Wall clock time and date at job start Mon Mar 8 2021 09:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42893 * 1 3 3 Si 1.86304 * 109.47098 * 2 1 4 4 C 1.50704 * 109.47587 * 240.00406 * 2 1 3 5 5 C 1.33388 * 125.19756 * 300.28458 * 4 2 1 6 6 C 1.38425 * 114.91719 * 180.20443 * 5 4 2 7 7 S 1.76200 * 122.53924 * 179.75909 * 6 5 4 8 8 O 1.42097 * 106.40384 * 156.20086 * 7 6 5 9 9 O 1.42103 * 106.40051 * 23.27957 * 7 6 5 10 10 N 1.65603 * 107.22160 * 269.74315 * 7 6 5 11 11 C 1.46500 * 119.99954 * 64.99564 * 10 7 6 12 12 H 1.09002 * 112.85221 * 344.67073 * 11 10 7 13 13 C 1.53785 * 113.68813 * 115.94094 * 11 10 7 14 14 C 1.53777 * 87.08241 * 89.12417 * 13 11 10 15 15 H 1.08994 * 113.61814 * 270.88533 * 14 13 11 16 16 C 1.50702 * 113.69032 * 139.98725 * 14 13 11 17 17 C 1.38238 * 119.97425 * 322.19880 * 16 14 13 18 18 C 1.38210 * 120.02391 * 179.72280 * 17 16 14 19 19 C 1.38449 * 119.97130 * 0.52062 * 18 17 16 20 20 F 1.35104 * 120.02575 * 179.72598 * 19 18 17 21 21 C 1.38458 * 119.95312 * 359.74975 * 19 18 17 22 22 C 1.38202 * 119.97189 * 359.97438 * 21 19 18 23 23 C 1.53781 * 113.61339 * 213.47602 * 11 10 7 24 24 C 1.33385 * 114.92099 * 359.49942 * 6 5 4 25 25 S 1.75881 * 125.20665 * 119.97483 * 4 2 1 26 26 H 0.96708 * 113.99886 * 60.00511 * 1 2 3 27 27 H 1.09003 * 109.47226 * 119.99980 * 2 1 3 28 28 H 1.48509 * 109.99839 * 60.00048 * 3 2 1 29 29 H 1.48501 * 110.00352 * 181.31370 * 3 2 1 30 30 H 1.07996 * 122.54459 * 359.97260 * 5 4 2 31 31 H 0.96994 * 119.99581 * 245.00191 * 10 7 6 32 32 H 1.08999 * 113.61060 * 203.67840 * 13 11 10 33 33 H 1.08997 * 113.61198 * 334.57634 * 13 11 10 34 34 H 1.08002 * 119.99383 * 359.97118 * 17 16 14 35 35 H 1.07999 * 120.00593 * 180.29314 * 18 17 16 36 36 H 1.07998 * 120.01801 * 180.02562 * 21 19 18 37 37 H 1.08003 * 119.98608 * 179.97438 * 22 21 19 38 38 H 1.09000 * 113.61578 * 25.34726 * 23 11 10 39 39 H 1.09001 * 113.61682 * 156.17306 * 23 11 10 40 40 H 1.08002 * 125.20500 * 180.24596 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7103 -1.2305 5 6 1.6695 -1.9795 -1.5464 6 6 2.2447 -2.4173 -2.7270 7 16 2.0353 -4.0590 -3.3315 8 8 2.2493 -4.0002 -4.7350 9 8 0.8369 -4.5517 -2.7480 10 7 3.2684 -4.9720 -2.7084 11 6 3.3546 -5.1980 -1.2635 12 1 2.7284 -4.5146 -0.6900 13 6 3.1895 -6.6722 -0.8578 14 6 4.7125 -6.8066 -1.0234 15 1 5.0195 -7.0796 -2.0329 16 6 5.3640 -7.6570 0.0366 17 6 4.9168 -7.5950 1.3432 18 6 5.5099 -8.3786 2.3150 19 6 6.5593 -9.2179 1.9815 20 9 7.1434 -9.9803 2.9317 21 6 7.0100 -9.2750 0.6736 22 6 6.4117 -8.4947 -0.2976 23 6 4.7974 -5.2973 -0.7405 24 6 2.9650 -1.5006 -3.3750 25 16 2.9464 0.0096 -2.4735 26 1 -0.3933 0.4417 -0.7652 27 1 1.7923 -0.5138 0.8900 28 1 1.5614 2.4679 1.2086 29 1 3.5345 1.7704 -0.0320 30 1 1.0583 -2.6183 -0.9263 31 1 3.9336 -5.3570 -3.3000 32 1 2.8482 -6.8070 0.1686 33 1 2.6186 -7.2612 -1.5756 34 1 4.1011 -6.9370 1.6040 35 1 5.1572 -8.3334 3.3348 36 1 7.8283 -9.9296 0.4122 37 1 6.7634 -8.5388 -1.3178 38 1 5.5245 -4.7766 -1.3636 39 1 4.8959 -5.0550 0.3176 40 1 3.4811 -1.6611 -4.3100 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10466354_15065232.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:12:48 Heat of formation + Delta-G solvation = -57.697642 kcal Electronic energy + Delta-G solvation = -28149.116306 eV Core-core repulsion = 23871.685681 eV Total energy + Delta-G solvation = -4277.430625 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.054 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.92006 -41.17088 -39.47584 -39.04587 -38.34647 -37.50647 -37.01402 -34.19962 -32.11625 -31.79267 -31.06707 -27.20877 -26.60804 -25.90574 -24.91012 -24.06825 -22.70197 -21.42558 -20.64423 -20.00691 -19.20122 -18.82994 -18.56177 -17.81666 -17.60189 -17.35442 -16.99184 -16.75111 -16.62537 -16.31621 -16.00539 -15.48771 -15.43638 -15.07568 -14.90290 -14.49255 -14.39075 -14.27382 -14.12328 -14.07763 -13.91935 -13.89052 -13.48450 -13.32637 -13.22293 -13.08360 -12.98102 -12.90818 -12.54487 -12.18510 -12.15070 -11.76155 -11.73925 -11.57085 -11.18098 -10.70494 -10.46557 -10.13550 -10.06610 -9.81565 -9.47079 -5.15758 -0.78509 -0.44659 0.13067 0.27242 0.36132 0.61755 0.98191 1.20982 1.54427 1.85817 2.04265 2.56755 2.68953 3.21298 3.30566 3.43552 3.50890 3.65537 3.68400 3.72151 3.83100 3.93168 3.96149 4.01370 4.10111 4.24401 4.26195 4.33161 4.40133 4.42200 4.65544 4.73938 4.84887 4.92353 4.93381 5.01102 5.06032 5.07226 5.10284 5.13907 5.18975 5.28282 5.45729 5.64055 5.92997 6.05010 6.64670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.030 4.030 3 Si 0.723 3.277 4 C -0.233 4.233 5 C -0.057 4.057 6 C -0.692 4.692 7 S 2.727 3.273 8 O -0.984 6.984 9 O -0.981 6.981 10 N -1.085 6.085 11 C 0.121 3.879 12 H 0.110 0.890 13 C -0.150 4.150 14 C -0.071 4.071 15 H 0.112 0.888 16 C -0.080 4.080 17 C -0.090 4.090 18 C -0.159 4.159 19 C 0.062 3.938 20 F -0.157 7.157 21 C -0.161 4.161 22 C -0.091 4.091 23 C -0.128 4.128 24 C -0.085 4.085 25 S 0.186 5.814 26 H 0.396 0.604 27 H 0.127 0.873 28 H -0.272 1.272 29 H -0.258 1.258 30 H 0.154 0.846 31 H 0.429 0.571 32 H 0.105 0.895 33 H 0.073 0.927 34 H 0.154 0.846 35 H 0.142 0.858 36 H 0.141 0.859 37 H 0.152 0.848 38 H 0.088 0.912 39 H 0.104 0.896 40 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.701 4.745 -1.558 5.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.143 4.143 3 Si 0.626 3.374 4 C -0.351 4.351 5 C -0.085 4.085 6 C -0.793 4.793 7 S 2.816 3.184 8 O -0.974 6.974 9 O -0.971 6.971 10 N -0.847 5.847 11 C 0.013 3.987 12 H 0.127 0.873 13 C -0.189 4.189 14 C -0.089 4.089 15 H 0.130 0.870 16 C -0.080 4.080 17 C -0.108 4.108 18 C -0.178 4.178 19 C 0.044 3.956 20 F -0.136 7.136 21 C -0.179 4.179 22 C -0.109 4.109 23 C -0.167 4.167 24 C -0.224 4.224 25 S 0.449 5.551 26 H 0.247 0.753 27 H 0.144 0.856 28 H -0.197 1.197 29 H -0.183 1.183 30 H 0.172 0.828 31 H 0.267 0.733 32 H 0.124 0.876 33 H 0.092 0.908 34 H 0.172 0.828 35 H 0.160 0.840 36 H 0.159 0.841 37 H 0.169 0.831 38 H 0.107 0.893 39 H 0.122 0.878 40 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 3.123 6.258 -1.199 7.095 hybrid contribution 0.231 -2.022 0.850 2.205 sum 3.353 4.235 -0.349 5.414 Atomic orbital electron populations 1.86508 1.16737 1.82097 1.50368 1.24558 0.85250 1.09535 0.94970 0.94164 0.79626 0.75599 0.88053 1.25169 1.07809 0.98905 1.03191 1.19668 0.98529 0.95642 0.94706 1.29805 1.15221 1.25515 1.08798 1.00789 0.72772 0.72907 0.71951 1.93576 1.85991 1.87416 1.30443 1.93580 1.45311 1.79009 1.79157 1.55075 1.47723 1.66769 1.15101 1.21760 0.99472 0.98139 0.79284 0.87254 1.23660 0.95507 0.96210 1.03524 1.21624 0.95211 0.94309 0.97754 0.86963 1.19999 0.96044 0.97240 0.94727 1.21150 0.99681 0.98214 0.91739 1.21377 0.96550 0.97775 1.02097 1.18130 0.96168 0.94698 0.86650 1.91471 1.83576 1.74364 1.64142 1.21381 1.02607 1.02501 0.91454 1.21223 0.95129 0.94532 1.00011 1.23444 0.95644 0.94476 1.03130 1.26212 0.97562 0.96000 1.02598 1.84337 1.45856 1.12211 1.12659 0.75330 0.85626 1.19695 1.18348 0.82834 0.73289 0.87642 0.90779 0.82830 0.83969 0.84091 0.83053 0.89296 0.87779 0.78014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.94 12.86 -148.98 -1.92 -0.97 16 2 C -0.03 0.10 2.96 71.24 0.21 0.31 16 3 Si 0.72 -3.18 30.97 68.60 2.12 -1.06 16 4 C -0.23 0.65 5.72 24.59 0.14 0.79 16 5 C -0.06 0.06 9.46 21.22 0.20 0.26 16 6 C -0.69 1.03 5.86 21.22 0.12 1.15 16 7 S 2.73 1.94 5.74 -56.49 -0.32 1.61 16 8 O -0.98 -6.01 17.64 -128.00 -2.26 -8.27 16 9 O -0.98 -7.53 17.39 -128.00 -2.23 -9.75 16 10 N -1.09 6.40 5.73 -167.19 -0.96 5.44 16 11 C 0.12 -0.84 4.43 45.52 0.20 -0.64 16 12 H 0.11 -0.86 7.96 -2.39 -0.02 -0.88 16 13 C -0.15 0.90 7.26 31.12 0.23 1.12 16 14 C -0.07 0.52 3.81 -11.01 -0.04 0.48 16 15 H 0.11 -1.05 8.09 -2.39 -0.02 -1.07 16 16 C -0.08 0.30 5.29 -19.86 -0.11 0.19 16 17 C -0.09 0.28 8.60 22.26 0.19 0.47 16 18 C -0.16 -0.11 10.03 22.31 0.22 0.11 16 19 C 0.06 0.26 7.30 22.37 0.16 0.43 16 20 F -0.16 -1.26 17.27 44.97 0.78 -0.48 16 21 C -0.16 -0.17 10.03 22.31 0.22 0.05 16 22 C -0.09 0.23 9.71 22.26 0.22 0.45 16 23 C -0.13 1.16 7.32 31.12 0.23 1.38 16 24 C -0.08 0.34 10.70 66.72 0.71 1.05 16 25 S 0.19 -0.94 20.58 -56.49 -1.16 -2.10 16 26 H 0.40 -3.62 8.70 -74.05 -0.64 -4.26 16 27 H 0.13 -0.48 7.96 -2.39 -0.02 -0.50 16 28 H -0.27 -0.63 7.11 99.48 0.71 0.08 16 29 H -0.26 0.25 7.11 99.48 0.71 0.96 16 30 H 0.15 -0.12 7.96 -2.91 -0.02 -0.15 16 31 H 0.43 -4.17 8.82 -96.75 -0.85 -5.02 16 32 H 0.11 -0.79 6.33 -2.39 -0.02 -0.80 16 33 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 34 H 0.15 -1.19 6.68 -2.91 -0.02 -1.21 16 35 H 0.14 -0.23 8.06 -2.91 -0.02 -0.26 16 36 H 0.14 -0.17 8.06 -2.91 -0.02 -0.19 16 37 H 0.15 -1.07 8.05 -2.91 -0.02 -1.09 16 38 H 0.09 -0.90 8.14 -2.39 -0.02 -0.92 16 39 H 0.10 -1.02 7.72 -2.39 -0.02 -1.04 16 40 H 0.20 -1.62 8.00 -2.91 -0.02 -1.65 16 Total: 0.00 -22.88 369.53 -3.37 -26.26 By element: Atomic # 1 Polarization: -17.94 SS G_CDS: -0.35 Total: -18.29 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: 2.92 Total: 7.62 kcal Atomic # 7 Polarization: 6.40 SS G_CDS: -0.96 Total: 5.44 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: -6.40 Total: -18.99 kcal Atomic # 9 Polarization: -1.26 SS G_CDS: 0.78 Total: -0.48 kcal Atomic # 14 Polarization: -3.18 SS G_CDS: 2.12 Total: -1.06 kcal Atomic # 16 Polarization: 1.00 SS G_CDS: -1.49 Total: -0.49 kcal Total: -22.88 -3.37 -26.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10466354_15065232.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.441 kcal (2) G-P(sol) polarization free energy of solvation -22.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds