Wall clock time and date at job start Mon Mar 8 2021 09:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47195 * 2 1 4 4 H 1.09000 * 109.47380 * 305.00321 * 3 2 1 5 5 C 1.53001 * 109.46956 * 65.00009 * 3 2 1 6 6 C 1.53001 * 109.46956 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47597 * 299.99839 * 6 5 3 8 8 H 1.09000 * 109.47141 * 300.00619 * 7 6 5 9 9 N 1.46498 * 109.47566 * 180.02562 * 7 6 5 10 10 S 1.65599 * 119.99929 * 95.95442 * 9 7 6 11 11 O 1.42099 * 106.40409 * 178.18450 * 10 9 7 12 12 O 1.42102 * 106.40204 * 311.09758 * 10 9 7 13 13 C 1.76199 * 107.21850 * 64.63955 * 10 9 7 14 14 C 1.38211 * 119.99928 * 63.62220 * 13 10 9 15 15 C 1.50707 * 119.99740 * 359.97438 * 14 13 10 16 16 O 1.42897 * 109.47500 * 75.62793 * 15 14 13 17 17 Si 1.86306 * 109.46680 * 195.62448 * 15 14 13 18 18 C 1.38256 * 120.00331 * 179.80951 * 14 13 10 19 19 C 1.38216 * 119.99708 * 0.39515 * 18 14 13 20 20 C 1.38262 * 119.99606 * 359.85484 * 19 18 14 21 21 C 1.38209 * 120.00409 * 359.96108 * 20 19 18 22 22 C 1.53001 * 109.46836 * 60.00088 * 7 6 5 23 23 C 1.52997 * 109.47597 * 184.99848 * 3 2 1 24 24 H 1.08999 * 109.47276 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47138 * 299.99577 * 1 2 3 26 26 H 1.08996 * 109.46977 * 59.99749 * 1 2 3 27 27 H 1.08997 * 109.47423 * 239.99969 * 2 1 3 28 28 H 1.09005 * 109.47693 * 119.99924 * 2 1 3 29 29 H 1.08997 * 109.47644 * 300.00108 * 5 3 2 30 30 H 1.09000 * 109.47189 * 60.00368 * 5 3 2 31 31 H 1.09005 * 109.46887 * 179.97438 * 6 5 3 32 32 H 1.09000 * 109.47380 * 60.00312 * 6 5 3 33 33 H 0.96993 * 119.99846 * 275.95739 * 9 7 6 34 34 H 1.08997 * 109.47238 * 315.62201 * 15 14 13 35 35 H 0.96698 * 113.99864 * 65.24957 * 16 15 14 36 36 H 1.48496 * 109.99652 * 179.97438 * 17 15 14 37 37 H 1.48499 * 109.99948 * 301.31665 * 17 15 14 38 38 H 1.08000 * 120.00748 * 180.23439 * 18 14 13 39 39 H 1.07998 * 120.00380 * 179.84026 * 19 18 14 40 40 H 1.08005 * 119.99328 * 179.97438 * 20 19 18 41 41 H 1.08000 * 120.00347 * 179.97438 * 21 20 19 42 42 H 1.09001 * 109.47415 * 180.02562 * 22 7 6 43 43 H 1.09000 * 109.47189 * 59.99937 * 22 7 6 44 44 H 1.09000 * 109.47141 * 300.00619 * 23 3 2 45 45 H 1.09005 * 109.47044 * 60.00045 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6352 2.1265 1.3074 6 6 2.1457 3.5688 1.3076 7 6 3.6706 3.5702 1.1823 8 1 4.1048 3.0308 2.0241 9 7 4.1595 4.9512 1.1831 10 16 4.6924 5.6400 2.5917 11 8 5.1334 6.9486 2.2567 12 8 3.6919 5.3831 3.5675 13 6 6.1240 4.7472 3.0998 14 6 7.2586 4.7536 2.3107 15 6 7.2711 5.5237 1.0153 16 8 7.3934 6.9202 1.2924 17 14 8.7146 4.9682 -0.0234 18 6 8.3833 4.0564 2.7112 19 6 8.3702 3.3462 3.8969 20 6 7.2333 3.3356 4.6838 21 6 6.1103 4.0357 4.2851 22 6 4.0753 2.8862 -0.1251 23 6 3.5647 1.4444 -0.1257 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 0.5489 2.1252 1.3970 30 1 2.0698 1.5875 2.1492 31 1 1.8570 4.0563 2.2389 32 1 1.7115 4.1082 0.4659 33 1 4.1710 5.4621 0.3587 34 1 6.3426 5.3405 0.4746 35 1 8.2341 7.1680 1.7010 36 1 8.7378 5.7197 -1.3039 37 1 9.9846 5.1833 0.7155 38 1 9.2712 4.0644 2.0965 39 1 9.2478 2.7994 4.2086 40 1 7.2230 2.7803 5.6101 41 1 5.2222 4.0271 4.8996 42 1 5.1617 2.8867 -0.2143 43 1 3.6411 3.4255 -0.9669 44 1 3.9994 0.9053 0.7161 45 1 3.8532 0.9571 -1.0571 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_10466082_2726874.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:03:48 Heat of formation + Delta-G solvation = -89.246769 kcal Electronic energy + Delta-G solvation = -27585.687793 eV Core-core repulsion = 23889.020149 eV Total energy + Delta-G solvation = -3696.667645 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 326.138 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -40.76674 -40.21014 -38.28081 -37.48861 -36.64832 -36.44874 -33.16111 -32.81605 -32.45857 -31.77024 -28.87478 -27.02609 -24.61968 -24.44452 -23.56242 -22.84543 -21.82847 -21.07205 -20.36899 -19.19206 -18.32291 -18.07072 -17.63214 -16.92075 -16.64236 -16.08770 -15.97417 -15.91336 -15.66322 -15.33486 -15.12215 -15.06360 -14.56956 -14.37955 -14.20314 -14.15373 -13.93736 -13.53641 -13.34676 -13.13229 -12.96455 -12.84241 -12.82958 -12.69936 -12.43052 -12.38255 -12.31555 -12.12884 -12.01814 -11.71597 -11.58378 -11.44379 -11.24320 -11.05914 -10.75160 -10.52083 -10.37598 -10.13570 -5.12295 -0.57911 -0.27133 0.05666 1.05397 1.42404 1.80970 1.96924 2.35037 2.81117 3.21050 3.36794 3.48712 3.58402 3.62696 3.73493 3.77684 3.82002 3.96995 4.06066 4.09318 4.13310 4.22359 4.28234 4.34019 4.37129 4.44820 4.49974 4.51475 4.59871 4.68366 4.69054 4.71318 4.84368 4.92825 5.00666 5.02841 5.03771 5.11699 5.13887 5.17314 5.19313 5.23559 5.27669 5.36926 5.46868 5.53876 5.64683 5.93640 6.38594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.120 4.120 3 C -0.091 4.091 4 H 0.072 0.928 5 C -0.115 4.115 6 C -0.139 4.139 7 C 0.155 3.845 8 H 0.084 0.916 9 N -1.115 6.115 10 S 2.683 3.317 11 O -0.926 6.926 12 O -0.959 6.959 13 C -0.655 4.655 14 C -0.013 4.013 15 C -0.112 4.112 16 O -0.488 6.488 17 Si 0.693 3.307 18 C -0.145 4.145 19 C -0.058 4.058 20 C -0.134 4.134 21 C -0.022 4.022 22 C -0.127 4.127 23 C -0.113 4.113 24 H 0.052 0.948 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.419 0.581 34 H 0.118 0.882 35 H 0.371 0.629 36 H -0.249 1.249 37 H -0.255 1.255 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.136 0.864 41 H 0.145 0.855 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.065 0.935 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.259 -6.645 -1.952 7.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.158 4.158 3 C -0.110 4.110 4 H 0.090 0.910 5 C -0.153 4.153 6 C -0.178 4.178 7 C 0.048 3.952 8 H 0.102 0.898 9 N -0.875 5.875 10 S 2.772 3.228 11 O -0.916 6.916 12 O -0.949 6.949 13 C -0.741 4.741 14 C -0.015 4.015 15 C -0.222 4.222 16 O -0.293 6.293 17 Si 0.593 3.407 18 C -0.163 4.163 19 C -0.076 4.076 20 C -0.153 4.153 21 C -0.042 4.042 22 C -0.166 4.166 23 C -0.151 4.151 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.254 0.746 34 H 0.136 0.864 35 H 0.218 0.782 36 H -0.173 1.173 37 H -0.180 1.180 38 H 0.154 0.846 39 H 0.153 0.847 40 H 0.154 0.846 41 H 0.163 0.837 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.084 0.916 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.039 -5.777 -2.001 6.444 hybrid contribution 0.855 0.535 0.467 1.111 sum 2.894 -5.241 -1.534 6.181 Atomic orbital electron populations 1.21831 0.95843 1.01667 1.01979 1.21565 0.96014 0.96160 1.02023 1.21261 0.95315 0.96103 0.98313 0.90962 1.21626 1.01313 0.94827 0.97507 1.22086 0.94543 0.97621 1.03561 1.20839 0.94811 0.80126 0.99414 0.89831 1.55800 1.79755 1.24186 1.27755 1.02401 0.73683 0.73697 0.73051 1.93729 1.81759 1.33492 1.82629 1.93589 1.56302 1.85606 1.59374 1.30868 1.19225 1.18373 1.05657 1.19927 0.92650 0.93882 0.95018 1.25428 1.13454 0.85409 0.97935 1.86972 1.40747 1.18838 1.82729 0.94928 0.75650 0.90828 0.79274 1.21309 0.98165 0.98875 0.97999 1.21482 0.98080 0.95021 0.92999 1.21407 0.93217 1.00072 1.00577 1.21094 0.99065 0.90936 0.93059 1.21870 1.01511 0.96342 0.96864 1.21564 0.95349 0.95711 1.02514 0.92843 0.92412 0.92786 0.91991 0.91968 0.91145 0.91696 0.90363 0.91178 0.74599 0.86409 0.78225 1.17347 1.17957 0.84620 0.84702 0.84612 0.83685 0.90878 0.90904 0.91606 0.91250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.20 9.67 37.15 0.36 0.56 16 2 C -0.12 0.21 5.40 -26.73 -0.14 0.07 16 3 C -0.09 0.19 2.19 -90.62 -0.20 -0.01 16 4 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 5 C -0.11 0.15 4.96 -26.73 -0.13 0.02 16 6 C -0.14 0.09 5.53 -26.73 -0.15 -0.06 16 7 C 0.15 -0.23 2.66 -67.93 -0.18 -0.41 16 8 H 0.08 -0.14 7.83 -51.93 -0.41 -0.55 16 9 N -1.12 0.82 4.18 -4.89 -0.02 0.80 16 10 S 2.68 6.88 4.89 -107.50 -0.53 6.35 16 11 O -0.93 -5.29 15.02 -66.42 -1.00 -6.29 16 12 O -0.96 -4.77 16.34 -57.17 -0.93 -5.70 16 13 C -0.66 -0.86 5.72 -39.59 -0.23 -1.08 16 14 C -0.01 0.00 5.27 -104.62 -0.55 -0.56 16 15 C -0.11 0.00 1.88 36.01 0.07 0.07 16 16 O -0.49 -1.16 10.59 -57.76 -0.61 -1.77 16 17 Si 0.69 -1.21 30.20 -169.99 -5.13 -6.34 16 18 C -0.15 0.15 8.66 -39.58 -0.34 -0.19 16 19 C -0.06 0.09 10.05 -39.58 -0.40 -0.31 16 20 C -0.13 0.13 10.05 -39.58 -0.40 -0.27 16 21 C -0.02 -0.01 9.55 -39.59 -0.38 -0.39 16 22 C -0.13 0.39 5.46 -26.76 -0.15 0.24 16 23 C -0.11 0.32 5.20 -26.76 -0.14 0.18 16 24 H 0.05 -0.06 8.14 -51.93 -0.42 -0.49 16 25 H 0.06 -0.07 6.56 -51.93 -0.34 -0.41 16 26 H 0.05 -0.06 8.14 -51.93 -0.42 -0.49 16 27 H 0.06 -0.11 8.14 -51.93 -0.42 -0.53 16 28 H 0.06 -0.10 8.14 -51.93 -0.42 -0.52 16 29 H 0.07 -0.08 6.57 -51.93 -0.34 -0.42 16 30 H 0.06 -0.08 8.14 -51.93 -0.42 -0.51 16 31 H 0.08 0.09 7.74 -51.93 -0.40 -0.32 16 32 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 33 H 0.42 -0.99 8.52 -34.47 -0.29 -1.28 16 34 H 0.12 -0.16 5.79 -51.93 -0.30 -0.46 16 35 H 0.37 -0.24 8.60 45.56 0.39 0.15 16 36 H -0.25 -0.31 7.11 56.52 0.40 0.09 16 37 H -0.25 0.09 6.66 56.52 0.38 0.47 16 38 H 0.14 -0.36 4.87 -52.49 -0.26 -0.61 16 39 H 0.14 -0.54 8.06 -52.49 -0.42 -0.96 16 40 H 0.14 -0.42 8.06 -52.48 -0.42 -0.85 16 41 H 0.15 0.00 7.34 -52.49 -0.39 -0.38 16 42 H 0.07 -0.30 8.14 -51.93 -0.42 -0.72 16 43 H 0.07 -0.24 8.14 -51.93 -0.42 -0.66 16 44 H 0.07 -0.18 8.14 -51.93 -0.42 -0.61 16 45 H 0.07 -0.21 8.14 -51.93 -0.42 -0.64 16 LS Contribution 356.72 15.07 5.38 5.38 Total: 0.00 -8.59 356.72 -12.86 -21.44 By element: Atomic # 1 Polarization: -4.68 SS G_CDS: -7.05 Total: -11.73 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -2.96 Total: -2.14 kcal Atomic # 7 Polarization: 0.82 SS G_CDS: -0.02 Total: 0.80 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: -2.54 Total: -13.76 kcal Atomic # 14 Polarization: -1.21 SS G_CDS: -5.13 Total: -6.34 kcal Atomic # 16 Polarization: 6.88 SS G_CDS: -0.53 Total: 6.35 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -8.59 -12.86 -21.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10466082_2726874.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.803 kcal (2) G-P(sol) polarization free energy of solvation -8.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds