Wall clock time and date at job start Mon Mar 8 2021 09:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33388 * 125.20312 * 2 1 4 4 C 1.50699 * 122.53847 * 359.94055 * 3 2 1 5 5 O 1.42895 * 109.47486 * 67.02016 * 4 3 2 6 6 Si 1.86300 * 109.47225 * 307.01634 * 4 3 2 7 7 C 1.38425 * 114.92099 * 179.97438 * 3 2 1 8 8 S 1.76193 * 122.53951 * 179.97438 * 7 3 2 9 9 O 1.42102 * 106.40504 * 161.81969 * 8 7 3 10 10 O 1.42103 * 106.40500 * 28.89505 * 8 7 3 11 11 N 1.65600 * 107.21927 * 275.35957 * 8 7 3 12 12 C 1.46503 * 120.00034 * 64.99519 * 11 8 7 13 13 H 1.09001 * 112.90870 * 346.26319 * 12 11 8 14 14 C 1.53785 * 113.61024 * 117.50540 * 12 11 8 15 15 C 1.53954 * 87.10944 * 89.19172 * 14 12 11 16 16 H 1.09002 * 113.60981 * 270.83897 * 15 14 12 17 17 C 1.50702 * 113.66781 * 139.89175 * 15 14 12 18 18 C 1.38254 * 119.97175 * 322.27147 * 17 15 14 19 19 C 1.38197 * 120.02493 * 179.72769 * 18 17 15 20 20 C 1.38458 * 119.97060 * 0.56893 * 19 18 17 21 21 F 1.35103 * 120.02192 * 179.68518 * 20 19 18 22 22 C 1.38462 * 119.95400 * 359.70802 * 20 19 18 23 23 C 1.38196 * 119.96957 * 359.97438 * 22 20 19 24 24 C 1.53778 * 87.02192 * 25.36260 * 15 14 12 25 25 C 1.33390 * 114.92047 * 0.24164 * 7 3 2 26 26 C 1.50694 * 125.20081 * 179.75816 * 25 7 3 27 27 S 1.75881 * 125.20308 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.47587 * 91.43124 * 1 2 3 29 29 H 1.09003 * 109.47621 * 211.43517 * 1 2 3 30 30 H 1.09003 * 109.47304 * 331.43328 * 1 2 3 31 31 H 1.09001 * 109.46925 * 187.01928 * 4 3 2 32 32 H 0.96700 * 113.99823 * 55.95698 * 5 4 3 33 33 H 1.48494 * 110.00352 * 308.46410 * 6 4 3 34 34 H 1.48502 * 109.99673 * 69.78397 * 6 4 3 35 35 H 0.96999 * 120.00573 * 245.00308 * 11 8 7 36 36 H 1.09007 * 113.61493 * 203.66764 * 14 12 11 37 37 H 1.08995 * 113.61890 * 334.48815 * 14 12 11 38 38 H 1.07998 * 119.98679 * 359.97438 * 18 17 15 39 39 H 1.08000 * 120.01331 * 180.25637 * 19 18 17 40 40 H 1.07998 * 120.01461 * 180.02562 * 22 20 19 41 41 H 1.07999 * 119.98767 * 179.97438 * 23 22 20 42 42 H 1.09000 * 113.61646 * 220.05103 * 24 15 14 43 43 H 1.09000 * 113.61775 * 89.23065 * 24 15 14 44 44 H 1.08997 * 109.47465 * 84.14270 * 26 25 7 45 45 H 1.08999 * 109.47146 * 204.14014 * 26 25 7 46 46 H 1.09001 * 109.47429 * 324.13881 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 1.7051 2.4846 -0.0013 5 8 1.0368 2.7270 1.2383 6 14 0.4924 2.6580 -1.4049 7 6 3.6379 0.8428 0.0006 8 16 4.8355 2.1352 0.0000 9 8 6.0582 1.5495 0.4261 10 8 4.2328 3.2412 0.6578 11 7 5.0608 2.5941 -1.5751 12 6 3.9618 3.2095 -2.3232 13 1 2.9967 3.0967 -1.8291 14 6 4.2563 4.6487 -2.7780 15 6 4.8543 4.0386 -4.0588 16 1 5.9165 3.8078 -3.9777 17 6 4.5148 4.8065 -5.3103 18 6 3.2615 5.3718 -5.4552 19 6 2.9509 6.0810 -6.5999 20 6 3.8916 6.2152 -7.6070 21 9 3.5869 6.9029 -8.7293 22 6 5.1446 5.6438 -7.4633 23 6 5.4550 4.9406 -6.3148 24 6 3.9399 2.8270 -3.8125 25 6 3.9750 -0.4477 -0.0041 26 6 5.3860 -0.9770 -0.0098 27 16 2.5209 -1.4371 0.0006 28 1 -0.3634 -0.0257 -1.0273 29 1 -0.3634 -0.8768 0.5360 30 1 -0.3634 0.9026 0.4914 31 1 2.5116 3.2071 -0.1267 32 1 1.5933 2.5934 2.0177 33 1 1.1186 2.2119 -2.6753 34 1 -0.7238 1.8522 -1.1277 35 1 5.9204 2.4553 -2.0026 36 1 3.3596 5.2425 -2.9563 37 1 4.9873 5.1630 -2.1542 38 1 2.5262 5.2625 -4.6717 39 1 1.9732 6.5260 -6.7111 40 1 5.8792 5.7482 -8.2480 41 1 6.4321 4.4944 -6.2026 42 1 4.4166 1.8699 -4.0244 43 1 2.9565 2.9212 -4.2731 44 1 5.7661 -1.0093 1.0113 45 1 5.3955 -1.9815 -0.4329 46 1 6.0169 -0.3231 -0.6118 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_10466354_15065288.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:12:54 Heat of formation + Delta-G solvation = -51.934430 kcal Electronic energy + Delta-G solvation = -33979.219773 eV Core-core repulsion = 29390.963822 eV Total energy + Delta-G solvation = -4588.255951 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 398.085 amu Computer time = 2.60 seconds Orbital eigenvalues (eV) -49.79197 -41.40416 -40.38473 -39.19673 -38.54044 -37.02606 -36.96675 -34.41408 -34.38497 -32.18817 -31.18746 -31.01730 -28.15905 -26.89680 -26.23721 -25.91381 -24.14755 -23.32093 -22.83870 -21.11896 -20.57163 -20.03756 -19.27399 -18.74407 -18.55694 -18.19386 -17.46542 -17.37153 -16.91118 -16.84146 -16.50192 -16.40043 -16.06550 -15.64528 -15.43590 -15.26977 -15.17890 -14.83129 -14.63297 -14.53799 -14.51196 -14.34574 -14.19800 -13.98735 -13.95698 -13.72310 -13.59025 -13.44146 -13.23783 -13.20549 -13.10036 -12.93694 -12.78899 -12.68104 -12.30025 -11.97571 -11.93269 -11.76265 -11.75226 -11.44689 -11.34388 -10.76840 -10.69481 -10.12825 -10.10986 -9.63921 -9.51129 -4.95319 -0.87152 -0.52799 0.09797 0.21002 0.26780 0.59435 0.75399 1.25910 1.53524 1.86032 1.89221 2.49854 2.55831 3.10478 3.22227 3.28970 3.34979 3.42342 3.46223 3.57799 3.66936 3.76255 3.79144 3.84864 3.89435 3.90588 3.98351 4.10704 4.14285 4.20693 4.30620 4.35183 4.38335 4.42174 4.51578 4.54613 4.55931 4.72475 4.76770 4.80283 4.86213 4.89680 4.92057 4.96437 4.98690 5.11711 5.12872 5.17242 5.24153 5.49883 5.71398 5.87430 6.57958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.170 4.170 3 C -0.080 4.080 4 C -0.093 4.093 5 O -0.526 6.526 6 Si 0.712 3.288 7 C -0.688 4.688 8 S 2.705 3.295 9 O -0.949 6.949 10 O -0.941 6.941 11 N -1.096 6.096 12 C 0.116 3.884 13 H 0.097 0.903 14 C -0.144 4.144 15 C -0.071 4.071 16 H 0.103 0.897 17 C -0.083 4.083 18 C -0.089 4.089 19 C -0.149 4.149 20 C 0.094 3.906 21 F -0.140 7.140 22 C -0.151 4.151 23 C -0.086 4.086 24 C -0.138 4.138 25 C -0.047 4.047 26 C -0.111 4.111 27 S 0.160 5.840 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.371 0.629 33 H -0.241 1.241 34 H -0.229 1.229 35 H 0.421 0.579 36 H 0.103 0.897 37 H 0.086 0.914 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.135 0.865 41 H 0.132 0.868 42 H 0.081 0.919 43 H 0.099 0.901 44 H 0.102 0.898 45 H 0.081 0.919 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.320 -1.734 -1.995 2.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.288 4.288 3 C -0.091 4.091 4 C -0.204 4.204 5 O -0.332 6.332 6 Si 0.609 3.391 7 C -0.787 4.787 8 S 2.792 3.208 9 O -0.939 6.939 10 O -0.931 6.931 11 N -0.855 5.855 12 C 0.008 3.992 13 H 0.115 0.885 14 C -0.183 4.183 15 C -0.090 4.090 16 H 0.121 0.879 17 C -0.083 4.083 18 C -0.107 4.107 19 C -0.168 4.168 20 C 0.075 3.925 21 F -0.118 7.118 22 C -0.170 4.170 23 C -0.104 4.104 24 C -0.177 4.177 25 C -0.168 4.168 26 C -0.169 4.169 27 S 0.426 5.574 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.219 0.781 33 H -0.166 1.166 34 H -0.153 1.153 35 H 0.257 0.743 36 H 0.121 0.879 37 H 0.105 0.895 38 H 0.153 0.847 39 H 0.155 0.845 40 H 0.153 0.847 41 H 0.150 0.850 42 H 0.099 0.901 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.100 0.900 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.352 -3.233 -2.218 4.147 hybrid contribution 1.281 -0.136 0.220 1.307 sum -0.070 -3.369 -1.998 3.918 Atomic orbital electron populations 1.20821 0.87072 1.04883 1.03097 1.24487 1.00429 0.95088 1.08793 1.18620 0.90220 0.97135 1.03076 1.25793 1.06322 0.91400 0.96856 1.86629 1.40661 1.91606 1.14274 0.94174 0.80090 0.90790 0.74083 1.29542 1.11826 1.13492 1.23803 1.01707 0.73124 0.73524 0.72399 1.93617 1.42588 1.78406 1.79331 1.93566 1.77662 1.50052 1.71832 1.55361 1.21064 1.75977 1.33057 1.21866 0.89037 0.94855 0.93418 0.88523 1.23648 1.02747 0.95809 0.96076 1.21567 1.00229 0.95476 0.91677 0.87922 1.19732 0.93976 0.98820 0.95746 1.20912 0.96441 0.96311 0.97013 1.21190 0.99968 1.01867 0.93800 1.17789 0.94785 0.95932 0.83982 1.91523 1.93547 1.77194 1.49584 1.21193 0.95809 1.00150 0.99862 1.20932 0.99538 0.97621 0.92319 1.23503 1.01268 0.98654 0.94322 1.24620 1.00794 0.94997 0.96439 1.20922 0.88039 1.02269 1.05683 1.84456 0.95197 1.08530 1.69190 0.90404 0.90456 0.88205 0.88116 0.78143 1.16567 1.15299 0.74295 0.87875 0.89522 0.84657 0.84497 0.84687 0.85028 0.90059 0.88214 0.87990 0.90042 0.88347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.04 8.08 36.00 0.29 0.25 16 2 C -0.17 -0.23 6.10 -36.01 -0.22 -0.45 16 3 C -0.08 -0.13 4.43 -106.25 -0.47 -0.60 16 4 C -0.09 -0.10 1.72 36.00 0.06 -0.04 16 5 O -0.53 -0.89 11.71 -35.23 -0.41 -1.30 16 6 Si 0.71 -0.50 27.83 -169.99 -4.73 -5.23 16 7 C -0.69 -0.88 5.86 -41.21 -0.24 -1.12 16 8 S 2.71 2.88 5.32 -107.50 -0.57 2.30 16 9 O -0.95 -2.63 14.90 -57.17 -0.85 -3.48 16 10 O -0.94 -3.00 14.65 -57.17 -0.84 -3.83 16 11 N -1.10 2.08 5.73 -4.19 -0.02 2.06 16 12 C 0.12 -0.24 4.35 -67.11 -0.29 -0.53 16 13 H 0.10 -0.16 2.50 -51.93 -0.13 -0.29 16 14 C -0.14 0.40 7.26 -25.83 -0.19 0.21 16 15 C -0.07 0.22 3.81 -90.87 -0.35 -0.13 16 16 H 0.10 -0.42 8.07 -51.93 -0.42 -0.83 16 17 C -0.08 0.14 5.29 -104.61 -0.55 -0.42 16 18 C -0.09 0.15 8.59 -39.59 -0.34 -0.19 16 19 C -0.15 0.06 10.03 -39.52 -0.40 -0.34 16 20 C 0.09 0.11 7.30 -39.42 -0.29 -0.18 16 21 F -0.14 -0.39 17.27 2.25 0.04 -0.35 16 22 C -0.15 0.01 10.03 -39.51 -0.40 -0.39 16 23 C -0.09 0.11 9.71 -39.60 -0.38 -0.28 16 24 C -0.14 0.40 7.32 -25.92 -0.19 0.21 16 25 C -0.05 -0.03 6.50 -36.01 -0.23 -0.27 16 26 C -0.11 0.10 8.88 36.00 0.32 0.42 16 27 S 0.16 0.06 23.31 -107.50 -2.51 -2.45 16 28 H 0.08 -0.01 6.83 -51.93 -0.35 -0.36 16 29 H 0.08 -0.05 8.14 -51.93 -0.42 -0.48 16 30 H 0.10 0.09 5.36 -51.93 -0.28 -0.19 16 31 H 0.10 0.09 3.20 -51.93 -0.17 -0.07 16 32 H 0.37 0.07 9.03 45.56 0.41 0.48 16 33 H -0.24 0.16 7.08 56.52 0.40 0.56 16 34 H -0.23 -0.11 5.03 56.52 0.28 0.18 16 35 H 0.42 -1.73 8.80 -34.48 -0.30 -2.04 16 36 H 0.10 -0.41 6.32 -51.93 -0.33 -0.74 16 37 H 0.09 -0.21 8.14 -51.93 -0.42 -0.63 16 38 H 0.14 -0.53 6.67 -52.49 -0.35 -0.88 16 39 H 0.14 -0.25 8.06 -52.49 -0.42 -0.67 16 40 H 0.14 -0.17 8.06 -52.49 -0.42 -0.59 16 41 H 0.13 -0.41 8.05 -52.49 -0.42 -0.83 16 42 H 0.08 -0.26 8.14 -51.93 -0.42 -0.68 16 43 H 0.10 -0.30 7.71 -51.93 -0.40 -0.70 16 44 H 0.10 -0.08 8.14 -51.93 -0.42 -0.50 16 45 H 0.08 -0.22 8.14 -51.93 -0.42 -0.64 16 46 H 0.10 -0.13 6.48 -51.93 -0.34 -0.46 16 LS Contribution 383.96 15.07 5.79 5.79 Total: 0.00 -7.39 383.96 -13.33 -20.72 By element: Atomic # 1 Polarization: -5.04 SS G_CDS: -5.35 Total: -10.39 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -3.87 Total: -3.84 kcal Atomic # 7 Polarization: 2.08 SS G_CDS: -0.02 Total: 2.06 kcal Atomic # 8 Polarization: -6.51 SS G_CDS: -2.10 Total: -8.61 kcal Atomic # 9 Polarization: -0.39 SS G_CDS: 0.04 Total: -0.35 kcal Atomic # 14 Polarization: -0.50 SS G_CDS: -4.73 Total: -5.23 kcal Atomic # 16 Polarization: 2.94 SS G_CDS: -3.08 Total: -0.14 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -7.39 -13.33 -20.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10466354_15065288.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.214 kcal (2) G-P(sol) polarization free energy of solvation -7.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.60 seconds