Wall clock time and date at job start Mon Mar 8 2021 09:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46793 * 2 1 4 4 H 1.09003 * 109.46889 * 304.99448 * 3 2 1 5 5 C 1.52998 * 109.47091 * 64.99718 * 3 2 1 6 6 C 1.52999 * 109.46863 * 180.02562 * 5 3 2 7 7 C 1.53004 * 109.47391 * 299.99973 * 6 5 3 8 8 H 1.09000 * 109.46737 * 300.00476 * 7 6 5 9 9 N 1.46493 * 109.47610 * 179.97438 * 7 6 5 10 10 S 1.65604 * 119.99886 * 94.99603 * 9 7 6 11 11 O 1.42101 * 106.40191 * 178.54024 * 10 9 7 12 12 O 1.42095 * 106.40470 * 311.46579 * 10 9 7 13 13 C 1.76206 * 107.21582 * 65.00525 * 10 9 7 14 14 C 1.33382 * 122.53829 * 96.68158 * 13 10 9 15 15 C 1.50695 * 125.20542 * 359.97438 * 14 13 10 16 16 S 1.75895 * 109.58994 * 180.02562 * 14 13 10 17 17 C 1.75882 * 90.96907 * 359.97438 * 16 14 13 18 18 C 1.50706 * 125.20281 * 180.02562 * 17 16 14 19 19 C 1.33384 * 109.59520 * 359.73250 * 17 16 14 20 20 C 1.50706 * 122.54273 * 180.23689 * 19 17 16 21 21 O 1.42904 * 109.46696 * 53.49127 * 20 19 17 22 22 Si 1.86304 * 109.47049 * 293.49685 * 20 19 17 23 23 C 1.53002 * 109.46809 * 59.99722 * 7 6 5 24 24 C 1.52998 * 109.46901 * 184.99815 * 3 2 1 25 25 H 1.09004 * 109.47853 * 300.00277 * 1 2 3 26 26 H 1.09002 * 109.47114 * 60.00735 * 1 2 3 27 27 H 1.09002 * 109.46885 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47334 * 239.99436 * 2 1 3 29 29 H 1.09002 * 109.47114 * 119.99265 * 2 1 3 30 30 H 1.09007 * 109.47005 * 299.99655 * 5 3 2 31 31 H 1.08996 * 109.47373 * 60.00449 * 5 3 2 32 32 H 1.09000 * 109.47569 * 59.99940 * 6 5 3 33 33 H 1.09002 * 109.47170 * 180.02562 * 6 5 3 34 34 H 0.96998 * 120.00095 * 275.00107 * 9 7 6 35 35 H 1.09004 * 109.46687 * 90.00700 * 15 14 13 36 36 H 1.09005 * 109.46956 * 209.99644 * 15 14 13 37 37 H 1.08992 * 109.47110 * 330.00268 * 15 14 13 38 38 H 1.09007 * 109.46865 * 354.49197 * 18 17 16 39 39 H 1.08998 * 109.46946 * 114.48757 * 18 17 16 40 40 H 1.08997 * 109.47377 * 234.49191 * 18 17 16 41 41 H 1.08998 * 109.47635 * 173.49152 * 20 19 17 42 42 H 0.96703 * 114.00296 * 292.14920 * 21 20 19 43 43 H 1.48500 * 110.00178 * 72.03401 * 22 20 19 44 44 H 1.48503 * 109.99740 * 193.35475 * 22 20 19 45 45 H 1.08997 * 109.46669 * 180.02562 * 23 7 6 46 46 H 1.09000 * 109.46855 * 60.00827 * 23 7 6 47 47 H 1.09002 * 109.47060 * 59.99835 * 24 3 2 48 48 H 1.09003 * 109.47050 * 299.99535 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 1.6351 2.1266 1.3073 6 6 2.1444 3.5693 1.3070 7 6 3.6693 3.5718 1.1810 8 1 4.1042 3.0331 2.0228 9 7 4.1570 4.9532 1.1801 10 16 4.6677 5.6519 2.5920 11 8 5.1049 6.9617 2.2563 12 8 3.6566 5.3934 3.5563 13 6 6.0982 4.7705 3.1225 14 6 7.3372 5.1905 2.8622 15 6 7.6880 6.4418 2.0991 16 16 8.4988 4.0597 3.5446 17 6 7.1980 3.0509 4.1639 18 6 7.3842 1.7730 4.9407 19 6 6.0214 3.5931 3.8463 20 6 4.7079 2.9680 4.2403 21 8 4.6955 2.7346 5.6501 22 14 4.4956 1.3502 3.3411 23 6 4.0741 2.8877 -0.1263 24 6 3.5647 1.4444 -0.1257 25 1 -0.3635 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 0.5487 2.1253 1.3968 31 1 2.0697 1.5877 2.1491 32 1 1.7095 4.1081 0.4652 33 1 1.8564 4.0565 2.2385 34 1 4.1808 5.4586 0.3525 35 1 7.7760 7.2778 2.7930 36 1 8.6366 6.2978 1.5817 37 1 6.9055 6.6546 1.3709 38 1 8.4439 1.5197 4.9750 39 1 7.0097 1.9069 5.9556 40 1 6.8339 0.9681 4.4536 41 1 3.8918 3.6404 3.9761 42 1 5.3169 2.0534 5.9415 43 1 5.4197 0.3322 3.9022 44 1 3.0912 0.8828 3.4616 45 1 5.1604 2.8891 -0.2158 46 1 3.6392 3.4265 -0.9681 47 1 3.8531 0.9571 -1.0570 48 1 3.9993 0.9055 0.7162 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_10466082_15065288.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:03:42 Heat of formation + Delta-G solvation = -76.516684 kcal Electronic energy + Delta-G solvation = -31167.364178 eV Core-core repulsion = 27249.325559 eV Total energy + Delta-G solvation = -3918.038618 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 360.126 amu Computer time = 2.45 seconds Orbital eigenvalues (eV) -40.59657 -40.22618 -38.49287 -37.27201 -36.91528 -36.54153 -34.14992 -33.14490 -31.86368 -31.12599 -28.97441 -28.08068 -26.00454 -24.65367 -23.64156 -23.20374 -21.95632 -21.29585 -20.72592 -20.13198 -18.97937 -18.50623 -18.00626 -17.77031 -17.00075 -16.27708 -16.23522 -15.89873 -15.77975 -15.54031 -15.51825 -15.14838 -14.78661 -14.66780 -14.52668 -14.49129 -14.24261 -14.19365 -13.97873 -13.65855 -13.54873 -13.43139 -13.24108 -13.20516 -13.03176 -12.89771 -12.77750 -12.57594 -12.50133 -12.42740 -12.31955 -12.08884 -11.76446 -11.64412 -11.45510 -11.32975 -11.20822 -10.97853 -10.78211 -10.52175 -9.99953 -9.39612 -5.07459 -0.76181 -0.42477 0.38135 0.67635 0.80499 1.16540 1.36746 1.82835 1.99986 2.65277 3.20680 3.31989 3.45077 3.45953 3.56106 3.66369 3.70572 3.85926 3.95205 3.99863 4.03222 4.04960 4.18582 4.25211 4.29366 4.30660 4.39096 4.43767 4.48891 4.50583 4.54252 4.62244 4.63703 4.66986 4.73407 4.77877 4.95400 4.96531 4.97769 5.05650 5.07545 5.09134 5.10766 5.18849 5.20297 5.22650 5.29627 5.43536 5.49402 5.83248 6.38831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.122 4.122 3 C -0.092 4.092 4 H 0.077 0.923 5 C -0.131 4.131 6 C -0.143 4.143 7 C 0.155 3.845 8 H 0.073 0.927 9 N -1.109 6.109 10 S 2.700 3.300 11 O -0.950 6.950 12 O -0.941 6.941 13 C -0.684 4.684 14 C -0.044 4.044 15 C -0.116 4.116 16 S 0.162 5.838 17 C -0.191 4.191 18 C -0.111 4.111 19 C -0.062 4.062 20 C -0.095 4.095 21 O -0.513 6.513 22 Si 0.625 3.375 23 C -0.126 4.126 24 C -0.116 4.116 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.422 0.578 35 H 0.099 0.901 36 H 0.081 0.919 37 H 0.105 0.895 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.155 0.845 42 H 0.364 0.636 43 H -0.235 1.235 44 H -0.227 1.227 45 H 0.077 0.923 46 H 0.080 0.920 47 H 0.077 0.923 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.557 -3.560 -5.703 7.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.160 4.160 3 C -0.110 4.110 4 H 0.096 0.904 5 C -0.168 4.168 6 C -0.182 4.182 7 C 0.049 3.951 8 H 0.090 0.910 9 N -0.869 5.869 10 S 2.789 3.211 11 O -0.940 6.940 12 O -0.931 6.931 13 C -0.783 4.783 14 C -0.166 4.166 15 C -0.175 4.175 16 S 0.429 5.571 17 C -0.308 4.308 18 C -0.169 4.169 19 C -0.073 4.073 20 C -0.206 4.206 21 O -0.320 6.320 22 Si 0.524 3.476 23 C -0.165 4.165 24 C -0.153 4.153 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.258 0.742 35 H 0.117 0.883 36 H 0.100 0.900 37 H 0.123 0.877 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.107 0.893 41 H 0.172 0.828 42 H 0.213 0.787 43 H -0.160 1.160 44 H -0.151 1.151 45 H 0.096 0.904 46 H 0.098 0.902 47 H 0.095 0.905 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.133 -3.427 -4.991 6.817 hybrid contribution -0.373 -0.289 0.868 0.987 sum 2.760 -3.716 -4.124 6.200 Atomic orbital electron populations 1.21835 0.95749 1.01736 1.02035 1.21588 0.96155 0.96107 1.02130 1.21270 0.95151 0.96268 0.98301 0.90425 1.21895 1.01937 0.94898 0.98108 1.22157 0.93924 0.97959 1.04185 1.21037 0.94955 0.80213 0.98853 0.90983 1.55650 1.79986 1.23925 1.27364 1.01779 0.73522 0.72881 0.72959 1.93596 1.82317 1.34770 1.83294 1.93495 1.55712 1.84308 1.59549 1.29372 1.17133 1.12551 1.19274 1.24600 0.94857 0.99500 0.97597 1.21014 1.04101 0.91761 1.00584 1.84350 1.08506 1.14714 1.49557 1.24223 0.95284 1.02979 1.08352 1.20839 1.04325 0.92436 0.99265 1.18519 0.96279 0.93576 0.98899 1.25782 0.97419 1.10147 0.87285 1.86744 1.64586 1.60903 1.19807 0.95618 0.83334 0.76757 0.91855 1.21891 1.02000 0.96226 0.96404 1.21694 0.95491 0.95726 1.02438 0.92431 0.92634 0.92810 0.91691 0.92056 0.90608 0.91239 0.90254 0.90027 0.74185 0.88287 0.89973 0.87665 0.90128 0.89995 0.89294 0.82797 0.78676 1.16044 1.15065 0.90387 0.90181 0.90468 0.91593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.23 9.67 37.16 0.36 0.59 16 2 C -0.12 0.23 5.40 -26.73 -0.14 0.09 16 3 C -0.09 0.22 2.19 -90.62 -0.20 0.02 16 4 H 0.08 -0.21 8.14 -51.93 -0.42 -0.63 16 5 C -0.13 0.15 4.84 -26.73 -0.13 0.02 16 6 C -0.14 0.14 5.53 -26.73 -0.15 -0.01 16 7 C 0.16 -0.23 2.33 -67.93 -0.16 -0.39 16 8 H 0.07 -0.06 1.04 -51.93 -0.05 -0.11 16 9 N -1.11 1.69 5.47 -4.89 -0.03 1.66 16 10 S 2.70 5.76 5.32 -107.50 -0.57 5.19 16 11 O -0.95 -3.37 14.67 -57.17 -0.84 -4.21 16 12 O -0.94 -4.78 14.02 -57.17 -0.80 -5.58 16 13 C -0.68 -1.40 5.75 -41.21 -0.24 -1.63 16 14 C -0.04 -0.04 6.50 -36.01 -0.23 -0.28 16 15 C -0.12 0.07 9.14 36.00 0.33 0.40 16 16 S 0.16 0.03 23.31 -107.50 -2.51 -2.47 16 17 C -0.19 -0.22 6.09 -36.00 -0.22 -0.44 16 18 C -0.11 0.09 8.58 36.01 0.31 0.40 16 19 C -0.06 -0.14 4.14 -106.25 -0.44 -0.58 16 20 C -0.10 -0.28 2.17 36.01 0.08 -0.20 16 21 O -0.51 -2.06 12.88 -35.23 -0.45 -2.52 16 22 Si 0.62 0.34 22.60 -169.99 -3.84 -3.50 16 23 C -0.13 0.45 5.45 -26.70 -0.15 0.30 16 24 C -0.12 0.37 5.08 -26.71 -0.14 0.24 16 25 H 0.06 -0.07 6.57 -51.93 -0.34 -0.41 16 26 H 0.05 -0.09 8.14 -51.93 -0.42 -0.51 16 27 H 0.05 -0.07 8.14 -51.93 -0.42 -0.49 16 28 H 0.06 -0.15 8.14 -51.93 -0.42 -0.57 16 29 H 0.06 -0.09 8.14 -51.93 -0.42 -0.51 16 30 H 0.08 -0.09 6.57 -51.93 -0.34 -0.43 16 31 H 0.07 -0.02 4.55 -51.93 -0.24 -0.25 16 32 H 0.08 -0.17 8.14 -51.93 -0.42 -0.59 16 33 H 0.08 0.05 7.64 -51.93 -0.40 -0.35 16 34 H 0.42 -1.73 8.84 -34.47 -0.30 -2.03 16 35 H 0.10 -0.05 8.14 -51.93 -0.42 -0.47 16 36 H 0.08 -0.22 8.14 -51.93 -0.42 -0.65 16 37 H 0.11 -0.09 5.97 -51.93 -0.31 -0.40 16 38 H 0.08 -0.17 8.14 -51.93 -0.42 -0.59 16 39 H 0.08 -0.14 6.33 -51.93 -0.33 -0.46 16 40 H 0.09 -0.10 4.52 -51.93 -0.23 -0.33 16 41 H 0.16 0.60 3.75 -51.93 -0.19 0.41 16 42 H 0.36 0.24 5.32 45.56 0.24 0.48 16 43 H -0.23 -0.13 5.34 56.52 0.30 0.17 16 44 H -0.23 -0.40 5.75 56.52 0.33 -0.08 16 45 H 0.08 -0.34 8.14 -51.93 -0.42 -0.77 16 46 H 0.08 -0.36 8.14 -51.93 -0.42 -0.78 16 47 H 0.08 -0.31 8.14 -51.93 -0.42 -0.74 16 48 H 0.07 -0.21 5.26 -51.93 -0.27 -0.49 16 LS Contribution 356.29 15.07 5.37 5.37 Total: 0.00 -7.14 356.29 -12.00 -19.14 By element: Atomic # 1 Polarization: -4.38 SS G_CDS: -7.22 Total: -11.60 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: -1.11 Total: -1.49 kcal Atomic # 7 Polarization: 1.69 SS G_CDS: -0.03 Total: 1.66 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: -2.09 Total: -12.31 kcal Atomic # 14 Polarization: 0.34 SS G_CDS: -3.84 Total: -3.50 kcal Atomic # 16 Polarization: 5.80 SS G_CDS: -3.08 Total: 2.72 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -7.14 -12.00 -19.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10466082_15065288.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.376 kcal (2) G-P(sol) polarization free energy of solvation -7.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.45 seconds