Wall clock time and date at job start Mon Mar 8 2021 09:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86305 * 109.47068 * 2 1 4 4 C 1.50701 * 109.47012 * 119.99775 * 2 1 3 5 5 C 1.38236 * 120.00003 * 65.00451 * 4 2 1 6 6 C 1.38240 * 119.99895 * 179.97438 * 5 4 2 7 7 C 1.38234 * 119.99714 * 359.97004 * 6 5 4 8 8 S 1.76202 * 119.99373 * 180.02562 * 7 6 5 9 9 O 1.42097 * 106.40342 * 336.46045 * 8 7 6 10 10 O 1.42102 * 106.39885 * 203.54036 * 8 7 6 11 11 N 1.65598 * 107.21824 * 90.00385 * 8 7 6 12 12 C 1.46503 * 120.00338 * 64.99855 * 11 8 7 13 13 H 1.09005 * 112.84590 * 13.79867 * 12 11 8 14 14 C 1.53775 * 113.61436 * 145.00030 * 12 11 8 15 15 C 1.53782 * 87.08074 * 89.20067 * 14 12 11 16 16 H 1.08999 * 113.61594 * 270.79485 * 15 14 12 17 17 C 1.50706 * 113.61290 * 139.97692 * 15 14 12 18 18 C 1.38244 * 119.97491 * 299.72465 * 17 15 14 19 19 C 1.38201 * 120.02142 * 179.72306 * 18 17 15 20 20 C 1.38459 * 119.97601 * 0.57371 * 19 18 17 21 21 F 1.35094 * 120.02797 * 179.67746 * 20 19 18 22 22 C 1.38461 * 119.94519 * 359.70287 * 20 19 18 23 23 C 1.38193 * 119.98059 * 359.97438 * 22 20 19 24 24 C 1.53776 * 87.08086 * 25.43231 * 15 14 12 25 25 C 1.38227 * 120.00355 * 0.27945 * 7 6 5 26 26 C 1.38232 * 120.00173 * 359.53618 * 25 7 6 27 27 H 0.96702 * 113.99955 * 300.00349 * 1 2 3 28 28 H 1.08996 * 109.47552 * 239.99992 * 2 1 3 29 29 H 1.48504 * 109.99650 * 178.68137 * 3 2 1 30 30 H 1.48503 * 109.99798 * 299.99749 * 3 2 1 31 31 H 1.07999 * 120.00002 * 359.97438 * 5 4 2 32 32 H 1.07998 * 119.99677 * 179.97438 * 6 5 4 33 33 H 0.97000 * 120.00002 * 245.00031 * 11 8 7 34 34 H 1.08999 * 113.61967 * 334.64943 * 14 12 11 35 35 H 1.09005 * 113.61453 * 203.74508 * 14 12 11 36 36 H 1.08000 * 119.98716 * 359.97438 * 18 17 15 37 37 H 1.07996 * 120.01399 * 180.25476 * 19 18 17 38 38 H 1.08009 * 120.01016 * 180.02562 * 22 20 19 39 39 H 1.07999 * 119.99486 * 179.97438 * 23 22 20 40 40 H 1.08996 * 113.61717 * 89.11760 * 24 15 14 41 41 H 1.09006 * 113.61383 * 220.01884 * 24 15 14 42 42 H 1.08001 * 120.00360 * 179.72011 * 25 7 6 43 43 H 1.08000 * 120.00266 * 180.23313 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.6847 -2.0602 1.3984 6 6 2.1459 -2.7119 2.5269 7 6 2.8542 -2.0139 3.4871 8 16 3.4427 -2.8448 4.9252 9 8 2.6133 -3.9858 5.0970 10 8 3.6101 -1.8481 5.9241 11 7 4.9573 -3.4159 4.5760 12 6 6.0504 -2.4778 4.3089 13 1 5.8109 -1.4550 4.5998 14 6 7.4165 -2.9610 4.8238 15 6 7.6011 -3.6445 3.4587 16 1 7.2135 -4.6626 3.4241 17 6 9.0011 -3.5325 2.9119 18 6 9.5481 -2.2874 2.6637 19 6 10.8338 -2.1834 2.1678 20 6 11.5698 -3.3271 1.9082 21 9 12.8243 -3.2268 1.4172 22 6 11.0187 -4.5737 2.1518 23 6 9.7353 -4.6752 2.6541 24 6 6.6320 -2.5946 2.8901 25 6 3.0963 -0.6631 3.3217 26 6 2.6384 -0.0121 2.1915 27 1 -0.3933 0.4418 0.7650 28 1 1.7923 -0.5138 -0.8899 29 1 3.5346 1.7703 0.0321 30 1 1.5614 2.4679 -1.2086 31 1 1.1318 -2.6055 0.6480 32 1 1.9530 -3.7663 2.6583 33 1 5.1208 -4.3717 4.5483 34 1 7.3467 -3.6608 5.6566 35 1 8.1248 -2.1530 5.0069 36 1 8.9719 -1.3955 2.8613 37 1 11.2625 -1.2105 1.9778 38 1 11.5920 -5.4666 1.9501 39 1 9.3050 -5.6474 2.8438 40 1 7.1258 -1.6864 2.5446 41 1 5.9288 -2.9985 2.1618 42 1 3.6458 -0.1168 4.0741 43 1 2.8308 1.0425 2.0604 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10466354_13421422.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:12:34 Heat of formation + Delta-G solvation = -65.518026 kcal Electronic energy + Delta-G solvation = -29750.113825 eV Core-core repulsion = 25383.191837 eV Total energy + Delta-G solvation = -4366.921989 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.098 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -49.92223 -41.16714 -40.65556 -39.04812 -38.36725 -37.69882 -37.02008 -34.18824 -32.99346 -32.17573 -32.11492 -31.05908 -27.22643 -26.58670 -25.88733 -24.10016 -24.03502 -22.97504 -22.68951 -20.89788 -20.21555 -19.27935 -18.79411 -18.59164 -18.15778 -17.35648 -17.25190 -16.77399 -16.71471 -16.62569 -16.46106 -16.05193 -15.77996 -15.58056 -15.47036 -15.05976 -14.74694 -14.52267 -14.46269 -14.33562 -14.12468 -14.02365 -13.88271 -13.77935 -13.46998 -13.29392 -13.21607 -13.12001 -12.92126 -12.62578 -12.41384 -12.14537 -12.03138 -11.86688 -11.72453 -11.63525 -11.16235 -10.59971 -10.49809 -10.30604 -10.12439 -10.06526 -9.46740 -5.02206 -0.73728 -0.35455 0.13293 0.21577 0.27424 1.24074 1.60404 1.88711 1.94792 2.34844 2.57081 2.72734 3.21935 3.30818 3.41484 3.51703 3.53889 3.67658 3.70476 3.79311 3.84057 3.85692 3.96229 4.01435 4.16546 4.21582 4.27824 4.33377 4.34807 4.39697 4.43631 4.61475 4.74360 4.86200 4.86639 4.93477 4.96885 5.00253 5.02467 5.06369 5.11222 5.14570 5.19006 5.27255 5.28521 5.47242 5.64450 5.72168 5.93229 6.04622 6.67755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.553 6.553 2 C -0.083 4.083 3 Si 0.773 3.227 4 C -0.065 4.065 5 C -0.124 4.124 6 C -0.026 4.026 7 C -0.675 4.675 8 S 2.713 3.287 9 O -0.989 6.989 10 O -0.979 6.979 11 N -1.088 6.088 12 C 0.117 3.883 13 H 0.118 0.882 14 C -0.132 4.132 15 C -0.072 4.072 16 H 0.110 0.890 17 C -0.080 4.080 18 C -0.089 4.089 19 C -0.159 4.159 20 C 0.062 3.938 21 F -0.157 7.157 22 C -0.162 4.162 23 C -0.093 4.093 24 C -0.146 4.146 25 C -0.019 4.019 26 C -0.137 4.137 27 H 0.397 0.603 28 H 0.114 0.886 29 H -0.275 1.275 30 H -0.301 1.301 31 H 0.138 0.862 32 H 0.146 0.854 33 H 0.428 0.572 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.157 0.843 37 H 0.143 0.857 38 H 0.140 0.860 39 H 0.150 0.850 40 H 0.108 0.892 41 H 0.078 0.922 42 H 0.162 0.838 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.016 2.507 -0.207 2.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.361 6.361 2 C -0.193 4.193 3 Si 0.678 3.322 4 C -0.066 4.066 5 C -0.143 4.143 6 C -0.046 4.046 7 C -0.763 4.763 8 S 2.805 3.195 9 O -0.979 6.979 10 O -0.969 6.969 11 N -0.849 5.849 12 C 0.010 3.990 13 H 0.136 0.864 14 C -0.171 4.171 15 C -0.090 4.090 16 H 0.128 0.872 17 C -0.080 4.080 18 C -0.107 4.107 19 C -0.177 4.177 20 C 0.043 3.957 21 F -0.136 7.136 22 C -0.181 4.181 23 C -0.111 4.111 24 C -0.185 4.185 25 C -0.038 4.038 26 C -0.155 4.155 27 H 0.247 0.753 28 H 0.131 0.869 29 H -0.201 1.201 30 H -0.229 1.229 31 H 0.156 0.844 32 H 0.164 0.836 33 H 0.265 0.735 34 H 0.100 0.900 35 H 0.125 0.875 36 H 0.175 0.825 37 H 0.161 0.839 38 H 0.157 0.843 39 H 0.167 0.833 40 H 0.127 0.873 41 H 0.097 0.903 42 H 0.180 0.820 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 0.139 2.868 -0.369 2.895 hybrid contribution 0.604 -1.067 -1.322 1.803 sum 0.743 1.801 -1.691 2.580 Atomic orbital electron populations 1.86503 1.16877 1.82172 1.50550 1.25361 0.85576 1.11287 0.97068 0.93703 0.78385 0.74838 0.85240 1.20835 0.94943 0.94795 0.95988 1.21309 1.00191 0.94509 0.98303 1.21106 0.91552 1.00513 0.91403 1.30816 1.16633 1.06868 1.21985 1.01100 0.72231 0.72602 0.73604 1.93575 1.67012 1.51264 1.86076 1.93579 1.85928 1.61556 1.55817 1.55086 1.24242 1.17302 1.88225 1.21846 0.87003 0.93305 0.96890 0.86412 1.23448 0.95650 1.01414 0.96571 1.21623 0.90269 1.00753 0.96369 0.87210 1.20013 0.96557 0.92790 0.98620 1.21166 0.93703 0.98713 0.97073 1.21390 0.96004 0.97932 1.02423 1.18140 0.80393 0.95876 1.01304 1.91467 1.39137 1.97184 1.85794 1.21374 0.97682 0.96387 1.02618 1.21217 0.92752 0.99950 0.97134 1.23664 0.98193 1.00106 0.96499 1.21182 0.94141 0.91774 0.96751 1.21386 0.99254 1.00887 0.93954 0.75311 0.86889 1.20132 1.22914 0.84378 0.83593 0.73458 0.90006 0.87531 0.82503 0.83881 0.84251 0.83272 0.87337 0.90337 0.82029 0.82323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.22 12.83 -148.98 -1.91 -0.69 16 2 C -0.08 0.32 2.80 71.24 0.20 0.52 16 3 Si 0.77 -4.22 29.80 68.60 2.04 -2.18 16 4 C -0.06 0.22 5.35 -19.86 -0.11 0.11 16 5 C -0.12 0.21 9.69 22.27 0.22 0.42 16 6 C -0.03 0.03 9.52 22.27 0.21 0.25 16 7 C -0.67 1.22 5.95 22.27 0.13 1.36 16 8 S 2.71 0.08 5.71 -56.49 -0.32 -0.24 16 9 O -0.99 -6.77 17.28 -128.00 -2.21 -8.98 16 10 O -0.98 -5.22 16.80 -128.00 -2.15 -7.37 16 11 N -1.09 7.01 5.73 -167.19 -0.96 6.05 16 12 C 0.12 -0.99 4.50 45.51 0.20 -0.78 16 13 H 0.12 -1.18 7.77 -2.38 -0.02 -1.19 16 14 C -0.13 1.14 7.33 31.12 0.23 1.37 16 15 C -0.07 0.61 3.81 -11.01 -0.04 0.56 16 16 H 0.11 -1.09 8.07 -2.39 -0.02 -1.11 16 17 C -0.08 0.37 5.29 -19.86 -0.11 0.26 16 18 C -0.09 0.39 8.62 22.26 0.19 0.58 16 19 C -0.16 0.04 10.03 22.31 0.22 0.26 16 20 C 0.06 0.23 7.30 22.38 0.16 0.39 16 21 F -0.16 -1.20 17.27 44.97 0.78 -0.42 16 22 C -0.16 -0.13 10.03 22.31 0.22 0.09 16 23 C -0.09 0.26 9.71 22.26 0.22 0.48 16 24 C -0.15 1.38 7.25 31.12 0.23 1.60 16 25 C -0.02 0.08 9.52 22.27 0.21 0.30 16 26 C -0.14 0.75 8.67 22.27 0.19 0.95 16 27 H 0.40 -3.98 8.70 -74.06 -0.64 -4.62 16 28 H 0.11 -0.34 7.96 -2.39 -0.02 -0.36 16 29 H -0.28 0.54 7.11 99.48 0.71 1.24 16 30 H -0.30 -0.89 7.11 99.48 0.71 -0.19 16 31 H 0.14 -0.37 8.06 -2.91 -0.02 -0.40 16 32 H 0.15 -0.40 7.62 -2.91 -0.02 -0.42 16 33 H 0.43 -4.06 8.80 -96.75 -0.85 -4.91 16 34 H 0.08 -0.65 8.14 -2.39 -0.02 -0.67 16 35 H 0.11 -1.04 7.73 -2.38 -0.02 -1.06 16 36 H 0.16 -1.52 6.64 -2.91 -0.02 -1.54 16 37 H 0.14 -0.39 8.06 -2.91 -0.02 -0.41 16 38 H 0.14 -0.16 8.06 -2.91 -0.02 -0.19 16 39 H 0.15 -1.04 8.05 -2.91 -0.02 -1.07 16 40 H 0.11 -1.23 6.29 -2.39 -0.02 -1.25 16 41 H 0.08 -0.67 8.14 -2.38 -0.02 -0.69 16 42 H 0.16 -1.30 7.61 -2.91 -0.02 -1.32 16 43 H 0.16 -1.69 4.91 -2.91 -0.01 -1.71 16 Total: 0.00 -24.45 375.61 -2.53 -26.98 By element: Atomic # 1 Polarization: -21.48 SS G_CDS: -0.38 Total: -21.86 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: 2.59 Total: 8.71 kcal Atomic # 7 Polarization: 7.01 SS G_CDS: -0.96 Total: 6.05 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: -6.27 Total: -17.03 kcal Atomic # 9 Polarization: -1.20 SS G_CDS: 0.78 Total: -0.42 kcal Atomic # 14 Polarization: -4.22 SS G_CDS: 2.04 Total: -2.18 kcal Atomic # 16 Polarization: 0.08 SS G_CDS: -0.32 Total: -0.24 kcal Total: -24.45 -2.53 -26.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10466354_13421422.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.541 kcal (2) G-P(sol) polarization free energy of solvation -24.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds