Wall clock time and date at job start Mon Mar 8 2021 09:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86299 * 109.47135 * 2 1 4 4 C 1.50706 * 109.47086 * 119.99584 * 2 1 3 5 5 C 1.33388 * 125.19909 * 39.28782 * 4 2 1 6 6 S 1.76200 * 122.54085 * 359.97438 * 5 4 2 7 7 O 1.42092 * 106.40340 * 278.78739 * 6 5 4 8 8 O 1.42102 * 106.40236 * 51.70790 * 6 5 4 9 9 N 1.65606 * 107.21813 * 165.24834 * 6 5 4 10 10 C 1.46497 * 120.00012 * 66.22492 * 9 6 5 11 11 H 1.09000 * 112.84968 * 346.87388 * 10 9 6 12 12 C 1.53774 * 113.61290 * 118.18532 * 10 9 6 13 13 C 1.53778 * 87.08398 * 89.11609 * 12 10 9 14 14 H 1.08995 * 113.61366 * 270.88213 * 13 12 10 15 15 C 1.50699 * 113.61605 * 139.97963 * 13 12 10 16 16 C 1.38246 * 119.97616 * 322.23400 * 15 13 12 17 17 C 1.38196 * 120.02713 * 179.72567 * 16 15 13 18 18 C 1.38458 * 119.97099 * 0.56351 * 17 16 15 19 19 F 1.35109 * 120.02341 * 179.67806 * 18 17 16 20 20 C 1.38456 * 119.95333 * 359.70772 * 18 17 16 21 21 C 1.38201 * 119.97131 * 359.97438 * 20 18 17 22 22 C 1.53780 * 87.08188 * 25.43201 * 13 12 10 23 23 C 1.38428 * 114.91903 * 179.97438 * 5 4 2 24 24 C 1.33384 * 114.92120 * 359.97438 * 23 5 4 25 25 S 1.75876 * 125.20330 * 218.98161 * 4 2 1 26 26 H 0.96706 * 113.99883 * 295.98010 * 1 2 3 27 27 H 1.08992 * 109.47190 * 239.99885 * 2 1 3 28 28 H 1.48503 * 109.99848 * 299.99752 * 3 2 1 29 29 H 1.48497 * 110.00344 * 61.31882 * 3 2 1 30 30 H 0.97001 * 119.99827 * 246.22558 * 9 6 5 31 31 H 1.09007 * 113.61406 * 203.66669 * 12 10 9 32 32 H 1.09004 * 113.61847 * 334.56210 * 12 10 9 33 33 H 1.08005 * 119.98429 * 359.97190 * 16 15 13 34 34 H 1.07998 * 120.01221 * 180.24433 * 17 16 15 35 35 H 1.08005 * 120.01939 * 179.97438 * 20 18 17 36 36 H 1.07997 * 119.98438 * 180.02562 * 21 20 18 37 37 H 1.08997 * 113.61204 * 220.01967 * 22 13 12 38 38 H 1.08996 * 113.69076 * 89.12902 * 22 13 12 39 39 H 1.08001 * 122.53400 * 179.97438 * 23 5 4 40 40 H 1.07998 * 125.20700 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7103 1.2306 5 6 1.3923 -1.8111 1.7569 6 16 -0.0206 -2.6007 1.0604 7 8 -1.1528 -1.8754 1.5197 8 8 0.2689 -2.7994 -0.3166 9 7 -0.1240 -4.1079 1.7387 10 6 -0.4107 -4.2495 3.1684 11 1 -0.3101 -3.3120 3.7152 12 6 -1.7209 -4.9989 3.4625 13 6 -0.8921 -6.2941 3.4461 14 1 -0.8104 -6.7476 2.4583 15 6 -1.2919 -7.2803 4.5131 16 6 -1.6589 -6.8298 5.7675 17 6 -2.0312 -7.7329 6.7451 18 6 -2.0253 -9.0901 6.4713 19 9 -2.3828 -9.9744 7.4282 20 6 -1.6522 -9.5406 5.2163 21 6 -1.2866 -8.6351 4.2383 22 6 0.3208 -5.4298 3.8294 23 6 2.0269 -2.2861 2.8917 24 6 3.0816 -1.5714 3.2866 25 16 3.3225 -0.2191 2.1879 26 1 -0.3933 0.3870 0.7942 27 1 1.7923 -0.5138 -0.8899 28 1 1.5615 2.4678 -1.2086 29 1 1.5879 2.4586 1.2242 30 1 0.0053 -4.8969 1.1895 31 1 -2.1477 -4.7659 4.4382 32 1 -2.4503 -4.9369 2.6548 33 1 -1.6585 -5.7713 5.9824 34 1 -2.3217 -7.3804 7.7237 35 1 -1.6468 -10.5991 5.0017 36 1 -0.9959 -8.9862 3.2592 37 1 1.2397 -5.7157 3.3178 38 1 0.4536 -5.3140 4.9050 39 1 1.6932 -3.1685 3.4175 40 1 3.6960 -1.7915 4.1471 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10466354_14772022.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:12:43 Heat of formation + Delta-G solvation = -52.664732 kcal Electronic energy + Delta-G solvation = -28771.249176 eV Core-core repulsion = 24494.036795 eV Total energy + Delta-G solvation = -4277.212382 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.054 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.90075 -41.19706 -39.74702 -39.09117 -38.21141 -37.80128 -36.85834 -34.24073 -32.09709 -31.81865 -31.05235 -27.59595 -26.62855 -25.94397 -24.48469 -24.04961 -22.69905 -21.69847 -20.73775 -20.10286 -19.47509 -18.74909 -18.46148 -17.93528 -17.32777 -17.17201 -17.08180 -16.71661 -16.62711 -16.60453 -16.06979 -15.62471 -15.47011 -15.37140 -14.92504 -14.48074 -14.37924 -14.19100 -14.18452 -14.09600 -13.90523 -13.77490 -13.47670 -13.23770 -13.12983 -13.07381 -12.97035 -12.85134 -12.55996 -12.30185 -12.13292 -11.77485 -11.72308 -11.58486 -11.20587 -11.14892 -10.51416 -10.10362 -10.04704 -9.70931 -9.45336 -5.19991 -0.74669 -0.50393 0.14860 0.29257 0.37775 0.67969 1.03511 1.18035 1.48653 1.80417 1.94433 2.58546 2.66510 2.98029 3.27562 3.32452 3.46348 3.54716 3.68495 3.70242 3.83961 3.97911 4.01052 4.03818 4.14858 4.18839 4.24399 4.34874 4.35678 4.44013 4.66883 4.73275 4.86378 4.91155 4.94265 5.01832 5.07674 5.10555 5.13921 5.16865 5.20717 5.30084 5.46725 5.65098 5.94762 6.01521 6.09536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.546 6.546 2 C -0.096 4.096 3 Si 0.765 3.235 4 C -0.126 4.126 5 C -0.674 4.674 6 S 2.728 3.272 7 O -0.978 6.978 8 O -0.984 6.984 9 N -1.091 6.091 10 C 0.112 3.888 11 H 0.115 0.885 12 C -0.150 4.150 13 C -0.071 4.071 14 H 0.109 0.891 15 C -0.079 4.079 16 C -0.089 4.089 17 C -0.158 4.158 18 C 0.062 3.938 19 F -0.157 7.157 20 C -0.161 4.161 21 C -0.092 4.092 22 C -0.130 4.130 23 C -0.101 4.101 24 C -0.205 4.205 25 S 0.195 5.805 26 H 0.394 0.606 27 H 0.148 0.852 28 H -0.267 1.267 29 H -0.258 1.258 30 H 0.429 0.571 31 H 0.109 0.891 32 H 0.069 0.931 33 H 0.157 0.843 34 H 0.144 0.856 35 H 0.140 0.860 36 H 0.150 0.850 37 H 0.093 0.907 38 H 0.114 0.886 39 H 0.176 0.824 40 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.949 0.734 3.474 7.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.205 4.205 3 Si 0.663 3.337 4 C -0.247 4.247 5 C -0.776 4.776 6 S 2.816 3.184 7 O -0.968 6.968 8 O -0.974 6.974 9 N -0.853 5.853 10 C 0.005 3.995 11 H 0.133 0.867 12 C -0.189 4.189 13 C -0.090 4.090 14 H 0.127 0.873 15 C -0.079 4.079 16 C -0.107 4.107 17 C -0.177 4.177 18 C 0.043 3.957 19 F -0.136 7.136 20 C -0.180 4.180 21 C -0.110 4.110 22 C -0.169 4.169 23 C -0.128 4.128 24 C -0.341 4.341 25 S 0.459 5.541 26 H 0.245 0.755 27 H 0.165 0.835 28 H -0.192 1.192 29 H -0.183 1.183 30 H 0.266 0.734 31 H 0.127 0.873 32 H 0.088 0.912 33 H 0.175 0.825 34 H 0.161 0.839 35 H 0.158 0.842 36 H 0.168 0.832 37 H 0.112 0.888 38 H 0.133 0.867 39 H 0.193 0.807 40 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 7.306 2.967 2.392 8.240 hybrid contribution -1.840 -2.176 0.899 2.988 sum 5.466 0.790 3.291 6.429 Atomic orbital electron populations 1.86655 1.17849 1.83610 1.47503 1.25496 0.83739 1.14002 0.97221 0.94442 0.88870 0.70386 0.80016 1.25046 1.01011 0.97974 1.00684 1.29745 1.25950 1.10282 1.11605 1.00805 0.73285 0.72326 0.72004 1.93539 1.48694 1.72145 1.82398 1.93543 1.85836 1.85541 1.32501 1.55164 1.87385 1.24593 1.18145 1.21938 0.97518 1.00621 0.79459 0.86698 1.23666 0.96741 0.94710 1.03815 1.21598 0.97262 0.92644 0.97471 0.87276 1.19978 0.98856 0.94012 0.95092 1.21162 0.97022 1.00744 0.91724 1.21384 1.03115 0.91028 1.02162 1.18140 1.02792 0.87758 0.86967 1.91472 1.89862 1.68772 1.63477 1.21371 1.02441 1.02016 0.92182 1.21213 0.97865 0.92346 0.99565 1.23542 0.97519 0.93045 1.02758 1.20031 0.95969 1.02287 0.94508 1.26354 1.03173 0.99243 1.05303 1.84136 1.24311 1.27475 1.18145 0.75451 0.83505 1.19161 1.18317 0.73421 0.87265 0.91200 0.82542 0.83857 0.84221 0.83248 0.88798 0.86745 0.80701 0.77843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -4.10 9.82 -125.27 -1.23 -5.33 16 2 C -0.10 -0.25 2.36 71.24 0.17 -0.09 16 3 Si 0.77 -1.18 31.25 68.60 2.14 0.96 16 4 C -0.13 -0.15 5.70 24.59 0.14 -0.01 16 5 C -0.67 -0.82 5.72 21.22 0.12 -0.70 16 6 S 2.73 12.61 4.16 -56.49 -0.24 12.37 16 7 O -0.98 -9.62 16.33 -120.63 -1.97 -11.59 16 8 O -0.98 -11.54 17.05 -123.07 -2.10 -13.64 16 9 N -1.09 4.06 5.50 -167.20 -0.92 3.14 16 10 C 0.11 -0.80 2.78 45.52 0.13 -0.67 16 11 H 0.12 -1.00 7.12 -2.39 -0.02 -1.01 16 12 C -0.15 0.92 7.25 31.12 0.23 1.14 16 13 C -0.07 0.55 3.80 -11.02 -0.04 0.51 16 14 H 0.11 -0.98 8.05 -2.39 -0.02 -1.00 16 15 C -0.08 0.35 5.29 -19.86 -0.11 0.24 16 16 C -0.09 0.37 8.59 22.26 0.19 0.56 16 17 C -0.16 0.04 10.03 22.31 0.22 0.26 16 18 C 0.06 0.23 7.30 22.37 0.16 0.39 16 19 F -0.16 -1.19 17.27 44.97 0.78 -0.41 16 20 C -0.16 -0.12 10.03 22.31 0.22 0.10 16 21 C -0.09 0.26 9.71 22.26 0.22 0.47 16 22 C -0.13 1.39 6.87 31.12 0.21 1.60 16 23 C -0.10 0.44 9.21 21.22 0.20 0.63 16 24 C -0.21 1.29 11.23 66.72 0.75 2.04 16 25 S 0.19 -0.86 20.87 -56.49 -1.18 -2.04 16 26 H 0.39 1.19 8.23 -74.05 -0.61 0.58 16 27 H 0.15 0.28 7.96 -2.39 -0.02 0.26 16 28 H -0.27 -1.15 7.11 99.48 0.71 -0.44 16 29 H -0.26 -0.30 7.11 99.48 0.71 0.41 16 30 H 0.43 -2.99 8.77 -96.74 -0.85 -3.84 16 31 H 0.11 -0.90 6.32 -2.38 -0.02 -0.92 16 32 H 0.07 -0.21 8.14 -2.38 -0.02 -0.23 16 33 H 0.16 -1.47 6.67 -2.91 -0.02 -1.49 16 34 H 0.14 -0.39 8.06 -2.91 -0.02 -0.41 16 35 H 0.14 -0.18 8.06 -2.91 -0.02 -0.20 16 36 H 0.15 -1.03 8.05 -2.91 -0.02 -1.06 16 37 H 0.09 -1.14 8.14 -2.39 -0.02 -1.16 16 38 H 0.11 -1.49 7.72 -2.39 -0.02 -1.50 16 39 H 0.18 -1.74 5.27 -2.91 -0.02 -1.75 16 40 H 0.20 -2.54 8.06 -2.91 -0.02 -2.56 16 Total: 0.00 -24.15 356.96 -2.20 -26.35 By element: Atomic # 1 Polarization: -16.01 SS G_CDS: -0.30 Total: -16.32 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: 2.81 Total: 6.50 kcal Atomic # 7 Polarization: 4.06 SS G_CDS: -0.92 Total: 3.14 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -5.30 Total: -30.56 kcal Atomic # 9 Polarization: -1.19 SS G_CDS: 0.78 Total: -0.41 kcal Atomic # 14 Polarization: -1.18 SS G_CDS: 2.14 Total: 0.96 kcal Atomic # 16 Polarization: 11.75 SS G_CDS: -1.41 Total: 10.33 kcal Total: -24.15 -2.20 -26.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10466354_14772022.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.312 kcal (2) G-P(sol) polarization free energy of solvation -24.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds