Wall clock time and date at job start Mon Mar 8 2021 09:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86299 * 109.47135 * 2 1 4 4 C 1.50706 * 109.47086 * 119.99584 * 2 1 3 5 5 C 1.33388 * 125.19909 * 39.28782 * 4 2 1 6 6 S 1.76200 * 122.54085 * 359.97438 * 5 4 2 7 7 O 1.42092 * 106.40340 * 278.78739 * 6 5 4 8 8 O 1.42102 * 106.40236 * 51.70790 * 6 5 4 9 9 N 1.65606 * 107.21813 * 165.24834 * 6 5 4 10 10 C 1.46497 * 120.00012 * 66.22492 * 9 6 5 11 11 H 1.09000 * 112.84968 * 346.87388 * 10 9 6 12 12 C 1.53774 * 113.61290 * 118.18532 * 10 9 6 13 13 C 1.53778 * 87.08398 * 89.11609 * 12 10 9 14 14 H 1.08995 * 113.61366 * 270.88213 * 13 12 10 15 15 C 1.50699 * 113.61605 * 139.97963 * 13 12 10 16 16 C 1.38246 * 119.97616 * 322.23400 * 15 13 12 17 17 C 1.38196 * 120.02713 * 179.72567 * 16 15 13 18 18 C 1.38458 * 119.97099 * 0.56351 * 17 16 15 19 19 F 1.35109 * 120.02341 * 179.67806 * 18 17 16 20 20 C 1.38456 * 119.95333 * 359.70772 * 18 17 16 21 21 C 1.38201 * 119.97131 * 359.97438 * 20 18 17 22 22 C 1.53780 * 87.08188 * 25.43201 * 13 12 10 23 23 C 1.38428 * 114.91903 * 179.97438 * 5 4 2 24 24 C 1.33384 * 114.92120 * 359.97438 * 23 5 4 25 25 S 1.75876 * 125.20330 * 218.98161 * 4 2 1 26 26 H 0.96706 * 113.99883 * 295.98010 * 1 2 3 27 27 H 1.08992 * 109.47190 * 239.99885 * 2 1 3 28 28 H 1.48503 * 109.99848 * 299.99752 * 3 2 1 29 29 H 1.48497 * 110.00344 * 61.31882 * 3 2 1 30 30 H 0.97001 * 119.99827 * 246.22558 * 9 6 5 31 31 H 1.09007 * 113.61406 * 203.66669 * 12 10 9 32 32 H 1.09004 * 113.61847 * 334.56210 * 12 10 9 33 33 H 1.08005 * 119.98429 * 359.97190 * 16 15 13 34 34 H 1.07998 * 120.01221 * 180.24433 * 17 16 15 35 35 H 1.08005 * 120.01939 * 179.97438 * 20 18 17 36 36 H 1.07997 * 119.98438 * 180.02562 * 21 20 18 37 37 H 1.08997 * 113.61204 * 220.01967 * 22 13 12 38 38 H 1.08996 * 113.69076 * 89.12902 * 22 13 12 39 39 H 1.08001 * 122.53400 * 179.97438 * 23 5 4 40 40 H 1.07998 * 125.20700 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7103 1.2306 5 6 1.3923 -1.8111 1.7569 6 16 -0.0206 -2.6007 1.0604 7 8 -1.1528 -1.8754 1.5197 8 8 0.2689 -2.7994 -0.3166 9 7 -0.1240 -4.1079 1.7387 10 6 -0.4107 -4.2495 3.1684 11 1 -0.3101 -3.3120 3.7152 12 6 -1.7209 -4.9989 3.4625 13 6 -0.8921 -6.2941 3.4461 14 1 -0.8104 -6.7476 2.4583 15 6 -1.2919 -7.2803 4.5131 16 6 -1.6589 -6.8298 5.7675 17 6 -2.0312 -7.7329 6.7451 18 6 -2.0253 -9.0901 6.4713 19 9 -2.3828 -9.9744 7.4282 20 6 -1.6522 -9.5406 5.2163 21 6 -1.2866 -8.6351 4.2383 22 6 0.3208 -5.4298 3.8294 23 6 2.0269 -2.2861 2.8917 24 6 3.0816 -1.5714 3.2866 25 16 3.3225 -0.2191 2.1879 26 1 -0.3933 0.3870 0.7942 27 1 1.7923 -0.5138 -0.8899 28 1 1.5615 2.4678 -1.2086 29 1 1.5879 2.4586 1.2242 30 1 0.0053 -4.8969 1.1895 31 1 -2.1477 -4.7659 4.4382 32 1 -2.4503 -4.9369 2.6548 33 1 -1.6585 -5.7713 5.9824 34 1 -2.3217 -7.3804 7.7237 35 1 -1.6468 -10.5991 5.0017 36 1 -0.9959 -8.9862 3.2592 37 1 1.2397 -5.7157 3.3178 38 1 0.4536 -5.3140 4.9050 39 1 1.6932 -3.1685 3.4175 40 1 3.6960 -1.7915 4.1471 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_10466354_14772022.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:12:44 Heat of formation + Delta-G solvation = -53.401431 kcal Electronic energy + Delta-G solvation = -28771.281122 eV Core-core repulsion = 24494.036795 eV Total energy + Delta-G solvation = -4277.244327 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.054 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -49.80337 -41.39102 -39.77979 -39.21326 -38.00310 -37.78480 -36.64909 -34.34719 -32.19969 -31.88235 -31.15683 -27.64059 -26.90868 -26.10935 -24.53653 -24.15448 -22.80507 -21.75380 -20.82888 -20.19963 -19.48848 -18.77214 -18.38942 -17.98673 -17.40262 -17.18771 -17.11873 -16.79576 -16.61992 -16.51251 -16.02976 -15.62942 -15.58473 -15.48392 -15.05501 -14.62521 -14.51753 -14.26505 -14.22168 -14.05838 -13.94986 -13.87794 -13.72013 -13.20348 -13.00953 -12.96309 -12.88095 -12.78180 -12.63490 -12.29777 -12.23706 -11.93791 -11.89815 -11.64374 -11.40859 -11.16102 -10.67801 -10.18955 -10.14048 -9.84583 -9.52055 -5.24891 -0.68280 -0.56346 0.08802 0.19651 0.27783 0.58119 0.96152 1.07930 1.44819 1.78637 1.91645 2.49020 2.72679 2.99199 3.22508 3.23411 3.27814 3.43436 3.45677 3.59380 3.68147 3.77430 3.88141 3.90211 3.96891 4.03184 4.06018 4.19561 4.31261 4.32124 4.45181 4.53325 4.54112 4.72060 4.75815 4.78131 4.86893 4.92977 4.97760 5.00392 5.11758 5.17781 5.24857 5.49527 5.80577 5.86339 6.11225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.523 6.523 2 C -0.075 4.075 3 Si 0.681 3.319 4 C -0.102 4.102 5 C -0.668 4.668 6 S 2.719 3.281 7 O -0.946 6.946 8 O -0.943 6.943 9 N -1.101 6.101 10 C 0.120 3.880 11 H 0.106 0.894 12 C -0.144 4.144 13 C -0.072 4.072 14 H 0.102 0.898 15 C -0.082 4.082 16 C -0.089 4.089 17 C -0.150 4.150 18 C 0.094 3.906 19 F -0.140 7.140 20 C -0.151 4.151 21 C -0.086 4.086 22 C -0.142 4.142 23 C -0.090 4.090 24 C -0.208 4.208 25 S 0.167 5.833 26 H 0.389 0.611 27 H 0.150 0.850 28 H -0.229 1.229 29 H -0.241 1.241 30 H 0.421 0.579 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.134 0.866 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.132 0.868 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.153 0.847 40 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.287 0.440 2.424 5.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.331 6.331 2 C -0.185 4.185 3 Si 0.576 3.424 4 C -0.222 4.222 5 C -0.766 4.766 6 S 2.804 3.196 7 O -0.936 6.936 8 O -0.933 6.933 9 N -0.860 5.860 10 C 0.012 3.988 11 H 0.124 0.876 12 C -0.183 4.183 13 C -0.090 4.090 14 H 0.120 0.880 15 C -0.082 4.082 16 C -0.107 4.107 17 C -0.169 4.169 18 C 0.075 3.925 19 F -0.119 7.119 20 C -0.170 4.170 21 C -0.104 4.104 22 C -0.181 4.181 23 C -0.119 4.119 24 C -0.344 4.344 25 S 0.431 5.569 26 H 0.239 0.761 27 H 0.167 0.833 28 H -0.151 1.151 29 H -0.164 1.164 30 H 0.256 0.744 31 H 0.117 0.883 32 H 0.102 0.898 33 H 0.152 0.848 34 H 0.154 0.846 35 H 0.154 0.846 36 H 0.150 0.850 37 H 0.101 0.899 38 H 0.118 0.882 39 H 0.171 0.829 40 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 5.657 2.710 1.349 6.417 hybrid contribution -1.333 -2.093 1.220 2.766 sum 4.324 0.617 2.570 5.068 Atomic orbital electron populations 1.86690 1.16382 1.83134 1.46921 1.25128 0.84596 1.12121 0.96700 0.95336 0.90353 0.73395 0.83270 1.24955 0.99592 0.97480 1.00220 1.29889 1.26220 1.09982 1.10556 1.01505 0.73393 0.71933 0.72742 1.93585 1.46836 1.70992 1.82138 1.93603 1.85259 1.84795 1.29687 1.55478 1.87536 1.25672 1.17345 1.21739 0.97201 0.99554 0.80326 0.87573 1.23584 0.96790 0.94213 1.03710 1.21541 0.96760 0.93169 0.97546 0.87952 1.19753 0.99825 0.93902 0.94769 1.20885 0.97853 0.99829 0.92098 1.21181 1.03075 0.91391 1.01275 1.17785 1.00944 0.87184 0.86595 1.91525 1.89416 1.68132 1.62781 1.21202 1.02231 1.01328 0.92217 1.20951 0.98196 0.92143 0.99127 1.23549 0.97777 0.94790 1.01963 1.19797 0.95789 1.01286 0.94979 1.25930 1.03385 1.00119 1.04969 1.84260 1.26118 1.27554 1.18928 0.76051 0.83288 1.15134 1.16426 0.74408 0.88264 0.89844 0.84818 0.84620 0.84649 0.84965 0.89877 0.88187 0.82942 0.80667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 -1.43 9.82 -60.03 -0.59 -2.02 16 2 C -0.07 -0.05 2.36 36.01 0.08 0.03 16 3 Si 0.68 -0.70 31.25 -169.99 -5.31 -6.02 16 4 C -0.10 -0.05 5.70 -36.00 -0.21 -0.26 16 5 C -0.67 -0.44 5.72 -41.21 -0.24 -0.68 16 6 S 2.72 5.01 4.16 -107.50 -0.45 4.56 16 7 O -0.95 -3.97 16.33 -64.89 -1.06 -5.03 16 8 O -0.94 -4.67 17.05 -62.33 -1.06 -5.74 16 9 N -1.10 1.90 5.50 -4.20 -0.02 1.87 16 10 C 0.12 -0.35 2.78 -67.12 -0.19 -0.53 16 11 H 0.11 -0.38 7.12 -51.93 -0.37 -0.75 16 12 C -0.14 0.37 7.25 -25.92 -0.19 0.18 16 13 C -0.07 0.22 3.80 -90.96 -0.35 -0.12 16 14 H 0.10 -0.39 8.05 -51.93 -0.42 -0.80 16 15 C -0.08 0.13 5.29 -104.62 -0.55 -0.42 16 16 C -0.09 0.14 8.59 -39.59 -0.34 -0.20 16 17 C -0.15 0.02 10.03 -39.52 -0.40 -0.37 16 18 C 0.09 0.13 7.30 -39.42 -0.29 -0.16 16 19 F -0.14 -0.41 17.27 2.25 0.04 -0.37 16 20 C -0.15 -0.02 10.03 -39.51 -0.40 -0.41 16 21 C -0.09 0.10 9.71 -39.59 -0.38 -0.29 16 22 C -0.14 0.59 6.87 -25.92 -0.18 0.41 16 23 C -0.09 0.12 9.21 -41.21 -0.38 -0.26 16 24 C -0.21 0.41 11.23 29.04 0.33 0.73 16 25 S 0.17 -0.26 20.87 -107.50 -2.24 -2.50 16 26 H 0.39 0.16 8.23 45.56 0.38 0.54 16 27 H 0.15 0.01 7.96 -51.93 -0.41 -0.41 16 28 H -0.23 -0.32 7.11 56.52 0.40 0.08 16 29 H -0.24 -0.13 7.11 56.52 0.40 0.27 16 30 H 0.42 -1.42 8.77 -34.47 -0.30 -1.72 16 31 H 0.10 -0.34 6.32 -51.92 -0.33 -0.67 16 32 H 0.08 -0.13 8.14 -51.93 -0.42 -0.55 16 33 H 0.13 -0.49 6.67 -52.48 -0.35 -0.84 16 34 H 0.14 -0.20 8.06 -52.49 -0.42 -0.62 16 35 H 0.14 -0.15 8.06 -52.48 -0.42 -0.57 16 36 H 0.13 -0.39 8.05 -52.49 -0.42 -0.81 16 37 H 0.08 -0.38 8.14 -51.93 -0.42 -0.80 16 38 H 0.10 -0.49 7.72 -51.93 -0.40 -0.89 16 39 H 0.15 -0.57 5.27 -52.49 -0.28 -0.84 16 40 H 0.18 -0.77 8.06 -52.49 -0.42 -1.20 16 LS Contribution 356.96 15.07 5.38 5.38 Total: 0.00 -9.60 356.96 -13.20 -22.80 By element: Atomic # 1 Polarization: -6.36 SS G_CDS: -4.22 Total: -10.58 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -3.67 Total: -2.36 kcal Atomic # 7 Polarization: 1.90 SS G_CDS: -0.02 Total: 1.87 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: -2.71 Total: -12.79 kcal Atomic # 9 Polarization: -0.41 SS G_CDS: 0.04 Total: -0.37 kcal Atomic # 14 Polarization: -0.70 SS G_CDS: -5.31 Total: -6.02 kcal Atomic # 16 Polarization: 4.75 SS G_CDS: -2.69 Total: 2.06 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -9.60 -13.20 -22.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10466354_14772022.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.600 kcal (2) G-P(sol) polarization free energy of solvation -9.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds