Wall clock time and date at job start Mon Mar 8 2021 09:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46793 * 2 1 4 4 H 1.09003 * 109.46889 * 304.99448 * 3 2 1 5 5 C 1.52998 * 109.47091 * 64.99718 * 3 2 1 6 6 C 1.52999 * 109.46863 * 180.02562 * 5 3 2 7 7 C 1.53004 * 109.47391 * 299.99973 * 6 5 3 8 8 H 1.09000 * 109.46737 * 300.00476 * 7 6 5 9 9 N 1.46493 * 109.47610 * 179.97438 * 7 6 5 10 10 S 1.65604 * 119.99886 * 94.99603 * 9 7 6 11 11 O 1.42101 * 106.40191 * 178.54024 * 10 9 7 12 12 O 1.42095 * 106.40470 * 311.46579 * 10 9 7 13 13 C 1.76206 * 107.21582 * 65.00525 * 10 9 7 14 14 C 1.33382 * 122.53829 * 96.68158 * 13 10 9 15 15 C 1.50695 * 125.20542 * 359.97438 * 14 13 10 16 16 S 1.75895 * 109.58994 * 180.02562 * 14 13 10 17 17 C 1.75882 * 90.96907 * 359.97438 * 16 14 13 18 18 C 1.50706 * 125.20281 * 180.02562 * 17 16 14 19 19 C 1.33384 * 109.59520 * 359.73250 * 17 16 14 20 20 C 1.50706 * 122.54273 * 180.23689 * 19 17 16 21 21 O 1.42904 * 109.46696 * 53.49127 * 20 19 17 22 22 Si 1.86304 * 109.47049 * 293.49685 * 20 19 17 23 23 C 1.53002 * 109.46809 * 59.99722 * 7 6 5 24 24 C 1.52998 * 109.46901 * 184.99815 * 3 2 1 25 25 H 1.09004 * 109.47853 * 300.00277 * 1 2 3 26 26 H 1.09002 * 109.47114 * 60.00735 * 1 2 3 27 27 H 1.09002 * 109.46885 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47334 * 239.99436 * 2 1 3 29 29 H 1.09002 * 109.47114 * 119.99265 * 2 1 3 30 30 H 1.09007 * 109.47005 * 299.99655 * 5 3 2 31 31 H 1.08996 * 109.47373 * 60.00449 * 5 3 2 32 32 H 1.09000 * 109.47569 * 59.99940 * 6 5 3 33 33 H 1.09002 * 109.47170 * 180.02562 * 6 5 3 34 34 H 0.96998 * 120.00095 * 275.00107 * 9 7 6 35 35 H 1.09004 * 109.46687 * 90.00700 * 15 14 13 36 36 H 1.09005 * 109.46956 * 209.99644 * 15 14 13 37 37 H 1.08992 * 109.47110 * 330.00268 * 15 14 13 38 38 H 1.09007 * 109.46865 * 354.49197 * 18 17 16 39 39 H 1.08998 * 109.46946 * 114.48757 * 18 17 16 40 40 H 1.08997 * 109.47377 * 234.49191 * 18 17 16 41 41 H 1.08998 * 109.47635 * 173.49152 * 20 19 17 42 42 H 0.96703 * 114.00296 * 292.14920 * 21 20 19 43 43 H 1.48500 * 110.00178 * 72.03401 * 22 20 19 44 44 H 1.48503 * 109.99740 * 193.35475 * 22 20 19 45 45 H 1.08997 * 109.46669 * 180.02562 * 23 7 6 46 46 H 1.09000 * 109.46855 * 60.00827 * 23 7 6 47 47 H 1.09002 * 109.47060 * 59.99835 * 24 3 2 48 48 H 1.09003 * 109.47050 * 299.99535 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 1.6351 2.1266 1.3073 6 6 2.1444 3.5693 1.3070 7 6 3.6693 3.5718 1.1810 8 1 4.1042 3.0331 2.0228 9 7 4.1570 4.9532 1.1801 10 16 4.6677 5.6519 2.5920 11 8 5.1049 6.9617 2.2563 12 8 3.6566 5.3934 3.5563 13 6 6.0982 4.7705 3.1225 14 6 7.3372 5.1905 2.8622 15 6 7.6880 6.4418 2.0991 16 16 8.4988 4.0597 3.5446 17 6 7.1980 3.0509 4.1639 18 6 7.3842 1.7730 4.9407 19 6 6.0214 3.5931 3.8463 20 6 4.7079 2.9680 4.2403 21 8 4.6955 2.7346 5.6501 22 14 4.4956 1.3502 3.3411 23 6 4.0741 2.8877 -0.1263 24 6 3.5647 1.4444 -0.1257 25 1 -0.3635 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 0.5487 2.1253 1.3968 31 1 2.0697 1.5877 2.1491 32 1 1.7095 4.1081 0.4652 33 1 1.8564 4.0565 2.2385 34 1 4.1808 5.4586 0.3525 35 1 7.7760 7.2778 2.7930 36 1 8.6366 6.2978 1.5817 37 1 6.9055 6.6546 1.3709 38 1 8.4439 1.5197 4.9750 39 1 7.0097 1.9069 5.9556 40 1 6.8339 0.9681 4.4536 41 1 3.8918 3.6404 3.9761 42 1 5.3169 2.0534 5.9415 43 1 5.4197 0.3322 3.9022 44 1 3.0912 0.8828 3.4616 45 1 5.1604 2.8891 -0.2158 46 1 3.6392 3.4265 -0.9681 47 1 3.8531 0.9571 -1.0570 48 1 3.9993 0.9055 0.7162 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10466082_15065288.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:03:41 Heat of formation + Delta-G solvation = -75.838198 kcal Electronic energy + Delta-G solvation = -31167.334756 eV Core-core repulsion = 27249.325559 eV Total energy + Delta-G solvation = -3918.009197 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 360.126 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.60496 -40.15461 -38.69039 -37.45380 -37.14853 -36.44064 -34.16677 -33.02120 -31.69862 -31.10364 -28.85358 -28.15089 -26.02629 -24.52750 -23.47335 -23.26872 -21.80986 -21.22300 -20.74602 -20.21290 -19.03902 -18.59645 -18.13473 -17.74175 -17.08349 -16.31944 -16.25963 -15.96969 -15.73074 -15.55181 -15.42443 -15.10601 -14.75986 -14.60048 -14.47077 -14.43808 -14.21499 -14.10466 -13.99741 -13.76772 -13.53495 -13.41903 -13.37827 -13.17686 -13.02876 -12.81354 -12.80019 -12.63849 -12.42180 -12.33703 -12.25021 -11.93107 -11.70445 -11.63887 -11.42980 -11.17760 -11.12169 -10.93620 -10.87236 -10.42019 -10.02406 -9.44116 -5.12346 -0.86642 -0.48254 0.36078 0.61719 0.73508 1.06831 1.30964 1.75897 1.95066 2.53025 3.09590 3.23753 3.43939 3.58641 3.64547 3.74422 3.82364 3.94684 4.01408 4.06595 4.13482 4.18786 4.24984 4.36709 4.39692 4.46126 4.46867 4.55043 4.57114 4.62573 4.65597 4.71967 4.76932 4.80991 4.81427 4.92416 4.95417 5.11356 5.12777 5.16729 5.20951 5.25361 5.26302 5.27335 5.32708 5.38533 5.45759 5.57967 5.67257 6.04927 6.32271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.123 4.123 3 C -0.088 4.088 4 H 0.086 0.914 5 C -0.133 4.133 6 C -0.145 4.145 7 C 0.151 3.849 8 H 0.065 0.935 9 N -1.094 6.094 10 S 2.707 3.293 11 O -0.970 6.970 12 O -0.978 6.978 13 C -0.696 4.696 14 C -0.049 4.049 15 C -0.122 4.122 16 S 0.193 5.807 17 C -0.198 4.198 18 C -0.116 4.116 19 C -0.077 4.077 20 C -0.117 4.117 21 O -0.538 6.538 22 Si 0.682 3.318 23 C -0.123 4.123 24 C -0.118 4.118 25 H 0.050 0.950 26 H 0.058 0.942 27 H 0.050 0.950 28 H 0.074 0.926 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.093 0.907 33 H 0.058 0.942 34 H 0.435 0.565 35 H 0.096 0.904 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.139 0.861 42 H 0.375 0.625 43 H -0.230 1.230 44 H -0.253 1.253 45 H 0.093 0.907 46 H 0.095 0.905 47 H 0.094 0.906 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.110 -4.336 -7.330 9.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.160 4.160 3 C -0.106 4.106 4 H 0.104 0.896 5 C -0.171 4.171 6 C -0.185 4.185 7 C 0.045 3.955 8 H 0.082 0.918 9 N -0.857 5.857 10 S 2.797 3.203 11 O -0.960 6.960 12 O -0.968 6.968 13 C -0.797 4.797 14 C -0.171 4.171 15 C -0.181 4.181 16 S 0.460 5.540 17 C -0.316 4.316 18 C -0.174 4.174 19 C -0.088 4.088 20 C -0.226 4.226 21 O -0.348 6.348 22 Si 0.581 3.419 23 C -0.162 4.162 24 C -0.156 4.156 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.093 0.907 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.111 0.889 33 H 0.077 0.923 34 H 0.274 0.726 35 H 0.114 0.886 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.114 0.886 39 H 0.105 0.895 40 H 0.110 0.890 41 H 0.156 0.844 42 H 0.226 0.774 43 H -0.155 1.155 44 H -0.178 1.178 45 H 0.111 0.889 46 H 0.114 0.886 47 H 0.112 0.888 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.689 -4.172 -6.622 9.124 hybrid contribution -0.882 -0.015 1.409 1.663 sum 3.807 -4.187 -5.212 7.693 Atomic orbital electron populations 1.21852 0.96310 1.01511 1.01878 1.21601 0.95693 0.96489 1.02253 1.21254 0.96071 0.95787 0.97524 0.89580 1.21904 1.01656 0.94810 0.98684 1.22169 0.94674 0.98050 1.03561 1.21168 0.94367 0.79991 0.99963 0.91775 1.55309 1.79511 1.24111 1.26781 1.01266 0.73273 0.72626 0.73153 1.93561 1.82579 1.36176 1.83637 1.93461 1.57216 1.84821 1.61304 1.29273 1.17279 1.12836 1.20295 1.24857 0.94808 1.00032 0.97382 1.21142 1.05396 0.90949 1.00571 1.84194 1.07379 1.13720 1.48709 1.24529 0.95349 1.03660 1.08013 1.20959 1.05497 0.91616 0.99302 1.18510 0.96365 0.94075 0.99840 1.26073 0.97516 1.12016 0.87044 1.86691 1.65311 1.61798 1.20969 0.94942 0.81540 0.74381 0.91027 1.21931 1.03101 0.95845 0.95305 1.21760 0.94562 0.96035 1.03244 0.93120 0.92265 0.93074 0.90722 0.92725 0.91015 0.92452 0.88888 0.92350 0.72569 0.88584 0.87576 0.87625 0.88561 0.89457 0.88951 0.84439 0.77374 1.15533 1.17836 0.88862 0.88625 0.88766 0.91639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.40 9.67 71.98 0.70 1.09 16 2 C -0.12 0.48 5.40 30.60 0.17 0.65 16 3 C -0.09 0.45 2.19 -10.79 -0.02 0.43 16 4 H 0.09 -0.57 8.14 -2.39 -0.02 -0.58 16 5 C -0.13 0.15 4.84 30.59 0.15 0.30 16 6 C -0.15 0.12 5.53 30.60 0.17 0.29 16 7 C 0.15 -0.41 2.33 45.00 0.10 -0.30 16 8 H 0.07 -0.05 1.04 -2.39 0.00 -0.05 16 9 N -1.09 2.79 5.47 -169.39 -0.93 1.86 16 10 S 2.71 15.70 5.32 -56.49 -0.30 15.40 16 11 O -0.97 -8.13 14.67 -128.00 -1.88 -10.01 16 12 O -0.98 -12.70 14.02 -128.00 -1.79 -14.49 16 13 C -0.70 -3.40 5.75 21.22 0.12 -3.28 16 14 C -0.05 -0.09 6.50 24.58 0.16 0.07 16 15 C -0.12 0.19 9.14 71.23 0.65 0.85 16 16 S 0.19 -0.08 23.31 -56.49 -1.32 -1.40 16 17 C -0.20 -0.42 6.09 24.59 0.15 -0.27 16 18 C -0.12 0.27 8.58 71.24 0.61 0.88 16 19 C -0.08 -0.42 4.14 -20.92 -0.09 -0.51 16 20 C -0.12 -0.88 2.17 71.24 0.15 -0.73 16 21 O -0.54 -5.34 12.88 -148.98 -1.92 -7.26 16 22 Si 0.68 1.23 22.60 68.60 1.55 2.78 16 23 C -0.12 1.04 5.45 30.61 0.17 1.21 16 24 C -0.12 0.91 5.08 30.61 0.16 1.07 16 25 H 0.05 -0.06 6.57 -2.38 -0.02 -0.08 16 26 H 0.06 -0.19 8.14 -2.39 -0.02 -0.21 16 27 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 28 H 0.07 -0.42 8.14 -2.39 -0.02 -0.44 16 29 H 0.05 -0.14 8.14 -2.39 -0.02 -0.16 16 30 H 0.07 -0.06 6.57 -2.38 -0.02 -0.07 16 31 H 0.06 0.08 4.55 -2.39 -0.01 0.07 16 32 H 0.09 -0.38 8.14 -2.39 -0.02 -0.40 16 33 H 0.06 0.23 7.64 -2.39 -0.02 0.21 16 34 H 0.44 -3.63 8.84 -96.75 -0.85 -4.49 16 35 H 0.10 -0.08 8.14 -2.38 -0.02 -0.10 16 36 H 0.11 -0.72 8.14 -2.38 -0.02 -0.74 16 37 H 0.11 -0.17 5.97 -2.39 -0.01 -0.19 16 38 H 0.10 -0.53 8.14 -2.38 -0.02 -0.55 16 39 H 0.09 -0.30 6.33 -2.39 -0.02 -0.32 16 40 H 0.09 -0.27 4.52 -2.39 -0.01 -0.28 16 41 H 0.14 1.47 3.75 -2.41 -0.01 1.46 16 42 H 0.38 0.95 5.32 -74.06 -0.39 0.56 16 43 H -0.23 -0.14 5.34 99.48 0.53 0.39 16 44 H -0.25 -1.38 5.75 99.48 0.57 -0.81 16 45 H 0.09 -1.02 8.14 -2.39 -0.02 -1.04 16 46 H 0.10 -1.07 8.14 -2.39 -0.02 -1.09 16 47 H 0.09 -0.99 8.14 -2.39 -0.02 -1.01 16 48 H 0.07 -0.48 5.26 -2.39 -0.01 -0.49 16 Total: 0.00 -18.17 356.29 -3.75 -21.92 By element: Atomic # 1 Polarization: -10.04 SS G_CDS: -0.50 Total: -10.54 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: 3.34 Total: 1.73 kcal Atomic # 7 Polarization: 2.79 SS G_CDS: -0.93 Total: 1.86 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -5.59 Total: -31.76 kcal Atomic # 14 Polarization: 1.23 SS G_CDS: 1.55 Total: 2.78 kcal Atomic # 16 Polarization: 15.62 SS G_CDS: -1.62 Total: 14.00 kcal Total: -18.17 -3.75 -21.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10466082_15065288.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.923 kcal (2) G-P(sol) polarization free energy of solvation -18.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds