Wall clock time and date at job start Mon Mar 8 2021 09:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86296 * 109.46948 * 2 1 4 4 C 1.50702 * 109.46932 * 240.00659 * 2 1 3 5 5 C 1.33393 * 122.53873 * 284.99647 * 4 2 1 6 6 S 1.76195 * 125.20286 * 359.97438 * 5 4 2 7 7 O 1.42107 * 106.40479 * 336.46216 * 6 5 4 8 8 O 1.42098 * 106.40206 * 203.54165 * 6 5 4 9 9 N 1.65599 * 107.21828 * 89.99949 * 6 5 4 10 10 C 1.46503 * 120.00128 * 65.00146 * 9 6 5 11 11 H 1.09004 * 112.84099 * 13.80060 * 10 9 6 12 12 C 1.53780 * 113.61598 * 144.99722 * 10 9 6 13 13 C 1.53779 * 87.07735 * 89.11705 * 12 10 9 14 14 H 1.09000 * 113.61503 * 270.79750 * 13 12 10 15 15 C 1.50704 * 113.61049 * 139.98013 * 13 12 10 16 16 C 1.38245 * 119.97094 * 121.52885 * 15 13 12 17 17 C 1.38203 * 120.02517 * 179.97438 * 16 15 13 18 18 C 1.38457 * 119.97231 * 359.97438 * 17 16 15 19 19 F 1.35099 * 120.02648 * 180.02562 * 18 17 16 20 20 C 1.38463 * 119.95147 * 359.97438 * 18 17 16 21 21 C 1.38202 * 119.97039 * 0.02562 * 20 18 17 22 22 C 1.53777 * 87.17735 * 25.39151 * 13 12 10 23 23 S 1.75885 * 109.59353 * 180.26436 * 5 4 2 24 24 C 1.75882 * 90.97116 * 359.68436 * 23 5 4 25 25 C 1.33392 * 109.59528 * 0.31679 * 24 23 5 26 26 H 0.96698 * 113.99619 * 299.99099 * 1 2 3 27 27 H 1.08993 * 109.47645 * 120.00166 * 2 1 3 28 28 H 1.48501 * 110.00434 * 178.68425 * 3 2 1 29 29 H 1.48498 * 110.00283 * 300.00604 * 3 2 1 30 30 H 0.97007 * 119.99968 * 244.99718 * 9 6 5 31 31 H 1.09004 * 113.61284 * 334.57002 * 12 10 9 32 32 H 1.08996 * 113.68713 * 203.68058 * 12 10 9 33 33 H 1.07999 * 119.99425 * 359.72556 * 16 15 13 34 34 H 1.08002 * 120.01405 * 179.97438 * 17 16 15 35 35 H 1.08000 * 120.01718 * 180.02562 * 20 18 17 36 36 H 1.08000 * 119.98249 * 180.02562 * 21 20 18 37 37 H 1.08997 * 113.61830 * 89.15401 * 22 13 12 38 38 H 1.08998 * 113.61973 * 220.06132 * 22 13 12 39 39 H 1.07994 * 125.20815 * 180.10293 * 24 23 5 40 40 H 1.07995 * 122.54489 * 179.78388 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7103 -1.2306 5 6 1.8961 -2.0377 -1.3574 6 16 1.2764 -3.1577 -0.1466 7 8 1.3615 -2.4856 1.1026 8 8 1.9010 -4.4086 -0.4002 9 7 -0.3368 -3.3694 -0.4547 10 6 -0.7667 -4.0122 -1.6990 11 1 0.0487 -4.5148 -2.2193 12 6 -2.0251 -4.8818 -1.5404 13 6 -2.8426 -3.6164 -1.8491 14 1 -3.0916 -3.0307 -0.9642 15 6 -4.0332 -3.8689 -2.7379 16 6 -5.3040 -3.5488 -2.2975 17 6 -6.3965 -3.7794 -3.1118 18 6 -6.2180 -4.3307 -4.3693 19 9 -7.2852 -4.5560 -5.1664 20 6 -4.9446 -4.6498 -4.8097 21 6 -3.8536 -4.4183 -3.9936 22 6 -1.6089 -3.0959 -2.6053 23 16 2.5705 -2.4995 -2.9148 24 6 2.8625 -0.8135 -3.3220 25 6 2.4646 -0.0347 -2.3147 26 1 -0.3932 0.4416 0.7651 27 1 1.7924 -0.5138 0.8899 28 1 3.5346 1.7704 0.0320 29 1 1.5614 2.4679 -1.2084 30 1 -0.9972 -3.0678 0.1887 31 1 -2.1702 -5.2592 -0.5281 32 1 -2.1192 -5.6584 -2.2993 33 1 -5.4435 -3.1222 -1.3152 34 1 -7.3893 -3.5297 -2.7674 35 1 -4.8041 -5.0794 -5.7905 36 1 -2.8603 -4.6668 -4.3371 37 1 -1.5879 -3.3829 -3.6566 38 1 -1.4184 -2.0337 -2.4516 39 1 3.3003 -0.4626 -4.2447 40 1 2.5515 1.0414 -2.3431 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10466354_13652106.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:12:39 Heat of formation + Delta-G solvation = -50.623029 kcal Electronic energy + Delta-G solvation = -29070.866477 eV Core-core repulsion = 24793.742631 eV Total energy + Delta-G solvation = -4277.123847 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.054 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.90578 -41.16084 -40.03260 -39.04379 -38.34898 -37.16578 -37.01107 -34.20075 -32.09933 -31.55441 -31.05258 -28.05116 -26.60347 -25.89469 -24.20879 -24.05569 -22.71613 -21.69206 -20.68171 -19.87505 -19.41652 -18.82172 -18.59624 -18.39397 -17.35945 -17.33757 -16.98711 -16.77162 -16.60975 -16.31940 -16.00262 -15.50234 -15.44743 -15.06947 -14.68362 -14.47469 -14.44165 -14.36439 -14.30088 -14.08844 -13.91433 -13.75898 -13.48910 -13.39207 -13.29851 -13.12653 -12.95601 -12.73391 -12.50542 -12.29545 -12.13753 -11.80715 -11.72817 -11.70496 -11.19612 -10.61643 -10.42358 -10.25200 -10.04865 -9.72968 -9.45537 -4.98301 -0.89681 -0.65147 0.14715 0.22145 0.29048 0.56960 1.09511 1.24906 1.63327 1.86512 1.91027 2.54409 2.58496 3.22508 3.32054 3.37201 3.50542 3.68292 3.69163 3.84374 3.89948 3.92329 3.96890 3.97771 4.01209 4.15731 4.24777 4.34897 4.41758 4.43985 4.61097 4.72807 4.84367 4.85444 4.93089 4.96487 5.01794 5.07436 5.10513 5.14405 5.20203 5.29505 5.46246 5.65657 5.94603 6.05861 6.84708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.110 4.110 3 Si 0.782 3.218 4 C 0.046 3.954 5 C -0.794 4.794 6 S 2.733 3.267 7 O -0.964 6.964 8 O -0.983 6.983 9 N -1.075 6.075 10 C 0.114 3.886 11 H 0.104 0.896 12 C -0.129 4.129 13 C -0.065 4.065 14 H 0.112 0.888 15 C -0.079 4.079 16 C -0.090 4.090 17 C -0.160 4.160 18 C 0.063 3.937 19 F -0.157 7.157 20 C -0.159 4.159 21 C -0.090 4.090 22 C -0.143 4.143 23 S 0.233 5.767 24 C -0.150 4.150 25 C -0.192 4.192 26 H 0.407 0.593 27 H 0.108 0.892 28 H -0.291 1.291 29 H -0.275 1.275 30 H 0.431 0.569 31 H 0.085 0.915 32 H 0.106 0.894 33 H 0.152 0.848 34 H 0.142 0.858 35 H 0.143 0.857 36 H 0.154 0.846 37 H 0.106 0.894 38 H 0.076 0.924 39 H 0.207 0.793 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.544 3.740 0.366 3.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.221 4.221 3 Si 0.686 3.314 4 C 0.028 3.972 5 C -0.996 4.996 6 S 2.820 3.180 7 O -0.954 6.954 8 O -0.973 6.973 9 N -0.837 5.837 10 C 0.006 3.994 11 H 0.122 0.878 12 C -0.168 4.168 13 C -0.084 4.084 14 H 0.131 0.869 15 C -0.079 4.079 16 C -0.108 4.108 17 C -0.179 4.179 18 C 0.044 3.956 19 F -0.135 7.135 20 C -0.178 4.178 21 C -0.108 4.108 22 C -0.182 4.182 23 S 0.500 5.500 24 C -0.288 4.288 25 C -0.221 4.221 26 H 0.259 0.741 27 H 0.125 0.875 28 H -0.218 1.218 29 H -0.202 1.202 30 H 0.270 0.730 31 H 0.103 0.897 32 H 0.125 0.875 33 H 0.169 0.831 34 H 0.159 0.841 35 H 0.161 0.839 36 H 0.171 0.829 37 H 0.124 0.876 38 H 0.095 0.905 39 H 0.224 0.776 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 0.865 2.142 -0.872 2.469 hybrid contribution -0.733 1.362 -0.189 1.559 sum 0.132 3.504 -1.061 3.663 Atomic orbital electron populations 1.86337 1.15300 1.82740 1.51359 1.25147 0.87621 1.12662 0.96711 0.93881 0.77636 0.74938 0.84994 1.18388 0.92905 0.90872 0.95022 1.35648 1.27746 1.14217 1.21987 1.00575 0.72799 0.72308 0.72348 1.93512 1.86114 1.75613 1.40151 1.93589 1.75881 1.41701 1.86152 1.54913 1.24779 1.74179 1.29832 1.21874 0.98197 0.94963 0.84366 0.87812 1.23440 0.92745 0.96468 1.04191 1.21561 0.90558 0.98202 0.98048 0.86944 1.19983 0.94785 0.98219 0.94936 1.21221 0.91015 0.98306 1.00259 1.21380 1.01661 1.01788 0.93088 1.18128 0.83931 1.03036 0.90530 1.91468 1.55550 1.92901 1.73626 1.21370 0.91025 1.03087 1.02280 1.21140 0.99144 0.97385 0.93131 1.23649 0.94303 1.00579 0.99710 1.84235 1.55382 1.05206 1.05197 1.26572 1.01751 0.96585 1.03866 1.20409 1.05548 1.01939 0.94238 0.74137 0.87459 1.21814 1.20193 0.73034 0.89682 0.87538 0.83056 0.84063 0.83943 0.82868 0.87623 0.90496 0.77578 0.83048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.76 12.86 -148.98 -1.92 -0.16 16 2 C -0.11 -0.03 1.96 71.24 0.14 0.11 16 3 Si 0.78 -2.11 30.42 68.60 2.09 -0.02 16 4 C 0.05 0.16 5.17 -20.92 -0.11 0.06 16 5 C -0.79 -3.10 6.54 66.72 0.44 -2.66 16 6 S 2.73 12.83 5.72 -56.49 -0.32 12.51 16 7 O -0.96 -7.33 14.92 -128.00 -1.91 -9.24 16 8 O -0.98 -10.39 17.43 -128.00 -2.23 -12.62 16 9 N -1.08 2.51 5.73 -166.94 -0.96 1.55 16 10 C 0.11 -0.47 4.51 45.58 0.21 -0.27 16 11 H 0.10 -0.40 7.77 -2.38 -0.02 -0.42 16 12 C -0.13 0.80 7.33 31.12 0.23 1.03 16 13 C -0.07 0.42 3.80 -11.01 -0.04 0.37 16 14 H 0.11 -0.92 8.05 -2.39 -0.02 -0.94 16 15 C -0.08 0.26 5.29 -19.86 -0.11 0.16 16 16 C -0.09 0.20 9.70 22.26 0.22 0.42 16 17 C -0.16 -0.18 10.03 22.31 0.22 0.04 16 18 C 0.06 0.26 7.30 22.38 0.16 0.43 16 19 F -0.16 -1.25 17.27 44.97 0.78 -0.48 16 20 C -0.16 -0.12 10.03 22.31 0.22 0.11 16 21 C -0.09 0.26 8.54 22.26 0.19 0.45 16 22 C -0.14 0.83 7.27 31.18 0.23 1.05 16 23 S 0.23 0.17 23.21 -56.49 -1.31 -1.14 16 24 C -0.15 0.22 11.23 66.72 0.75 0.97 16 25 C -0.19 -0.34 8.74 21.22 0.19 -0.16 16 26 H 0.41 -5.08 8.74 -74.06 -0.65 -5.72 16 27 H 0.11 0.16 5.66 -2.39 -0.01 0.15 16 28 H -0.29 -1.02 7.11 99.48 0.71 -0.31 16 29 H -0.28 -0.42 6.86 99.48 0.68 0.26 16 30 H 0.43 -2.70 8.79 -96.74 -0.85 -3.55 16 31 H 0.08 -0.53 8.14 -2.39 -0.02 -0.55 16 32 H 0.11 -0.79 7.65 -2.39 -0.02 -0.81 16 33 H 0.15 -1.02 8.05 -2.91 -0.02 -1.04 16 34 H 0.14 -0.16 8.06 -2.91 -0.02 -0.19 16 35 H 0.14 -0.25 8.06 -2.91 -0.02 -0.27 16 36 H 0.15 -1.16 6.72 -2.91 -0.02 -1.18 16 37 H 0.11 -0.82 6.39 -2.39 -0.02 -0.83 16 38 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 39 H 0.21 -1.68 8.06 -2.91 -0.02 -1.71 16 40 H 0.15 0.05 5.57 -2.91 -0.02 0.03 16 Total: 0.00 -21.65 362.79 -3.21 -24.86 By element: Atomic # 1 Polarization: -17.01 SS G_CDS: -0.36 Total: -17.37 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: 2.93 Total: 2.11 kcal Atomic # 7 Polarization: 2.51 SS G_CDS: -0.96 Total: 1.55 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -6.06 Total: -22.02 kcal Atomic # 9 Polarization: -1.25 SS G_CDS: 0.78 Total: -0.48 kcal Atomic # 14 Polarization: -2.11 SS G_CDS: 2.09 Total: -0.02 kcal Atomic # 16 Polarization: 13.00 SS G_CDS: -1.63 Total: 11.36 kcal Total: -21.65 -3.21 -24.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10466354_13652106.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.764 kcal (2) G-P(sol) polarization free energy of solvation -21.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds