Wall clock time and date at job start Mon Mar 8 2021 09:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33388 * 125.20312 * 2 1 4 4 C 1.50699 * 122.53847 * 359.94055 * 3 2 1 5 5 O 1.42895 * 109.47486 * 67.02016 * 4 3 2 6 6 Si 1.86300 * 109.47225 * 307.01634 * 4 3 2 7 7 C 1.38425 * 114.92099 * 179.97438 * 3 2 1 8 8 S 1.76193 * 122.53951 * 179.97438 * 7 3 2 9 9 O 1.42102 * 106.40504 * 161.81969 * 8 7 3 10 10 O 1.42103 * 106.40500 * 28.89505 * 8 7 3 11 11 N 1.65600 * 107.21927 * 275.35957 * 8 7 3 12 12 C 1.46503 * 120.00034 * 64.99519 * 11 8 7 13 13 H 1.09001 * 112.90870 * 346.26319 * 12 11 8 14 14 C 1.53785 * 113.61024 * 117.50540 * 12 11 8 15 15 C 1.53954 * 87.10944 * 89.19172 * 14 12 11 16 16 H 1.09002 * 113.60981 * 270.83897 * 15 14 12 17 17 C 1.50702 * 113.66781 * 139.89175 * 15 14 12 18 18 C 1.38254 * 119.97175 * 322.27147 * 17 15 14 19 19 C 1.38197 * 120.02493 * 179.72769 * 18 17 15 20 20 C 1.38458 * 119.97060 * 0.56893 * 19 18 17 21 21 F 1.35103 * 120.02192 * 179.68518 * 20 19 18 22 22 C 1.38462 * 119.95400 * 359.70802 * 20 19 18 23 23 C 1.38196 * 119.96957 * 359.97438 * 22 20 19 24 24 C 1.53778 * 87.02192 * 25.36260 * 15 14 12 25 25 C 1.33390 * 114.92047 * 0.24164 * 7 3 2 26 26 C 1.50694 * 125.20081 * 179.75816 * 25 7 3 27 27 S 1.75881 * 125.20308 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.47587 * 91.43124 * 1 2 3 29 29 H 1.09003 * 109.47621 * 211.43517 * 1 2 3 30 30 H 1.09003 * 109.47304 * 331.43328 * 1 2 3 31 31 H 1.09001 * 109.46925 * 187.01928 * 4 3 2 32 32 H 0.96700 * 113.99823 * 55.95698 * 5 4 3 33 33 H 1.48494 * 110.00352 * 308.46410 * 6 4 3 34 34 H 1.48502 * 109.99673 * 69.78397 * 6 4 3 35 35 H 0.96999 * 120.00573 * 245.00308 * 11 8 7 36 36 H 1.09007 * 113.61493 * 203.66764 * 14 12 11 37 37 H 1.08995 * 113.61890 * 334.48815 * 14 12 11 38 38 H 1.07998 * 119.98679 * 359.97438 * 18 17 15 39 39 H 1.08000 * 120.01331 * 180.25637 * 19 18 17 40 40 H 1.07998 * 120.01461 * 180.02562 * 22 20 19 41 41 H 1.07999 * 119.98767 * 179.97438 * 23 22 20 42 42 H 1.09000 * 113.61646 * 220.05103 * 24 15 14 43 43 H 1.09000 * 113.61775 * 89.23065 * 24 15 14 44 44 H 1.08997 * 109.47465 * 84.14270 * 26 25 7 45 45 H 1.08999 * 109.47146 * 204.14014 * 26 25 7 46 46 H 1.09001 * 109.47429 * 324.13881 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 1.7051 2.4846 -0.0013 5 8 1.0368 2.7270 1.2383 6 14 0.4924 2.6580 -1.4049 7 6 3.6379 0.8428 0.0006 8 16 4.8355 2.1352 0.0000 9 8 6.0582 1.5495 0.4261 10 8 4.2328 3.2412 0.6578 11 7 5.0608 2.5941 -1.5751 12 6 3.9618 3.2095 -2.3232 13 1 2.9967 3.0967 -1.8291 14 6 4.2563 4.6487 -2.7780 15 6 4.8543 4.0386 -4.0588 16 1 5.9165 3.8078 -3.9777 17 6 4.5148 4.8065 -5.3103 18 6 3.2615 5.3718 -5.4552 19 6 2.9509 6.0810 -6.5999 20 6 3.8916 6.2152 -7.6070 21 9 3.5869 6.9029 -8.7293 22 6 5.1446 5.6438 -7.4633 23 6 5.4550 4.9406 -6.3148 24 6 3.9399 2.8270 -3.8125 25 6 3.9750 -0.4477 -0.0041 26 6 5.3860 -0.9770 -0.0098 27 16 2.5209 -1.4371 0.0006 28 1 -0.3634 -0.0257 -1.0273 29 1 -0.3634 -0.8768 0.5360 30 1 -0.3634 0.9026 0.4914 31 1 2.5116 3.2071 -0.1267 32 1 1.5933 2.5934 2.0177 33 1 1.1186 2.2119 -2.6753 34 1 -0.7238 1.8522 -1.1277 35 1 5.9204 2.4553 -2.0026 36 1 3.3596 5.2425 -2.9563 37 1 4.9873 5.1630 -2.1542 38 1 2.5262 5.2625 -4.6717 39 1 1.9732 6.5260 -6.7111 40 1 5.8792 5.7482 -8.2480 41 1 6.4321 4.4944 -6.2026 42 1 4.4166 1.8699 -4.0244 43 1 2.9565 2.9212 -4.2731 44 1 5.7661 -1.0093 1.0113 45 1 5.3955 -1.9815 -0.4329 46 1 6.0169 -0.3231 -0.6118 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10466354_15065288.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:12:53 Heat of formation + Delta-G solvation = -49.037520 kcal Electronic energy + Delta-G solvation = -33979.094154 eV Core-core repulsion = 29390.963822 eV Total energy + Delta-G solvation = -4588.130332 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 398.085 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -49.87248 -41.22345 -40.40933 -39.08155 -38.63875 -37.15137 -37.04957 -34.40242 -34.28473 -32.06759 -31.08298 -30.99675 -28.16056 -26.64445 -26.18923 -25.82948 -24.02825 -23.33151 -22.73151 -21.10163 -20.47908 -20.00134 -19.29493 -18.72330 -18.56775 -18.24354 -17.38920 -17.32663 -16.86453 -16.78745 -16.57688 -16.39388 -16.08037 -15.55769 -15.41352 -15.25807 -15.09792 -14.82696 -14.53401 -14.47280 -14.37748 -14.31292 -14.12809 -13.97277 -13.91182 -13.57161 -13.55321 -13.47074 -13.36197 -13.12435 -13.10421 -12.91880 -12.78967 -12.70193 -12.13176 -11.88837 -11.80974 -11.69578 -11.64682 -11.47374 -11.18066 -10.77527 -10.56961 -10.13130 -10.01532 -9.66634 -9.43388 -4.88192 -0.90574 -0.56703 0.17250 0.25180 0.32508 0.56050 0.70911 1.29011 1.59080 1.88386 1.94443 2.51549 2.60988 3.07512 3.35293 3.36784 3.43087 3.56068 3.64649 3.65092 3.76343 3.83907 3.90957 3.96807 3.98777 4.01275 4.10657 4.14853 4.23287 4.36129 4.38026 4.43414 4.47438 4.49021 4.58903 4.69167 4.81377 4.82759 4.89350 4.92623 4.98874 5.02182 5.07747 5.09747 5.10146 5.14751 5.23539 5.32678 5.42950 5.66221 5.95611 5.98437 6.54376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.186 4.186 3 C -0.088 4.088 4 C -0.110 4.110 5 O -0.536 6.536 6 Si 0.755 3.245 7 C -0.698 4.698 8 S 2.717 3.283 9 O -0.970 6.970 10 O -0.966 6.966 11 N -1.084 6.084 12 C 0.107 3.893 13 H 0.093 0.907 14 C -0.146 4.146 15 C -0.066 4.066 16 H 0.115 0.885 17 C -0.081 4.081 18 C -0.090 4.090 19 C -0.157 4.157 20 C 0.063 3.937 21 F -0.157 7.157 22 C -0.162 4.162 23 C -0.091 4.091 24 C -0.135 4.135 25 C -0.051 4.051 26 C -0.117 4.117 27 S 0.174 5.826 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.374 0.626 33 H -0.237 1.237 34 H -0.248 1.248 35 H 0.432 0.568 36 H 0.116 0.884 37 H 0.083 0.917 38 H 0.159 0.841 39 H 0.146 0.854 40 H 0.140 0.860 41 H 0.150 0.850 42 H 0.087 0.913 43 H 0.104 0.896 44 H 0.100 0.900 45 H 0.100 0.900 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.139 -2.407 -2.158 3.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.304 4.304 3 C -0.098 4.098 4 C -0.219 4.219 5 O -0.342 6.342 6 Si 0.651 3.349 7 C -0.797 4.797 8 S 2.805 3.195 9 O -0.960 6.960 10 O -0.956 6.956 11 N -0.846 5.846 12 C -0.001 4.001 13 H 0.110 0.890 14 C -0.185 4.185 15 C -0.084 4.084 16 H 0.133 0.867 17 C -0.081 4.081 18 C -0.108 4.108 19 C -0.175 4.175 20 C 0.044 3.956 21 F -0.136 7.136 22 C -0.181 4.181 23 C -0.108 4.108 24 C -0.174 4.174 25 C -0.172 4.172 26 C -0.175 4.175 27 S 0.441 5.559 28 H 0.100 0.900 29 H 0.105 0.895 30 H 0.111 0.889 31 H 0.119 0.881 32 H 0.222 0.778 33 H -0.162 1.162 34 H -0.173 1.173 35 H 0.271 0.729 36 H 0.134 0.866 37 H 0.102 0.898 38 H 0.177 0.823 39 H 0.164 0.836 40 H 0.157 0.843 41 H 0.168 0.832 42 H 0.105 0.895 43 H 0.122 0.878 44 H 0.118 0.882 45 H 0.119 0.881 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.142 -3.903 -2.372 4.708 hybrid contribution 1.233 0.034 0.321 1.274 sum 0.091 -3.869 -2.051 4.380 Atomic orbital electron populations 1.20843 0.86684 1.04980 1.03436 1.24678 1.00974 0.95569 1.09156 1.18731 0.90426 0.97445 1.03217 1.26135 1.07226 0.91300 0.97245 1.86598 1.41174 1.91683 1.14782 0.93726 0.78181 0.89979 0.73016 1.29553 1.11770 1.13776 1.24578 1.01155 0.72462 0.73044 0.72874 1.93585 1.43468 1.78702 1.80248 1.93535 1.78026 1.51028 1.73030 1.55078 1.21818 1.75652 1.32089 1.21998 0.88715 0.95548 0.93801 0.88957 1.23735 1.03355 0.95460 0.95966 1.21596 1.00989 0.95113 0.90743 0.86682 1.19947 0.93830 0.98322 0.95998 1.21216 0.97061 0.95513 0.97008 1.21395 1.00160 1.02093 0.93883 1.18150 0.95980 0.97251 0.84222 1.91471 1.93754 1.77798 1.50560 1.21364 0.95612 1.00436 1.00670 1.21194 1.00532 0.97244 0.91868 1.23519 1.01624 0.98948 0.93351 1.24874 1.01579 0.94968 0.95775 1.21052 0.87179 1.03445 1.05830 1.84348 0.94752 1.07914 1.68892 0.89972 0.89532 0.88946 0.88120 0.77805 1.16197 1.17269 0.72946 0.86567 0.89820 0.82342 0.83633 0.84262 0.83187 0.89482 0.87759 0.88174 0.88140 0.87952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.10 8.08 71.23 0.58 0.48 16 2 C -0.19 -0.52 6.10 24.59 0.15 -0.37 16 3 C -0.09 -0.30 4.43 -20.92 -0.09 -0.39 16 4 C -0.11 -0.28 1.72 71.24 0.12 -0.16 16 5 O -0.54 -2.25 11.71 -148.98 -1.75 -3.99 16 6 Si 0.75 -1.31 27.83 68.60 1.91 0.59 16 7 C -0.70 -1.88 5.86 21.22 0.12 -1.75 16 8 S 2.72 6.34 5.32 -56.49 -0.30 6.04 16 9 O -0.97 -5.64 14.90 -128.00 -1.91 -7.54 16 10 O -0.97 -6.77 14.65 -128.00 -1.87 -8.65 16 11 N -1.08 4.81 5.73 -167.18 -0.96 3.85 16 12 C 0.11 -0.55 4.35 45.52 0.20 -0.35 16 13 H 0.09 -0.38 2.50 -2.39 -0.01 -0.39 16 14 C -0.15 1.01 7.26 31.18 0.23 1.23 16 15 C -0.07 0.51 3.81 -10.96 -0.04 0.47 16 16 H 0.12 -1.17 8.07 -2.39 -0.02 -1.19 16 17 C -0.08 0.37 5.29 -19.86 -0.11 0.27 16 18 C -0.09 0.40 8.59 22.26 0.19 0.59 16 19 C -0.16 0.11 10.03 22.31 0.22 0.33 16 20 C 0.06 0.20 7.30 22.38 0.16 0.36 16 21 F -0.16 -1.13 17.27 44.97 0.78 -0.35 16 22 C -0.16 -0.05 10.03 22.31 0.22 0.17 16 23 C -0.09 0.30 9.71 22.26 0.22 0.51 16 24 C -0.14 1.01 7.32 31.12 0.23 1.24 16 25 C -0.05 -0.06 6.50 24.59 0.16 0.10 16 26 C -0.12 0.25 8.88 71.23 0.63 0.89 16 27 S 0.17 0.08 23.31 -56.49 -1.32 -1.24 16 28 H 0.08 -0.01 6.83 -2.39 -0.02 -0.03 16 29 H 0.09 -0.12 8.14 -2.39 -0.02 -0.14 16 30 H 0.09 0.23 5.36 -2.39 -0.01 0.21 16 31 H 0.10 0.22 3.20 -2.39 -0.01 0.21 16 32 H 0.37 0.63 9.03 -74.06 -0.67 -0.03 16 33 H -0.24 0.60 7.08 99.48 0.70 1.31 16 34 H -0.25 -0.27 5.03 99.48 0.50 0.23 16 35 H 0.43 -3.96 8.80 -96.74 -0.85 -4.81 16 36 H 0.12 -1.13 6.32 -2.38 -0.02 -1.14 16 37 H 0.08 -0.49 8.14 -2.39 -0.02 -0.51 16 38 H 0.16 -1.54 6.67 -2.91 -0.02 -1.56 16 39 H 0.15 -0.50 8.06 -2.91 -0.02 -0.52 16 40 H 0.14 -0.23 8.06 -2.91 -0.02 -0.26 16 41 H 0.15 -1.15 8.05 -2.91 -0.02 -1.17 16 42 H 0.09 -0.72 8.14 -2.39 -0.02 -0.74 16 43 H 0.10 -0.83 7.71 -2.39 -0.02 -0.85 16 44 H 0.10 -0.16 8.14 -2.39 -0.02 -0.18 16 45 H 0.10 -0.64 8.14 -2.39 -0.02 -0.66 16 46 H 0.10 -0.31 6.48 -2.39 -0.02 -0.32 16 Total: 0.00 -17.36 383.96 -2.83 -20.19 By element: Atomic # 1 Polarization: -11.91 SS G_CDS: -0.61 Total: -12.53 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: 3.20 Total: 3.62 kcal Atomic # 7 Polarization: 4.81 SS G_CDS: -0.96 Total: 3.85 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -5.53 Total: -20.18 kcal Atomic # 9 Polarization: -1.13 SS G_CDS: 0.78 Total: -0.35 kcal Atomic # 14 Polarization: -1.31 SS G_CDS: 1.91 Total: 0.59 kcal Atomic # 16 Polarization: 6.42 SS G_CDS: -1.62 Total: 4.80 kcal Total: -17.36 -2.83 -20.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10466354_15065288.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.846 kcal (2) G-P(sol) polarization free energy of solvation -17.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds