Wall clock time and date at job start Mon Mar 8 2021 09:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86305 * 109.47068 * 2 1 4 4 C 1.50701 * 109.47012 * 119.99775 * 2 1 3 5 5 C 1.38236 * 120.00003 * 65.00451 * 4 2 1 6 6 C 1.38240 * 119.99895 * 179.97438 * 5 4 2 7 7 C 1.38234 * 119.99714 * 359.97004 * 6 5 4 8 8 S 1.76202 * 119.99373 * 180.02562 * 7 6 5 9 9 O 1.42097 * 106.40342 * 336.46045 * 8 7 6 10 10 O 1.42102 * 106.39885 * 203.54036 * 8 7 6 11 11 N 1.65598 * 107.21824 * 90.00385 * 8 7 6 12 12 C 1.46503 * 120.00338 * 64.99855 * 11 8 7 13 13 H 1.09005 * 112.84590 * 13.79867 * 12 11 8 14 14 C 1.53775 * 113.61436 * 145.00030 * 12 11 8 15 15 C 1.53782 * 87.08074 * 89.20067 * 14 12 11 16 16 H 1.08999 * 113.61594 * 270.79485 * 15 14 12 17 17 C 1.50706 * 113.61290 * 139.97692 * 15 14 12 18 18 C 1.38244 * 119.97491 * 299.72465 * 17 15 14 19 19 C 1.38201 * 120.02142 * 179.72306 * 18 17 15 20 20 C 1.38459 * 119.97601 * 0.57371 * 19 18 17 21 21 F 1.35094 * 120.02797 * 179.67746 * 20 19 18 22 22 C 1.38461 * 119.94519 * 359.70287 * 20 19 18 23 23 C 1.38193 * 119.98059 * 359.97438 * 22 20 19 24 24 C 1.53776 * 87.08086 * 25.43231 * 15 14 12 25 25 C 1.38227 * 120.00355 * 0.27945 * 7 6 5 26 26 C 1.38232 * 120.00173 * 359.53618 * 25 7 6 27 27 H 0.96702 * 113.99955 * 300.00349 * 1 2 3 28 28 H 1.08996 * 109.47552 * 239.99992 * 2 1 3 29 29 H 1.48504 * 109.99650 * 178.68137 * 3 2 1 30 30 H 1.48503 * 109.99798 * 299.99749 * 3 2 1 31 31 H 1.07999 * 120.00002 * 359.97438 * 5 4 2 32 32 H 1.07998 * 119.99677 * 179.97438 * 6 5 4 33 33 H 0.97000 * 120.00002 * 245.00031 * 11 8 7 34 34 H 1.08999 * 113.61967 * 334.64943 * 14 12 11 35 35 H 1.09005 * 113.61453 * 203.74508 * 14 12 11 36 36 H 1.08000 * 119.98716 * 359.97438 * 18 17 15 37 37 H 1.07996 * 120.01399 * 180.25476 * 19 18 17 38 38 H 1.08009 * 120.01016 * 180.02562 * 22 20 19 39 39 H 1.07999 * 119.99486 * 179.97438 * 23 22 20 40 40 H 1.08996 * 113.61717 * 89.11760 * 24 15 14 41 41 H 1.09006 * 113.61383 * 220.01884 * 24 15 14 42 42 H 1.08001 * 120.00360 * 179.72011 * 25 7 6 43 43 H 1.08000 * 120.00266 * 180.23313 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.6847 -2.0602 1.3984 6 6 2.1459 -2.7119 2.5269 7 6 2.8542 -2.0139 3.4871 8 16 3.4427 -2.8448 4.9252 9 8 2.6133 -3.9858 5.0970 10 8 3.6101 -1.8481 5.9241 11 7 4.9573 -3.4159 4.5760 12 6 6.0504 -2.4778 4.3089 13 1 5.8109 -1.4550 4.5998 14 6 7.4165 -2.9610 4.8238 15 6 7.6011 -3.6445 3.4587 16 1 7.2135 -4.6626 3.4241 17 6 9.0011 -3.5325 2.9119 18 6 9.5481 -2.2874 2.6637 19 6 10.8338 -2.1834 2.1678 20 6 11.5698 -3.3271 1.9082 21 9 12.8243 -3.2268 1.4172 22 6 11.0187 -4.5737 2.1518 23 6 9.7353 -4.6752 2.6541 24 6 6.6320 -2.5946 2.8901 25 6 3.0963 -0.6631 3.3217 26 6 2.6384 -0.0121 2.1915 27 1 -0.3933 0.4418 0.7650 28 1 1.7923 -0.5138 -0.8899 29 1 3.5346 1.7703 0.0321 30 1 1.5614 2.4679 -1.2086 31 1 1.1318 -2.6055 0.6480 32 1 1.9530 -3.7663 2.6583 33 1 5.1208 -4.3717 4.5483 34 1 7.3467 -3.6608 5.6566 35 1 8.1248 -2.1530 5.0069 36 1 8.9719 -1.3955 2.8613 37 1 11.2625 -1.2105 1.9778 38 1 11.5920 -5.4666 1.9501 39 1 9.3050 -5.6474 2.8438 40 1 7.1258 -1.6864 2.5446 41 1 5.9288 -2.9985 2.1618 42 1 3.6458 -0.1168 4.0741 43 1 2.8308 1.0425 2.0604 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_10466354_13421422.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:12:35 Heat of formation + Delta-G solvation = -65.266011 kcal Electronic energy + Delta-G solvation = -29750.102897 eV Core-core repulsion = 25383.191837 eV Total energy + Delta-G solvation = -4366.911060 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.098 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -49.82881 -41.38757 -40.79014 -39.20136 -38.27685 -37.82199 -36.91672 -34.36200 -33.11037 -32.31411 -32.22524 -31.18850 -27.34934 -26.89538 -26.08539 -24.22958 -24.15726 -23.08921 -22.82188 -21.01442 -20.40860 -19.39470 -18.85568 -18.62522 -18.22629 -17.45468 -17.33896 -16.91334 -16.85499 -16.60352 -16.53644 -16.14327 -15.91333 -15.66705 -15.61045 -15.22502 -14.89346 -14.67746 -14.57400 -14.44893 -14.24052 -14.10442 -13.96149 -13.88207 -13.72543 -13.25719 -13.16593 -13.10064 -12.99867 -12.73357 -12.48310 -12.31898 -12.07616 -12.01005 -11.93150 -11.80891 -11.42727 -10.72943 -10.71201 -10.44189 -10.25462 -10.16588 -9.54383 -5.19476 -0.79018 -0.43596 0.06449 0.08207 0.17135 1.08081 1.46574 1.77144 1.81976 2.23914 2.46696 2.67630 3.14722 3.22369 3.24487 3.26696 3.37159 3.41804 3.46189 3.63254 3.65842 3.68142 3.74939 3.85796 3.94001 4.00529 4.04444 4.16593 4.20946 4.25414 4.30345 4.45170 4.48477 4.53261 4.70060 4.72514 4.76221 4.82945 4.83436 4.86780 4.87856 4.95571 5.09256 5.13719 5.15125 5.22238 5.46791 5.58336 5.75962 5.83857 6.35694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.535 6.535 2 C -0.078 4.078 3 Si 0.688 3.312 4 C -0.063 4.063 5 C -0.114 4.114 6 C -0.016 4.016 7 C -0.673 4.673 8 S 2.696 3.304 9 O -0.953 6.953 10 O -0.950 6.950 11 N -1.097 6.097 12 C 0.123 3.877 13 H 0.109 0.891 14 C -0.133 4.133 15 C -0.072 4.072 16 H 0.101 0.899 17 C -0.082 4.082 18 C -0.089 4.089 19 C -0.151 4.151 20 C 0.094 3.906 21 F -0.140 7.140 22 C -0.151 4.151 23 C -0.086 4.086 24 C -0.150 4.150 25 C -0.015 4.015 26 C -0.137 4.137 27 H 0.381 0.619 28 H 0.119 0.881 29 H -0.254 1.254 30 H -0.251 1.251 31 H 0.136 0.864 32 H 0.143 0.857 33 H 0.420 0.580 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.134 0.866 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.132 0.868 40 H 0.098 0.902 41 H 0.079 0.921 42 H 0.145 0.855 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.399 1.788 -0.550 1.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.341 6.341 2 C -0.188 4.188 3 Si 0.589 3.411 4 C -0.063 4.063 5 C -0.132 4.132 6 C -0.035 4.035 7 C -0.760 4.760 8 S 2.785 3.215 9 O -0.944 6.944 10 O -0.940 6.940 11 N -0.856 5.856 12 C 0.015 3.985 13 H 0.127 0.873 14 C -0.172 4.172 15 C -0.091 4.091 16 H 0.120 0.880 17 C -0.083 4.083 18 C -0.107 4.107 19 C -0.169 4.169 20 C 0.075 3.925 21 F -0.118 7.118 22 C -0.170 4.170 23 C -0.104 4.104 24 C -0.189 4.189 25 C -0.034 4.034 26 C -0.155 4.155 27 H 0.229 0.771 28 H 0.136 0.864 29 H -0.179 1.179 30 H -0.176 1.176 31 H 0.154 0.846 32 H 0.161 0.839 33 H 0.256 0.744 34 H 0.101 0.899 35 H 0.118 0.882 36 H 0.151 0.849 37 H 0.154 0.846 38 H 0.154 0.846 39 H 0.150 0.850 40 H 0.116 0.884 41 H 0.098 0.902 42 H 0.163 0.837 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.528 2.181 -0.753 2.367 hybrid contribution 0.514 -0.854 -1.156 1.527 sum 1.042 1.327 -1.909 2.548 Atomic orbital electron populations 1.86540 1.16495 1.81701 1.49326 1.25224 0.85724 1.10586 0.97297 0.94672 0.81165 0.77570 0.87653 1.20750 0.94911 0.94931 0.95747 1.21194 0.99855 0.94008 0.98185 1.20995 0.91242 1.00112 0.91188 1.30976 1.16102 1.06379 1.22530 1.01922 0.72168 0.73611 0.73779 1.93627 1.65503 1.49931 1.85301 1.93619 1.85378 1.60829 1.54162 1.55363 1.25130 1.16649 1.88420 1.21689 0.87352 0.93050 0.96442 0.87305 1.23421 0.95741 1.01228 0.96797 1.21557 0.91242 0.99988 0.96286 0.88033 1.19761 0.95922 0.92997 0.99588 1.20877 0.94202 0.97664 0.97925 1.21184 0.95385 0.98013 1.02360 1.17781 0.80512 0.94668 0.99539 1.91521 1.37982 1.97051 1.85278 1.21204 0.96924 0.96555 1.02290 1.20948 0.93213 0.98752 0.97521 1.23652 0.98496 0.99874 0.96868 1.20898 0.94227 0.92058 0.96209 1.21137 1.00012 0.99826 0.94542 0.77097 0.86382 1.17912 1.17557 0.84576 0.83926 0.74431 0.89889 0.88222 0.84856 0.84633 0.84643 0.84980 0.88390 0.90227 0.83714 0.84566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.49 12.83 -35.23 -0.45 0.04 16 2 C -0.08 0.13 2.80 36.01 0.10 0.23 16 3 Si 0.69 -1.64 29.80 -169.99 -5.07 -6.71 16 4 C -0.06 0.08 5.35 -104.62 -0.56 -0.48 16 5 C -0.11 0.09 9.69 -39.58 -0.38 -0.30 16 6 C -0.02 0.01 9.52 -39.58 -0.38 -0.37 16 7 C -0.67 0.47 5.95 -39.59 -0.24 0.24 16 8 S 2.70 0.03 5.71 -107.50 -0.61 -0.58 16 9 O -0.95 -2.93 17.28 -57.17 -0.99 -3.92 16 10 O -0.95 -2.59 16.80 -57.17 -0.96 -3.55 16 11 N -1.10 3.17 5.73 -4.20 -0.02 3.15 16 12 C 0.12 -0.43 4.50 -67.12 -0.30 -0.73 16 13 H 0.11 -0.45 7.77 -51.93 -0.40 -0.85 16 14 C -0.13 0.48 7.33 -25.92 -0.19 0.29 16 15 C -0.07 0.25 3.81 -90.96 -0.35 -0.09 16 16 H 0.10 -0.43 8.07 -51.93 -0.42 -0.84 16 17 C -0.08 0.15 5.29 -104.61 -0.55 -0.41 16 18 C -0.09 0.15 8.62 -39.59 -0.34 -0.19 16 19 C -0.15 0.04 10.03 -39.51 -0.40 -0.36 16 20 C 0.09 0.12 7.30 -39.42 -0.29 -0.17 16 21 F -0.14 -0.40 17.27 2.25 0.04 -0.37 16 22 C -0.15 0.00 10.03 -39.52 -0.40 -0.40 16 23 C -0.09 0.11 9.71 -39.59 -0.38 -0.28 16 24 C -0.15 0.58 7.25 -25.92 -0.19 0.39 16 25 C -0.01 0.02 9.52 -39.59 -0.38 -0.35 16 26 C -0.14 0.28 8.67 -39.58 -0.34 -0.07 16 27 H 0.38 -1.78 8.70 45.56 0.40 -1.38 16 28 H 0.12 -0.17 7.96 -51.93 -0.41 -0.59 16 29 H -0.25 0.10 7.11 56.52 0.40 0.50 16 30 H -0.25 -0.27 7.11 56.52 0.40 0.13 16 31 H 0.14 -0.21 8.06 -52.49 -0.42 -0.63 16 32 H 0.14 -0.24 7.62 -52.49 -0.40 -0.64 16 33 H 0.42 -1.87 8.80 -34.47 -0.30 -2.17 16 34 H 0.08 -0.28 8.14 -51.93 -0.42 -0.71 16 35 H 0.10 -0.39 7.73 -51.93 -0.40 -0.80 16 36 H 0.13 -0.51 6.64 -52.49 -0.35 -0.86 16 37 H 0.14 -0.21 8.06 -52.49 -0.42 -0.63 16 38 H 0.14 -0.16 8.06 -52.48 -0.42 -0.58 16 39 H 0.13 -0.41 8.05 -52.49 -0.42 -0.83 16 40 H 0.10 -0.44 6.29 -51.93 -0.33 -0.77 16 41 H 0.08 -0.28 8.14 -51.93 -0.42 -0.70 16 42 H 0.15 -0.46 7.61 -52.49 -0.40 -0.86 16 43 H 0.14 -0.58 4.91 -52.49 -0.26 -0.83 16 LS Contribution 375.61 15.07 5.66 5.66 Total: 0.00 -10.39 375.61 -12.98 -23.37 By element: Atomic # 1 Polarization: -9.02 SS G_CDS: -5.01 Total: -14.03 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -5.56 Total: -3.05 kcal Atomic # 7 Polarization: 3.17 SS G_CDS: -0.02 Total: 3.15 kcal Atomic # 8 Polarization: -5.03 SS G_CDS: -2.40 Total: -7.44 kcal Atomic # 9 Polarization: -0.40 SS G_CDS: 0.04 Total: -0.37 kcal Atomic # 14 Polarization: -1.64 SS G_CDS: -5.07 Total: -6.71 kcal Atomic # 16 Polarization: 0.03 SS G_CDS: -0.61 Total: -0.58 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -10.39 -12.98 -23.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10466354_13421422.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.899 kcal (2) G-P(sol) polarization free energy of solvation -10.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds