Wall clock time and date at job start Mon Mar 8 2021 09:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47195 * 2 1 4 4 H 1.09000 * 109.47380 * 305.00321 * 3 2 1 5 5 C 1.53001 * 109.46956 * 65.00009 * 3 2 1 6 6 C 1.53001 * 109.46956 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47597 * 299.99839 * 6 5 3 8 8 H 1.09000 * 109.47141 * 300.00619 * 7 6 5 9 9 N 1.46498 * 109.47566 * 180.02562 * 7 6 5 10 10 S 1.65599 * 119.99929 * 95.95442 * 9 7 6 11 11 O 1.42099 * 106.40409 * 178.18450 * 10 9 7 12 12 O 1.42102 * 106.40204 * 311.09758 * 10 9 7 13 13 C 1.76199 * 107.21850 * 64.63955 * 10 9 7 14 14 C 1.38211 * 119.99928 * 63.62220 * 13 10 9 15 15 C 1.50707 * 119.99740 * 359.97438 * 14 13 10 16 16 O 1.42897 * 109.47500 * 75.62793 * 15 14 13 17 17 Si 1.86306 * 109.46680 * 195.62448 * 15 14 13 18 18 C 1.38256 * 120.00331 * 179.80951 * 14 13 10 19 19 C 1.38216 * 119.99708 * 0.39515 * 18 14 13 20 20 C 1.38262 * 119.99606 * 359.85484 * 19 18 14 21 21 C 1.38209 * 120.00409 * 359.96108 * 20 19 18 22 22 C 1.53001 * 109.46836 * 60.00088 * 7 6 5 23 23 C 1.52997 * 109.47597 * 184.99848 * 3 2 1 24 24 H 1.08999 * 109.47276 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47138 * 299.99577 * 1 2 3 26 26 H 1.08996 * 109.46977 * 59.99749 * 1 2 3 27 27 H 1.08997 * 109.47423 * 239.99969 * 2 1 3 28 28 H 1.09005 * 109.47693 * 119.99924 * 2 1 3 29 29 H 1.08997 * 109.47644 * 300.00108 * 5 3 2 30 30 H 1.09000 * 109.47189 * 60.00368 * 5 3 2 31 31 H 1.09005 * 109.46887 * 179.97438 * 6 5 3 32 32 H 1.09000 * 109.47380 * 60.00312 * 6 5 3 33 33 H 0.96993 * 119.99846 * 275.95739 * 9 7 6 34 34 H 1.08997 * 109.47238 * 315.62201 * 15 14 13 35 35 H 0.96698 * 113.99864 * 65.24957 * 16 15 14 36 36 H 1.48496 * 109.99652 * 179.97438 * 17 15 14 37 37 H 1.48499 * 109.99948 * 301.31665 * 17 15 14 38 38 H 1.08000 * 120.00748 * 180.23439 * 18 14 13 39 39 H 1.07998 * 120.00380 * 179.84026 * 19 18 14 40 40 H 1.08005 * 119.99328 * 179.97438 * 20 19 18 41 41 H 1.08000 * 120.00347 * 179.97438 * 21 20 19 42 42 H 1.09001 * 109.47415 * 180.02562 * 22 7 6 43 43 H 1.09000 * 109.47189 * 59.99937 * 22 7 6 44 44 H 1.09000 * 109.47141 * 300.00619 * 23 3 2 45 45 H 1.09005 * 109.47044 * 60.00045 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6352 2.1265 1.3074 6 6 2.1457 3.5688 1.3076 7 6 3.6706 3.5702 1.1823 8 1 4.1048 3.0308 2.0241 9 7 4.1595 4.9512 1.1831 10 16 4.6924 5.6400 2.5917 11 8 5.1334 6.9486 2.2567 12 8 3.6919 5.3831 3.5675 13 6 6.1240 4.7472 3.0998 14 6 7.2586 4.7536 2.3107 15 6 7.2711 5.5237 1.0153 16 8 7.3934 6.9202 1.2924 17 14 8.7146 4.9682 -0.0234 18 6 8.3833 4.0564 2.7112 19 6 8.3702 3.3462 3.8969 20 6 7.2333 3.3356 4.6838 21 6 6.1103 4.0357 4.2851 22 6 4.0753 2.8862 -0.1251 23 6 3.5647 1.4444 -0.1257 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 0.5489 2.1252 1.3970 30 1 2.0698 1.5875 2.1492 31 1 1.8570 4.0563 2.2389 32 1 1.7115 4.1082 0.4659 33 1 4.1710 5.4621 0.3587 34 1 6.3426 5.3405 0.4746 35 1 8.2341 7.1680 1.7010 36 1 8.7378 5.7197 -1.3039 37 1 9.9846 5.1833 0.7155 38 1 9.2712 4.0644 2.0965 39 1 9.2478 2.7994 4.2086 40 1 7.2230 2.7803 5.6101 41 1 5.2222 4.0271 4.8996 42 1 5.1617 2.8867 -0.2143 43 1 3.6411 3.4255 -0.9669 44 1 3.9994 0.9053 0.7161 45 1 3.8532 0.9571 -1.0571 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10466082_2726874.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:03:47 Heat of formation + Delta-G solvation = -87.627660 kcal Electronic energy + Delta-G solvation = -27585.617583 eV Core-core repulsion = 23889.020149 eV Total energy + Delta-G solvation = -3696.597435 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 326.138 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.70714 -40.09918 -38.48648 -37.59090 -36.95055 -36.38909 -33.09173 -32.75795 -32.39981 -31.64865 -28.77943 -26.98210 -24.53925 -24.37919 -23.43726 -22.79654 -21.71436 -21.01253 -20.40674 -19.22464 -18.44062 -18.11794 -17.63547 -16.87649 -16.61428 -16.15398 -15.90914 -15.85639 -15.58584 -15.34565 -15.04241 -15.01813 -14.43389 -14.32874 -14.18403 -14.06900 -13.90580 -13.48944 -13.33921 -13.23123 -13.11802 -12.97243 -12.84864 -12.78686 -12.35986 -12.33947 -12.28223 -11.99522 -11.96733 -11.60348 -11.56559 -11.30926 -11.12049 -10.96947 -10.73443 -10.46432 -10.32238 -10.07468 -4.98596 -0.69246 -0.28085 0.12574 1.15700 1.53927 1.89954 1.92320 2.39560 2.67507 3.23299 3.41980 3.46126 3.70131 3.75816 3.82640 3.86092 3.97326 4.10425 4.15016 4.20481 4.25585 4.32989 4.36750 4.42376 4.49114 4.57350 4.57960 4.65357 4.72833 4.78691 4.79168 4.83289 4.97096 4.99271 5.13359 5.16141 5.21832 5.24796 5.28663 5.29320 5.30526 5.33937 5.38875 5.47954 5.58836 5.68084 5.75232 6.02330 6.46357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.118 4.118 3 C -0.088 4.088 4 H 0.070 0.930 5 C -0.113 4.113 6 C -0.140 4.140 7 C 0.153 3.847 8 H 0.086 0.914 9 N -1.105 6.105 10 S 2.690 3.310 11 O -0.965 6.965 12 O -0.993 6.993 13 C -0.664 4.664 14 C -0.019 4.019 15 C -0.136 4.136 16 O -0.516 6.516 17 Si 0.788 3.212 18 C -0.147 4.147 19 C -0.053 4.053 20 C -0.135 4.135 21 C -0.040 4.040 22 C -0.124 4.124 23 C -0.111 4.111 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.426 0.574 34 H 0.124 0.876 35 H 0.379 0.621 36 H -0.293 1.293 37 H -0.267 1.267 38 H 0.155 0.845 39 H 0.165 0.835 40 H 0.158 0.842 41 H 0.141 0.859 42 H 0.090 0.910 43 H 0.077 0.923 44 H 0.068 0.932 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.986 -8.345 -2.414 9.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.156 4.156 3 C -0.107 4.107 4 H 0.088 0.912 5 C -0.151 4.151 6 C -0.180 4.180 7 C 0.046 3.954 8 H 0.104 0.896 9 N -0.867 5.867 10 S 2.782 3.218 11 O -0.955 6.955 12 O -0.983 6.983 13 C -0.753 4.753 14 C -0.021 4.021 15 C -0.244 4.244 16 O -0.323 6.323 17 Si 0.690 3.310 18 C -0.165 4.165 19 C -0.071 4.071 20 C -0.154 4.154 21 C -0.059 4.059 22 C -0.163 4.163 23 C -0.149 4.149 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.264 0.736 34 H 0.141 0.859 35 H 0.228 0.772 36 H -0.221 1.221 37 H -0.193 1.193 38 H 0.172 0.828 39 H 0.183 0.817 40 H 0.175 0.825 41 H 0.159 0.841 42 H 0.108 0.892 43 H 0.096 0.904 44 H 0.087 0.913 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.720 -7.462 -2.450 8.691 hybrid contribution 0.306 1.051 0.628 1.262 sum 4.026 -6.412 -1.822 7.787 Atomic orbital electron populations 1.21845 0.96365 1.01521 1.01755 1.21552 0.95552 0.96285 1.02195 1.21227 0.96134 0.95771 0.97536 0.91150 1.21604 1.01007 0.94332 0.98128 1.22083 0.95460 0.98008 1.02430 1.20963 0.94063 0.79598 1.00729 0.89639 1.55513 1.79549 1.24617 1.26990 1.01763 0.73691 0.73272 0.73090 1.93675 1.82379 1.36171 1.83264 1.93540 1.57889 1.86026 1.60844 1.30543 1.18842 1.19296 1.06639 1.20001 0.92803 0.94238 0.95019 1.25896 1.15434 0.84465 0.98558 1.86938 1.41829 1.20452 1.83086 0.93937 0.72977 0.88910 0.75200 1.21568 0.98105 0.98296 0.98511 1.21881 0.98703 0.94256 0.92262 1.21705 0.92724 0.99550 1.01437 1.21225 0.99918 0.91724 0.93032 1.21887 1.02665 0.96025 0.95731 1.21563 0.94458 0.95797 1.03119 0.92937 0.92754 0.92919 0.91565 0.91982 0.91621 0.91783 0.92648 0.90970 0.73647 0.85857 0.77249 1.22091 1.19319 0.82759 0.81701 0.82481 0.84120 0.89165 0.90383 0.91350 0.90287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.36 9.67 71.98 0.70 1.06 16 2 C -0.12 0.44 5.40 30.59 0.17 0.61 16 3 C -0.09 0.37 2.19 -10.79 -0.02 0.35 16 4 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 5 C -0.11 0.21 4.96 30.60 0.15 0.36 16 6 C -0.14 -0.01 5.53 30.59 0.17 0.15 16 7 C 0.15 -0.37 2.66 44.99 0.12 -0.25 16 8 H 0.09 -0.23 7.83 -2.39 -0.02 -0.25 16 9 N -1.10 0.27 4.18 -169.39 -0.71 -0.43 16 10 S 2.69 19.28 4.89 -56.49 -0.28 19.01 16 11 O -0.96 -13.39 15.02 -119.16 -1.79 -15.18 16 12 O -0.99 -12.61 16.34 -128.00 -2.09 -14.70 16 13 C -0.66 -2.28 5.72 22.27 0.13 -2.15 16 14 C -0.02 0.00 5.27 -19.86 -0.10 -0.11 16 15 C -0.14 -0.01 1.88 71.24 0.13 0.12 16 16 O -0.52 -3.04 10.59 -127.44 -1.35 -4.39 16 17 Si 0.79 -3.50 30.20 68.60 2.07 -1.43 16 18 C -0.15 0.55 8.66 22.27 0.19 0.75 16 19 C -0.05 0.29 10.05 22.27 0.22 0.51 16 20 C -0.14 0.43 10.05 22.27 0.22 0.65 16 21 C -0.04 -0.07 9.55 22.27 0.21 0.15 16 22 C -0.12 0.85 5.46 30.58 0.17 1.02 16 23 C -0.11 0.74 5.20 30.58 0.16 0.89 16 24 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 25 H 0.05 -0.09 6.56 -2.39 -0.02 -0.11 16 26 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 27 H 0.07 -0.29 8.14 -2.39 -0.02 -0.30 16 28 H 0.06 -0.22 8.14 -2.38 -0.02 -0.24 16 29 H 0.07 -0.07 6.57 -2.39 -0.02 -0.08 16 30 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 31 H 0.05 0.26 7.74 -2.38 -0.02 0.25 16 32 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 33 H 0.43 -1.54 8.52 -96.75 -0.82 -2.36 16 34 H 0.12 -0.28 5.79 -2.39 -0.01 -0.29 16 35 H 0.38 -0.10 8.60 -74.06 -0.64 -0.74 16 36 H -0.29 -0.84 7.11 99.48 0.71 -0.13 16 37 H -0.27 0.66 6.66 99.48 0.66 1.33 16 38 H 0.16 -1.21 4.87 -2.91 -0.01 -1.22 16 39 H 0.17 -1.90 8.06 -2.91 -0.02 -1.92 16 40 H 0.16 -1.25 8.06 -2.91 -0.02 -1.28 16 41 H 0.14 0.24 7.34 -2.91 -0.02 0.22 16 42 H 0.09 -0.89 8.14 -2.39 -0.02 -0.91 16 43 H 0.08 -0.59 8.14 -2.39 -0.02 -0.61 16 44 H 0.07 -0.46 8.14 -2.39 -0.02 -0.48 16 45 H 0.08 -0.62 8.14 -2.38 -0.02 -0.64 16 Total: 0.00 -21.51 356.72 -2.00 -23.51 By element: Atomic # 1 Polarization: -10.04 SS G_CDS: -0.47 Total: -10.51 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: 2.61 Total: 4.12 kcal Atomic # 7 Polarization: 0.27 SS G_CDS: -0.71 Total: -0.43 kcal Atomic # 8 Polarization: -29.04 SS G_CDS: -5.23 Total: -34.27 kcal Atomic # 14 Polarization: -3.50 SS G_CDS: 2.07 Total: -1.43 kcal Atomic # 16 Polarization: 19.28 SS G_CDS: -0.28 Total: 19.01 kcal Total: -21.51 -2.00 -23.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10466082_2726874.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.119 kcal (2) G-P(sol) polarization free energy of solvation -21.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds