Wall clock time and date at job start Mon Mar 8 2021 09:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86296 * 109.46948 * 2 1 4 4 C 1.50702 * 109.46932 * 240.00659 * 2 1 3 5 5 C 1.33393 * 122.53873 * 284.99647 * 4 2 1 6 6 S 1.76195 * 125.20286 * 359.97438 * 5 4 2 7 7 O 1.42107 * 106.40479 * 336.46216 * 6 5 4 8 8 O 1.42098 * 106.40206 * 203.54165 * 6 5 4 9 9 N 1.65599 * 107.21828 * 89.99949 * 6 5 4 10 10 C 1.46503 * 120.00128 * 65.00146 * 9 6 5 11 11 H 1.09004 * 112.84099 * 13.80060 * 10 9 6 12 12 C 1.53780 * 113.61598 * 144.99722 * 10 9 6 13 13 C 1.53779 * 87.07735 * 89.11705 * 12 10 9 14 14 H 1.09000 * 113.61503 * 270.79750 * 13 12 10 15 15 C 1.50704 * 113.61049 * 139.98013 * 13 12 10 16 16 C 1.38245 * 119.97094 * 121.52885 * 15 13 12 17 17 C 1.38203 * 120.02517 * 179.97438 * 16 15 13 18 18 C 1.38457 * 119.97231 * 359.97438 * 17 16 15 19 19 F 1.35099 * 120.02648 * 180.02562 * 18 17 16 20 20 C 1.38463 * 119.95147 * 359.97438 * 18 17 16 21 21 C 1.38202 * 119.97039 * 0.02562 * 20 18 17 22 22 C 1.53777 * 87.17735 * 25.39151 * 13 12 10 23 23 S 1.75885 * 109.59353 * 180.26436 * 5 4 2 24 24 C 1.75882 * 90.97116 * 359.68436 * 23 5 4 25 25 C 1.33392 * 109.59528 * 0.31679 * 24 23 5 26 26 H 0.96698 * 113.99619 * 299.99099 * 1 2 3 27 27 H 1.08993 * 109.47645 * 120.00166 * 2 1 3 28 28 H 1.48501 * 110.00434 * 178.68425 * 3 2 1 29 29 H 1.48498 * 110.00283 * 300.00604 * 3 2 1 30 30 H 0.97007 * 119.99968 * 244.99718 * 9 6 5 31 31 H 1.09004 * 113.61284 * 334.57002 * 12 10 9 32 32 H 1.08996 * 113.68713 * 203.68058 * 12 10 9 33 33 H 1.07999 * 119.99425 * 359.72556 * 16 15 13 34 34 H 1.08002 * 120.01405 * 179.97438 * 17 16 15 35 35 H 1.08000 * 120.01718 * 180.02562 * 20 18 17 36 36 H 1.08000 * 119.98249 * 180.02562 * 21 20 18 37 37 H 1.08997 * 113.61830 * 89.15401 * 22 13 12 38 38 H 1.08998 * 113.61973 * 220.06132 * 22 13 12 39 39 H 1.07994 * 125.20815 * 180.10293 * 24 23 5 40 40 H 1.07995 * 122.54489 * 179.78388 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7103 -1.2306 5 6 1.8961 -2.0377 -1.3574 6 16 1.2764 -3.1577 -0.1466 7 8 1.3615 -2.4856 1.1026 8 8 1.9010 -4.4086 -0.4002 9 7 -0.3368 -3.3694 -0.4547 10 6 -0.7667 -4.0122 -1.6990 11 1 0.0487 -4.5148 -2.2193 12 6 -2.0251 -4.8818 -1.5404 13 6 -2.8426 -3.6164 -1.8491 14 1 -3.0916 -3.0307 -0.9642 15 6 -4.0332 -3.8689 -2.7379 16 6 -5.3040 -3.5488 -2.2975 17 6 -6.3965 -3.7794 -3.1118 18 6 -6.2180 -4.3307 -4.3693 19 9 -7.2852 -4.5560 -5.1664 20 6 -4.9446 -4.6498 -4.8097 21 6 -3.8536 -4.4183 -3.9936 22 6 -1.6089 -3.0959 -2.6053 23 16 2.5705 -2.4995 -2.9148 24 6 2.8625 -0.8135 -3.3220 25 6 2.4646 -0.0347 -2.3147 26 1 -0.3932 0.4416 0.7651 27 1 1.7924 -0.5138 0.8899 28 1 3.5346 1.7704 0.0320 29 1 1.5614 2.4679 -1.2084 30 1 -0.9972 -3.0678 0.1887 31 1 -2.1702 -5.2592 -0.5281 32 1 -2.1192 -5.6584 -2.2993 33 1 -5.4435 -3.1222 -1.3152 34 1 -7.3893 -3.5297 -2.7674 35 1 -4.8041 -5.0794 -5.7905 36 1 -2.8603 -4.6668 -4.3371 37 1 -1.5879 -3.3829 -3.6566 38 1 -1.4184 -2.0337 -2.4516 39 1 3.3003 -0.4626 -4.2447 40 1 2.5515 1.0414 -2.3431 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_10466354_13652106.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:12:40 Heat of formation + Delta-G solvation = -50.911584 kcal Electronic energy + Delta-G solvation = -29070.878990 eV Core-core repulsion = 24793.742631 eV Total energy + Delta-G solvation = -4277.136359 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.054 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -49.78143 -41.29091 -40.03539 -39.12285 -38.16091 -37.16745 -36.88927 -34.25974 -32.16737 -31.55882 -31.11212 -28.05141 -26.79889 -26.00135 -24.23040 -24.12284 -22.77576 -21.62354 -20.73983 -19.90683 -19.41163 -18.78436 -18.55112 -18.47173 -17.38870 -17.32921 -16.99593 -16.83648 -16.48961 -16.27238 -15.94879 -15.56865 -15.50839 -15.14826 -14.70878 -14.57491 -14.46718 -14.39503 -14.31127 -14.10324 -13.92174 -13.76835 -13.65091 -13.19790 -13.16623 -13.07882 -12.95495 -12.63858 -12.52017 -12.26194 -12.24512 -11.87370 -11.83887 -11.76028 -11.35174 -10.66271 -10.46444 -10.32222 -10.10890 -9.71161 -9.48292 -5.07674 -0.85336 -0.56792 0.12368 0.22737 0.24245 0.56678 1.11168 1.18120 1.56991 1.85683 1.90245 2.52699 2.64632 3.17383 3.30205 3.31466 3.43053 3.53925 3.55518 3.73282 3.77274 3.84014 3.87983 3.91244 3.95071 4.08024 4.09080 4.22942 4.34676 4.39709 4.55475 4.60609 4.62019 4.80421 4.85561 4.86609 4.92908 4.95943 4.97613 5.01720 5.14632 5.21783 5.30901 5.54175 5.88272 5.90213 6.49189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.541 6.541 2 C -0.097 4.097 3 Si 0.696 3.304 4 C 0.058 3.942 5 C -0.778 4.778 6 S 2.724 3.276 7 O -0.944 6.944 8 O -0.951 6.951 9 N -1.086 6.086 10 C 0.122 3.878 11 H 0.105 0.895 12 C -0.132 4.132 13 C -0.070 4.070 14 H 0.102 0.898 15 C -0.081 4.081 16 C -0.086 4.086 17 C -0.151 4.151 18 C 0.093 3.907 19 F -0.140 7.140 20 C -0.151 4.151 21 C -0.089 4.089 22 C -0.148 4.148 23 S 0.231 5.769 24 C -0.163 4.163 25 C -0.170 4.170 26 H 0.388 0.612 27 H 0.115 0.885 28 H -0.253 1.253 29 H -0.249 1.249 30 H 0.423 0.577 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.132 0.868 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.133 0.867 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.179 0.821 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.611 3.200 0.367 3.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.348 6.348 2 C -0.210 4.210 3 Si 0.596 3.404 4 C 0.040 3.960 5 C -0.978 4.978 6 S 2.809 3.191 7 O -0.935 6.935 8 O -0.940 6.940 9 N -0.845 5.845 10 C 0.014 3.986 11 H 0.123 0.877 12 C -0.172 4.172 13 C -0.089 4.089 14 H 0.121 0.879 15 C -0.081 4.081 16 C -0.104 4.104 17 C -0.170 4.170 18 C 0.074 3.926 19 F -0.119 7.119 20 C -0.170 4.170 21 C -0.107 4.107 22 C -0.187 4.187 23 S 0.498 5.502 24 C -0.301 4.301 25 C -0.200 4.200 26 H 0.237 0.763 27 H 0.132 0.868 28 H -0.177 1.177 29 H -0.174 1.174 30 H 0.259 0.741 31 H 0.101 0.899 32 H 0.117 0.883 33 H 0.150 0.850 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.151 0.849 37 H 0.114 0.886 38 H 0.102 0.898 39 H 0.196 0.804 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.834 1.614 -0.912 2.033 hybrid contribution -0.742 1.518 -0.158 1.697 sum 0.092 3.132 -1.070 3.311 Atomic orbital electron populations 1.86376 1.16206 1.82234 1.50012 1.24981 0.86712 1.11757 0.97553 0.94846 0.81141 0.77453 0.86956 1.18056 0.93020 0.90633 0.94276 1.35748 1.26547 1.14197 1.21352 1.01155 0.72306 0.72951 0.72686 1.93545 1.85560 1.75465 1.38890 1.93631 1.74698 1.40036 1.85681 1.55181 1.25848 1.74250 1.29212 1.21726 0.97815 0.94472 0.84620 0.87732 1.23419 0.93592 0.96413 1.03730 1.21539 0.91270 0.98075 0.97989 0.87948 1.19775 0.94437 0.99023 0.94855 1.20950 0.91237 0.98606 0.99618 1.21198 1.00762 1.01756 0.93276 1.17778 0.83731 1.01263 0.89825 1.91519 1.54739 1.92539 1.73095 1.21178 0.91150 1.03024 1.01600 1.20878 0.98622 0.97942 0.93245 1.23661 0.94648 1.01185 0.99250 1.84269 1.55512 1.04570 1.05805 1.26198 1.03257 0.97293 1.03317 1.20248 1.04463 1.01474 0.93778 0.76307 0.86767 1.17707 1.17388 0.74143 0.89932 0.88272 0.84964 0.84676 0.84674 0.84889 0.88599 0.89779 0.80386 0.83479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.74 12.86 -35.23 -0.45 0.29 16 2 C -0.10 -0.01 1.96 36.01 0.07 0.06 16 3 Si 0.70 -0.94 30.42 -169.99 -5.17 -6.11 16 4 C 0.06 0.10 5.17 -106.24 -0.55 -0.45 16 5 C -0.78 -1.36 6.54 29.04 0.19 -1.17 16 6 S 2.72 5.50 5.72 -107.50 -0.62 4.88 16 7 O -0.94 -3.21 14.92 -57.17 -0.85 -4.07 16 8 O -0.95 -4.54 17.43 -57.17 -1.00 -5.54 16 9 N -1.09 1.19 5.73 -4.12 -0.02 1.17 16 10 C 0.12 -0.22 4.51 -67.02 -0.30 -0.52 16 11 H 0.10 -0.19 7.77 -51.93 -0.40 -0.60 16 12 C -0.13 0.33 7.33 -25.92 -0.19 0.14 16 13 C -0.07 0.18 3.80 -90.96 -0.35 -0.17 16 14 H 0.10 -0.33 8.05 -51.93 -0.42 -0.75 16 15 C -0.08 0.09 5.29 -104.62 -0.55 -0.46 16 16 C -0.09 0.07 9.70 -39.59 -0.38 -0.32 16 17 C -0.15 -0.06 10.03 -39.51 -0.40 -0.46 16 18 C 0.09 0.15 7.30 -39.42 -0.29 -0.13 16 19 F -0.14 -0.45 17.27 2.25 0.04 -0.41 16 20 C -0.15 -0.04 10.03 -39.51 -0.40 -0.43 16 21 C -0.09 0.09 8.54 -39.59 -0.34 -0.25 16 22 C -0.15 0.35 7.27 -25.83 -0.19 0.16 16 23 S 0.23 0.09 23.21 -107.50 -2.50 -2.41 16 24 C -0.16 0.06 11.23 29.04 0.33 0.39 16 25 C -0.17 -0.16 8.74 -41.21 -0.36 -0.52 16 26 H 0.39 -2.25 8.74 45.56 0.40 -1.85 16 27 H 0.11 0.05 5.66 -51.93 -0.29 -0.24 16 28 H -0.25 -0.33 7.11 56.52 0.40 0.07 16 29 H -0.25 -0.20 6.86 56.52 0.39 0.19 16 30 H 0.42 -1.23 8.79 -34.47 -0.30 -1.53 16 31 H 0.08 -0.21 8.14 -51.93 -0.42 -0.63 16 32 H 0.10 -0.30 7.65 -51.93 -0.40 -0.70 16 33 H 0.13 -0.35 8.05 -52.49 -0.42 -0.78 16 34 H 0.14 -0.12 8.06 -52.49 -0.42 -0.54 16 35 H 0.14 -0.14 8.06 -52.49 -0.42 -0.57 16 36 H 0.13 -0.40 6.72 -52.49 -0.35 -0.76 16 37 H 0.10 -0.30 6.39 -51.93 -0.33 -0.63 16 38 H 0.08 -0.12 8.14 -51.93 -0.42 -0.54 16 39 H 0.18 -0.57 8.06 -52.49 -0.42 -1.00 16 40 H 0.15 0.02 5.57 -52.49 -0.29 -0.27 16 LS Contribution 362.79 15.07 5.47 5.47 Total: 0.00 -9.02 362.79 -12.95 -21.97 By element: Atomic # 1 Polarization: -6.97 SS G_CDS: -4.14 Total: -11.11 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -3.70 Total: -4.12 kcal Atomic # 7 Polarization: 1.19 SS G_CDS: -0.02 Total: 1.17 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: -2.30 Total: -9.32 kcal Atomic # 9 Polarization: -0.45 SS G_CDS: 0.04 Total: -0.41 kcal Atomic # 14 Polarization: -0.94 SS G_CDS: -5.17 Total: -6.11 kcal Atomic # 16 Polarization: 5.59 SS G_CDS: -3.11 Total: 2.48 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -9.02 -12.95 -21.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10466354_13652106.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.944 kcal (2) G-P(sol) polarization free energy of solvation -9.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds