 -0.34 -0.41 16 25 H 0.05 -0.06 8.14 -51.93 -0.42 -0.48 16 26 H 0.06 -0.09 8.14 -51.93 -0.42 -0.52 16 27 H 0.06 -0.09 8.14 -51.93 -0.42 -0.51 16 28 H 0.07 -0.09 6.57 -51.93 -0.34 -0.43 16 29 H 0.06 -0.09 8.14 -51.93 -0.42 -0.51 16 30 H 0.08 0.06 7.64 -51.93 -0.40 -0.34 16 31 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 32 H 0.42 -1.15 8.83 -34.47 -0.30 -1.46 16 33 H 0.19 -0.25 8.00 -52.49 -0.42 -0.67 16 34 H 0.09 -0.23 7.96 -51.93 -0.41 -0.64 16 35 H 0.39 -2.04 8.74 45.56 0.40 -1.64 16 36 H -0.23 -0.34 7.11 56.52 0.40 0.06 16 37 H -0.24 -0.07 7.11 56.52 0.40 0.33 16 38 H 0.16 0.25 7.96 -52.49 -0.42 -0.16 16 39 H 0.07 -0.20 8.14 -51.93 -0.42 -0.62 16 40 H 0.07 -0.18 8.14 -51.92 -0.42 -0.60 16 41 H 0.07 -0.16 8.14 -51.93 -0.42 -0.59 16 42 H 0.06 -0.15 8.14 -51.93 -0.42 -0.57 16 LS Contribution 358.84 15.07 5.41 5.41 Total: 0.00 -9.21 358.84 -12.77 -21.98 By element: Atomic # 1 Polarization: -5.37 SS G_CDS: -6.47 Total: -11.84 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -1.16 Total: -1.78 kcal Atomic # 7 Polarization: 1.08 SS G_CDS: -0.03 Total: 1.05 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: -2.43 Total: -11.68 kcal Atomic # 14 Polarization: -1.08 SS G_CDS: -5.27 Total: -6.35 kcal Atomic # 16 Polarization: 6.04 SS G_CDS: -2.83 Total: 3.21 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -9.21 -12.77 -21.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10466082_15065232.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.754 kcal (2) G-P(sol) polarization free energy of solvation -9.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds