Wall clock time and date at job start Mon Mar 8 2021 09:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47274 * 2 1 4 4 H 1.08998 * 109.47407 * 305.00317 * 3 2 1 5 5 C 1.53002 * 109.46948 * 65.00507 * 3 2 1 6 6 C 1.53006 * 109.46951 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.46908 * 299.99522 * 6 5 3 8 8 H 1.08998 * 109.47326 * 300.00336 * 7 6 5 9 9 N 1.46506 * 109.46691 * 180.02562 * 7 6 5 10 10 S 1.65597 * 119.99791 * 95.00526 * 9 7 6 11 11 O 1.42102 * 106.40060 * 178.54054 * 10 9 7 12 12 O 1.42101 * 106.40207 * 311.45359 * 10 9 7 13 13 C 1.76196 * 107.22133 * 64.99502 * 10 9 7 14 14 C 1.33390 * 122.54330 * 269.70860 * 13 10 9 15 15 S 1.75881 * 109.59624 * 179.90469 * 14 13 10 16 16 C 1.75886 * 90.96874 * 0.30318 * 15 14 13 17 17 C 1.50706 * 125.20445 * 179.86636 * 16 15 14 18 18 O 1.42898 * 109.47154 * 244.96235 * 17 16 15 19 19 Si 1.86306 * 109.46728 * 4.95744 * 17 16 15 20 20 C 1.33387 * 109.59561 * 359.82773 * 16 15 14 21 21 C 1.53002 * 109.46924 * 60.00462 * 7 6 5 22 22 C 1.52996 * 109.46948 * 299.99507 * 21 7 6 23 23 H 1.09002 * 109.47210 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46982 * 299.99972 * 1 2 3 25 25 H 1.08999 * 109.47070 * 59.99449 * 1 2 3 26 26 H 1.09003 * 109.46982 * 240.00028 * 2 1 3 27 27 H 1.09002 * 109.47525 * 120.00758 * 2 1 3 28 28 H 1.09005 * 109.46792 * 299.99525 * 5 3 2 29 29 H 1.08998 * 109.47222 * 59.99696 * 5 3 2 30 30 H 1.09001 * 109.46425 * 179.97438 * 6 5 3 31 31 H 1.08995 * 109.46903 * 59.99810 * 6 5 3 32 32 H 0.96995 * 120.00050 * 274.72611 * 9 7 6 33 33 H 1.07999 * 125.19662 * 0.02705 * 14 13 10 34 34 H 1.08991 * 109.47368 * 124.95554 * 17 16 15 35 35 H 0.96694 * 114.00312 * 179.97438 * 18 17 16 36 36 H 1.48499 * 109.99918 * 300.00201 * 19 17 16 37 37 H 1.48496 * 110.00002 * 61.32326 * 19 17 16 38 38 H 1.07997 * 122.54344 * 179.97438 * 20 16 15 39 39 H 1.08998 * 109.47222 * 59.99810 * 21 7 6 40 40 H 1.09009 * 109.46538 * 179.97438 * 21 7 6 41 41 H 1.09004 * 109.46916 * 180.02562 * 22 21 7 42 42 H 1.08998 * 109.47407 * 300.00190 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 1.6353 2.1264 1.3074 6 6 2.1459 3.5688 1.3077 7 6 3.6707 3.5699 1.1823 8 1 4.1050 3.0306 2.0241 9 7 4.1597 4.9510 1.1832 10 16 4.6706 5.6475 2.5960 11 8 5.1090 6.9573 2.2620 12 8 3.6588 5.3888 3.5597 13 6 6.1001 4.7642 3.1259 14 6 6.0302 3.7023 3.9301 15 16 7.6492 3.0875 4.2373 16 6 8.3513 4.3499 3.2338 17 6 9.8237 4.5297 2.9674 18 8 10.2624 5.7666 3.5326 19 14 10.7707 3.1234 3.7399 20 6 7.3812 5.1233 2.7440 21 6 4.0754 2.8860 -0.1251 22 6 3.5648 1.4437 -0.1254 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 0.5489 2.1252 1.3970 29 1 2.0699 1.5873 2.1492 30 1 1.8572 4.0561 2.2390 31 1 1.7116 4.1081 0.4659 32 1 4.1879 5.4560 0.3555 33 1 5.1187 3.2830 4.3297 34 1 9.9999 4.5388 1.8919 35 1 11.2028 5.9483 3.3994 36 1 10.5388 3.1000 5.2065 37 1 10.3463 1.8340 3.1378 38 1 7.5802 5.9661 2.0987 39 1 3.6412 3.4253 -0.9669 40 1 5.1618 2.8872 -0.2147 41 1 3.8535 0.9563 -1.0567 42 1 3.9991 0.9043 0.7163 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10466082_15065232.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:03:37 Heat of formation + Delta-G solvation = -90.462119 kcal Electronic energy + Delta-G solvation = -25069.375436 eV Core-core repulsion = 21461.807336 eV Total energy + Delta-G solvation = -3607.568100 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 332.095 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.18572 -39.49339 -38.46155 -37.57689 -37.11066 -36.43020 -33.04151 -32.08116 -31.71022 -28.82899 -27.29005 -24.95963 -24.53707 -23.49889 -21.79243 -21.37944 -20.88168 -20.16445 -19.04819 -18.63637 -18.47167 -17.91806 -17.54411 -16.29752 -16.26470 -15.79018 -15.53561 -15.48888 -15.08685 -14.60600 -14.49800 -14.42696 -14.35263 -14.27195 -14.18234 -14.07194 -13.42755 -13.41224 -13.31726 -13.07740 -12.98257 -12.82462 -12.67254 -12.40171 -12.35581 -12.25088 -12.04043 -11.94765 -11.65000 -11.37628 -11.22008 -11.03432 -10.58235 -10.42284 -10.25094 -9.99228 -5.26320 -0.88780 -0.62862 0.21632 0.46559 0.85383 1.14046 1.52520 1.82751 1.94543 2.57064 3.10972 3.36985 3.62369 3.67266 3.71020 3.78984 3.83206 4.03923 4.06102 4.14386 4.23267 4.34348 4.36740 4.43384 4.50107 4.53434 4.58565 4.66544 4.74408 4.76569 4.77505 4.91070 4.93351 5.07987 5.15809 5.17565 5.22821 5.24167 5.29795 5.32343 5.41506 5.53785 5.61742 5.99265 6.80458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.119 4.119 3 C -0.087 4.087 4 H 0.072 0.928 5 C -0.114 4.114 6 C -0.140 4.140 7 C 0.150 3.850 8 H 0.087 0.913 9 N -1.098 6.098 10 S 2.724 3.276 11 O -0.985 6.985 12 O -0.976 6.976 13 C -0.689 4.689 14 C -0.082 4.082 15 S 0.129 5.871 16 C -0.196 4.196 17 C -0.047 4.047 18 O -0.563 6.563 19 Si 0.757 3.243 20 C -0.052 4.052 21 C -0.121 4.121 22 C -0.112 4.112 23 H 0.051 0.949 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.430 0.570 33 H 0.206 0.794 34 H 0.112 0.888 35 H 0.407 0.593 36 H -0.279 1.279 37 H -0.264 1.264 38 H 0.161 0.839 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.387 -5.181 -4.610 8.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.157 4.157 3 C -0.106 4.106 4 H 0.090 0.910 5 C -0.152 4.152 6 C -0.180 4.180 7 C 0.044 3.956 8 H 0.105 0.895 9 N -0.860 5.860 10 S 2.812 3.188 11 O -0.975 6.975 12 O -0.966 6.966 13 C -0.789 4.789 14 C -0.220 4.220 15 S 0.392 5.608 16 C -0.313 4.313 17 C -0.159 4.159 18 O -0.374 6.374 19 Si 0.660 3.340 20 C -0.081 4.081 21 C -0.160 4.160 22 C -0.151 4.151 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.267 0.733 33 H 0.223 0.777 34 H 0.129 0.871 35 H 0.259 0.741 36 H -0.206 1.206 37 H -0.189 1.189 38 H 0.178 0.822 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.970 -6.479 -2.537 8.011 hybrid contribution -0.577 1.196 -1.072 1.707 sum 3.392 -5.283 -3.609 7.242 Atomic orbital electron populations 1.21842 0.96113 1.01575 1.01899 1.21557 0.95766 0.96271 1.02080 1.21218 0.95604 0.95867 0.97899 0.91006 1.21621 1.01269 0.94397 0.97888 1.22098 0.94870 0.98017 1.02985 1.20993 0.94457 0.79754 1.00442 0.89533 1.55367 1.79324 1.24655 1.26649 1.00940 0.72749 0.72162 0.72960 1.93564 1.83045 1.36904 1.83993 1.93575 1.56079 1.85700 1.61238 1.29993 1.18472 1.14355 1.16127 1.26221 1.02981 0.96249 0.96569 1.84518 0.99282 1.30162 1.46854 1.24102 0.99633 1.01974 1.05570 1.24248 0.90868 0.96985 1.03807 1.86476 1.32897 1.37734 1.80303 0.93757 0.88174 0.74360 0.77749 1.19731 0.88818 0.99478 1.00024 1.21826 1.01809 0.96137 0.96213 1.21577 0.94948 0.95716 1.02831 0.92959 0.92525 0.92836 0.91817 0.92025 0.91256 0.91640 0.91841 0.90729 0.73273 0.77750 0.87058 0.74053 1.20570 1.18905 0.82176 0.90289 0.90524 0.90776 0.91543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.38 9.67 71.98 0.70 1.08 16 2 C -0.12 0.41 5.40 30.59 0.17 0.58 16 3 C -0.09 0.36 2.19 -10.79 -0.02 0.34 16 4 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 5 C -0.11 0.31 4.96 30.60 0.15 0.46 16 6 C -0.14 0.18 5.53 30.60 0.17 0.35 16 7 C 0.15 -0.45 2.65 44.99 0.12 -0.33 16 8 H 0.09 -0.36 7.37 -2.39 -0.02 -0.38 16 9 N -1.10 1.96 5.47 -169.38 -0.93 1.03 16 10 S 2.72 13.95 5.71 -56.49 -0.32 13.63 16 11 O -0.98 -11.43 17.63 -128.00 -2.26 -13.69 16 12 O -0.98 -9.74 16.90 -128.00 -2.16 -11.90 16 13 C -0.69 -2.87 5.73 21.22 0.12 -2.74 16 14 C -0.08 -0.17 10.22 66.72 0.68 0.51 16 15 S 0.13 0.42 20.60 -56.49 -1.16 -0.74 16 16 C -0.20 -0.79 5.73 24.59 0.14 -0.65 16 17 C -0.05 0.08 2.95 71.24 0.21 0.29 16 18 O -0.56 0.26 12.86 -148.98 -1.92 -1.65 16 19 Si 0.76 -2.66 30.98 68.60 2.13 -0.53 16 20 C -0.05 -0.26 9.59 21.22 0.20 -0.05 16 21 C -0.12 0.69 5.45 30.59 0.17 0.85 16 22 C -0.11 0.61 5.20 30.59 0.16 0.77 16 23 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 24 H 0.06 -0.12 6.56 -2.39 -0.02 -0.14 16 25 H 0.05 -0.12 8.14 -2.39 -0.02 -0.14 16 26 H 0.06 -0.23 8.14 -2.39 -0.02 -0.25 16 27 H 0.06 -0.20 8.14 -2.39 -0.02 -0.22 16 28 H 0.07 -0.15 6.57 -2.38 -0.02 -0.17 16 29 H 0.06 -0.19 8.14 -2.39 -0.02 -0.21 16 30 H 0.06 0.15 7.64 -2.39 -0.02 0.13 16 31 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 32 H 0.43 -2.37 8.83 -96.75 -0.85 -3.22 16 33 H 0.21 -0.56 8.00 -2.91 -0.02 -0.59 16 34 H 0.11 -0.75 7.96 -2.39 -0.02 -0.77 16 35 H 0.41 -4.71 8.74 -74.06 -0.65 -5.36 16 36 H -0.28 -1.08 7.11 99.48 0.71 -0.38 16 37 H -0.26 -0.11 7.11 99.48 0.71 0.60 16 38 H 0.16 0.62 7.96 -2.91 -0.02 0.59 16 39 H 0.08 -0.51 8.14 -2.39 -0.02 -0.53 16 40 H 0.08 -0.49 8.14 -2.38 -0.02 -0.51 16 41 H 0.07 -0.44 8.14 -2.38 -0.02 -0.46 16 42 H 0.07 -0.36 8.14 -2.39 -0.02 -0.38 16 Total: 0.00 -21.27 358.84 -4.10 -25.37 By element: Atomic # 1 Polarization: -12.52 SS G_CDS: -0.43 Total: -12.95 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: 2.96 Total: 1.44 kcal Atomic # 7 Polarization: 1.96 SS G_CDS: -0.93 Total: 1.03 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -6.34 Total: -27.24 kcal Atomic # 14 Polarization: -2.66 SS G_CDS: 2.13 Total: -0.53 kcal Atomic # 16 Polarization: 14.37 SS G_CDS: -1.49 Total: 12.89 kcal Total: -21.27 -4.10 -25.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10466082_15065232.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.092 kcal (2) G-P(sol) polarization free energy of solvation -21.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds