Wall clock time and date at job start Mon Mar 8 2021 09:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42893 * 1 3 3 Si 1.86304 * 109.47098 * 2 1 4 4 C 1.50704 * 109.47587 * 240.00406 * 2 1 3 5 5 C 1.33388 * 125.19756 * 300.28458 * 4 2 1 6 6 C 1.38425 * 114.91719 * 180.20443 * 5 4 2 7 7 S 1.76200 * 122.53924 * 179.75909 * 6 5 4 8 8 O 1.42097 * 106.40384 * 156.20086 * 7 6 5 9 9 O 1.42103 * 106.40051 * 23.27957 * 7 6 5 10 10 N 1.65603 * 107.22160 * 269.74315 * 7 6 5 11 11 C 1.46500 * 119.99954 * 64.99564 * 10 7 6 12 12 H 1.09002 * 112.85221 * 344.67073 * 11 10 7 13 13 C 1.53785 * 113.68813 * 115.94094 * 11 10 7 14 14 C 1.53777 * 87.08241 * 89.12417 * 13 11 10 15 15 H 1.08994 * 113.61814 * 270.88533 * 14 13 11 16 16 C 1.50702 * 113.69032 * 139.98725 * 14 13 11 17 17 C 1.38238 * 119.97425 * 322.19880 * 16 14 13 18 18 C 1.38210 * 120.02391 * 179.72280 * 17 16 14 19 19 C 1.38449 * 119.97130 * 0.52062 * 18 17 16 20 20 F 1.35104 * 120.02575 * 179.72598 * 19 18 17 21 21 C 1.38458 * 119.95312 * 359.74975 * 19 18 17 22 22 C 1.38202 * 119.97189 * 359.97438 * 21 19 18 23 23 C 1.53781 * 113.61339 * 213.47602 * 11 10 7 24 24 C 1.33385 * 114.92099 * 359.49942 * 6 5 4 25 25 S 1.75881 * 125.20665 * 119.97483 * 4 2 1 26 26 H 0.96708 * 113.99886 * 60.00511 * 1 2 3 27 27 H 1.09003 * 109.47226 * 119.99980 * 2 1 3 28 28 H 1.48509 * 109.99839 * 60.00048 * 3 2 1 29 29 H 1.48501 * 110.00352 * 181.31370 * 3 2 1 30 30 H 1.07996 * 122.54459 * 359.97260 * 5 4 2 31 31 H 0.96994 * 119.99581 * 245.00191 * 10 7 6 32 32 H 1.08999 * 113.61060 * 203.67840 * 13 11 10 33 33 H 1.08997 * 113.61198 * 334.57634 * 13 11 10 34 34 H 1.08002 * 119.99383 * 359.97118 * 17 16 14 35 35 H 1.07999 * 120.00593 * 180.29314 * 18 17 16 36 36 H 1.07998 * 120.01801 * 180.02562 * 21 19 18 37 37 H 1.08003 * 119.98608 * 179.97438 * 22 21 19 38 38 H 1.09000 * 113.61578 * 25.34726 * 23 11 10 39 39 H 1.09001 * 113.61682 * 156.17306 * 23 11 10 40 40 H 1.08002 * 125.20500 * 180.24596 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7103 -1.2305 5 6 1.6695 -1.9795 -1.5464 6 6 2.2447 -2.4173 -2.7270 7 16 2.0353 -4.0590 -3.3315 8 8 2.2493 -4.0002 -4.7350 9 8 0.8369 -4.5517 -2.7480 10 7 3.2684 -4.9720 -2.7084 11 6 3.3546 -5.1980 -1.2635 12 1 2.7284 -4.5146 -0.6900 13 6 3.1895 -6.6722 -0.8578 14 6 4.7125 -6.8066 -1.0234 15 1 5.0195 -7.0796 -2.0329 16 6 5.3640 -7.6570 0.0366 17 6 4.9168 -7.5950 1.3432 18 6 5.5099 -8.3786 2.3150 19 6 6.5593 -9.2179 1.9815 20 9 7.1434 -9.9803 2.9317 21 6 7.0100 -9.2750 0.6736 22 6 6.4117 -8.4947 -0.2976 23 6 4.7974 -5.2973 -0.7405 24 6 2.9650 -1.5006 -3.3750 25 16 2.9464 0.0096 -2.4735 26 1 -0.3933 0.4417 -0.7652 27 1 1.7923 -0.5138 0.8900 28 1 1.5614 2.4679 1.2086 29 1 3.5345 1.7704 -0.0320 30 1 1.0583 -2.6183 -0.9263 31 1 3.9336 -5.3570 -3.3000 32 1 2.8482 -6.8070 0.1686 33 1 2.6186 -7.2612 -1.5756 34 1 4.1011 -6.9370 1.6040 35 1 5.1572 -8.3334 3.3348 36 1 7.8283 -9.9296 0.4122 37 1 6.7634 -8.5388 -1.3178 38 1 5.5245 -4.7766 -1.3636 39 1 4.8959 -5.0550 0.3176 40 1 3.4811 -1.6611 -4.3100 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_10466354_15065232.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:12:49 Heat of formation + Delta-G solvation = -57.455518 kcal Electronic energy + Delta-G solvation = -28149.105807 eV Core-core repulsion = 23871.685681 eV Total energy + Delta-G solvation = -4277.420126 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.054 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -49.80457 -41.35320 -39.57956 -39.16778 -38.23489 -37.61125 -36.88760 -34.34460 -32.19869 -31.90016 -31.16677 -27.32281 -26.87078 -26.06732 -24.99657 -24.15448 -22.80193 -21.50266 -20.78341 -20.14226 -19.31330 -18.85424 -18.55035 -17.91372 -17.67031 -17.41281 -17.09191 -16.86341 -16.51451 -16.43051 -16.03448 -15.59066 -15.52492 -15.21094 -15.00858 -14.61780 -14.51052 -14.35983 -14.21753 -14.15511 -13.98546 -13.94681 -13.70511 -13.23056 -13.15919 -13.07989 -12.99917 -12.95907 -12.55848 -12.29831 -12.26973 -11.93699 -11.89744 -11.66102 -11.40586 -10.83077 -10.64790 -10.25102 -10.13973 -9.94651 -9.51896 -5.30203 -0.81687 -0.54545 0.08999 0.19649 0.23545 0.50296 0.90494 1.08134 1.43317 1.75596 1.94860 2.49224 2.66828 3.13641 3.24386 3.27665 3.32016 3.47196 3.47970 3.55955 3.68398 3.75271 3.79170 3.88338 3.90682 4.02008 4.14901 4.19567 4.26554 4.31432 4.47733 4.55618 4.56767 4.74808 4.78736 4.81827 4.87257 4.93324 4.98034 4.98952 5.11714 5.18047 5.25087 5.49607 5.77096 5.86357 6.34955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.532 6.532 2 C -0.026 4.026 3 Si 0.654 3.346 4 C -0.228 4.228 5 C -0.046 4.046 6 C -0.688 4.688 7 S 2.710 3.290 8 O -0.954 6.954 9 O -0.944 6.944 10 N -1.096 6.096 11 C 0.127 3.873 12 H 0.104 0.896 13 C -0.144 4.144 14 C -0.073 4.073 15 H 0.102 0.898 16 C -0.082 4.082 17 C -0.089 4.089 18 C -0.151 4.151 19 C 0.094 3.906 20 F -0.140 7.140 21 C -0.151 4.151 22 C -0.086 4.086 23 C -0.136 4.136 24 C -0.082 4.082 25 S 0.159 5.841 26 H 0.382 0.618 27 H 0.126 0.874 28 H -0.231 1.231 29 H -0.237 1.237 30 H 0.157 0.843 31 H 0.420 0.580 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.134 0.866 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.132 0.868 38 H 0.080 0.920 39 H 0.098 0.902 40 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.335 3.733 -0.829 4.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.338 6.338 2 C -0.140 4.140 3 Si 0.553 3.447 4 C -0.346 4.346 5 C -0.074 4.074 6 C -0.787 4.787 7 S 2.796 3.204 8 O -0.944 6.944 9 O -0.934 6.934 10 N -0.855 5.855 11 C 0.019 3.981 12 H 0.122 0.878 13 C -0.184 4.184 14 C -0.091 4.091 15 H 0.120 0.880 16 C -0.082 4.082 17 C -0.106 4.106 18 C -0.169 4.169 19 C 0.075 3.925 20 F -0.119 7.119 21 C -0.170 4.170 22 C -0.104 4.104 23 C -0.175 4.175 24 C -0.221 4.221 25 S 0.423 5.577 26 H 0.230 0.770 27 H 0.143 0.857 28 H -0.154 1.154 29 H -0.161 1.161 30 H 0.175 0.825 31 H 0.255 0.745 32 H 0.117 0.883 33 H 0.102 0.898 34 H 0.152 0.848 35 H 0.154 0.846 36 H 0.153 0.847 37 H 0.150 0.850 38 H 0.099 0.901 39 H 0.116 0.884 40 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 2.765 5.273 -0.435 5.970 hybrid contribution 0.347 -1.765 0.599 1.896 sum 3.112 3.508 0.163 4.692 Atomic orbital electron populations 1.86544 1.16338 1.81675 1.49212 1.24440 0.85434 1.09133 0.94972 0.95000 0.82063 0.77620 0.90031 1.25086 1.07693 0.98968 1.02849 1.19621 0.98124 0.95245 0.94456 1.30039 1.14219 1.25996 1.08458 1.01650 0.73110 0.72750 0.72876 1.93622 1.85535 1.86844 1.28445 1.93627 1.42993 1.78035 1.78724 1.55380 1.48226 1.67265 1.14637 1.21632 0.98601 0.98167 0.79745 0.87825 1.23593 0.95318 0.96132 1.03311 1.21565 0.95767 0.94078 0.97722 0.88024 1.19756 0.96480 0.97619 0.94380 1.20887 0.99453 0.98410 0.91893 1.21185 0.96745 0.97756 1.01243 1.17780 0.94909 0.93564 0.86267 1.91523 1.83127 1.73738 1.63464 1.21199 1.02185 1.02002 0.91600 1.20946 0.95169 0.94964 0.99370 1.23468 0.96226 0.95221 1.02633 1.25908 0.98078 0.95988 1.02116 1.84416 1.46746 1.12986 1.13569 0.76998 0.85696 1.15351 1.16126 0.82513 0.74457 0.88307 0.89837 0.84834 0.84626 0.84654 0.84986 0.90125 0.88398 0.79702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.40 12.86 -35.23 -0.45 -0.05 16 2 C -0.03 0.04 2.96 36.01 0.11 0.15 16 3 Si 0.65 -1.35 30.97 -169.99 -5.26 -6.61 16 4 C -0.23 0.25 5.72 -36.00 -0.21 0.04 16 5 C -0.05 0.02 9.46 -41.21 -0.39 -0.37 16 6 C -0.69 0.39 5.86 -41.21 -0.24 0.14 16 7 S 2.71 0.69 5.74 -107.50 -0.62 0.07 16 8 O -0.95 -2.80 17.64 -57.17 -1.01 -3.81 16 9 O -0.94 -3.24 17.39 -57.17 -0.99 -4.23 16 10 N -1.10 2.94 5.73 -4.20 -0.02 2.92 16 11 C 0.13 -0.38 4.43 -67.12 -0.30 -0.68 16 12 H 0.10 -0.38 7.96 -51.93 -0.41 -0.79 16 13 C -0.14 0.38 7.26 -25.92 -0.19 0.19 16 14 C -0.07 0.22 3.81 -90.95 -0.35 -0.12 16 15 H 0.10 -0.39 8.09 -51.93 -0.42 -0.81 16 16 C -0.08 0.12 5.29 -104.62 -0.55 -0.44 16 17 C -0.09 0.11 8.60 -39.59 -0.34 -0.23 16 18 C -0.15 -0.01 10.03 -39.51 -0.40 -0.41 16 19 C 0.09 0.14 7.30 -39.42 -0.29 -0.15 16 20 F -0.14 -0.43 17.27 2.25 0.04 -0.39 16 21 C -0.15 -0.03 10.03 -39.51 -0.40 -0.43 16 22 C -0.09 0.09 9.71 -39.59 -0.38 -0.30 16 23 C -0.14 0.51 7.32 -25.91 -0.19 0.32 16 24 C -0.08 0.12 10.70 29.04 0.31 0.43 16 25 S 0.16 -0.31 20.58 -107.50 -2.21 -2.52 16 26 H 0.38 -1.66 8.70 45.56 0.40 -1.27 16 27 H 0.13 -0.22 7.96 -51.93 -0.41 -0.64 16 28 H -0.23 -0.17 7.11 56.52 0.40 0.24 16 29 H -0.24 0.05 7.11 56.52 0.40 0.45 16 30 H 0.16 -0.10 7.96 -52.49 -0.42 -0.51 16 31 H 0.42 -1.86 8.82 -34.47 -0.30 -2.17 16 32 H 0.10 -0.33 6.33 -51.93 -0.33 -0.66 16 33 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 34 H 0.13 -0.44 6.68 -52.49 -0.35 -0.79 16 35 H 0.14 -0.16 8.06 -52.49 -0.42 -0.59 16 36 H 0.14 -0.14 8.06 -52.49 -0.42 -0.56 16 37 H 0.13 -0.38 8.05 -52.48 -0.42 -0.81 16 38 H 0.08 -0.32 8.14 -51.93 -0.42 -0.75 16 39 H 0.10 -0.39 7.72 -51.93 -0.40 -0.79 16 40 H 0.19 -0.62 8.00 -52.49 -0.42 -1.04 16 LS Contribution 369.53 15.07 5.57 5.57 Total: 0.00 -9.82 369.53 -13.15 -22.97 By element: Atomic # 1 Polarization: -7.67 SS G_CDS: -4.38 Total: -12.05 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -3.80 Total: -1.84 kcal Atomic # 7 Polarization: 2.94 SS G_CDS: -0.02 Total: 2.92 kcal Atomic # 8 Polarization: -5.64 SS G_CDS: -2.46 Total: -8.10 kcal Atomic # 9 Polarization: -0.43 SS G_CDS: 0.04 Total: -0.39 kcal Atomic # 14 Polarization: -1.35 SS G_CDS: -5.26 Total: -6.61 kcal Atomic # 16 Polarization: 0.38 SS G_CDS: -2.83 Total: -2.45 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -9.82 -13.15 -22.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10466354_15065232.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.489 kcal (2) G-P(sol) polarization free energy of solvation -9.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds