Wall clock time and date at job start Mon Mar 8 2021 09:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86302 * 109.47404 * 2 1 4 4 C 1.50706 * 109.46721 * 119.99772 * 2 1 3 5 5 C 1.38211 * 120.00160 * 75.73712 * 4 2 1 6 6 S 1.76201 * 119.99740 * 359.97438 * 5 4 2 7 7 O 1.42105 * 106.40430 * 52.94437 * 6 5 4 8 8 O 1.42103 * 106.40200 * 280.02357 * 6 5 4 9 9 N 1.65602 * 107.21493 * 166.48473 * 6 5 4 10 10 C 1.46505 * 119.99888 * 67.27713 * 9 6 5 11 11 H 1.08992 * 112.84636 * 350.60707 * 10 9 6 12 12 C 1.53780 * 113.61252 * 121.80718 * 10 9 6 13 13 C 1.53780 * 87.07927 * 89.11350 * 12 10 9 14 14 H 1.08997 * 113.61506 * 270.79366 * 13 12 10 15 15 C 1.50700 * 113.61197 * 139.97990 * 13 12 10 16 16 C 1.38247 * 119.97678 * 119.99814 * 15 13 12 17 17 C 1.38193 * 120.02723 * 179.97438 * 16 15 13 18 18 C 1.38461 * 119.97731 * 359.97438 * 17 16 15 19 19 F 1.35100 * 120.02622 * 179.97438 * 18 17 16 20 20 C 1.38460 * 119.94590 * 0.25679 * 18 17 16 21 21 C 1.38202 * 119.97016 * 359.51222 * 20 18 17 22 22 C 1.53774 * 87.08335 * 25.42969 * 13 12 10 23 23 C 1.38257 * 119.99851 * 180.25424 * 5 4 2 24 24 C 1.38208 * 120.00045 * 359.51012 * 23 5 4 25 25 C 1.38255 * 120.00169 * 0.44174 * 24 23 5 26 26 C 1.38213 * 119.99614 * 359.81519 * 25 24 23 27 27 H 0.96698 * 114.00151 * 185.20849 * 1 2 3 28 28 H 1.08992 * 109.47274 * 239.99837 * 2 1 3 29 29 H 1.48502 * 110.00061 * 58.67415 * 3 2 1 30 30 H 1.48495 * 110.00332 * 179.97438 * 3 2 1 31 31 H 0.97000 * 119.99779 * 247.26820 * 9 6 5 32 32 H 1.08989 * 113.61628 * 334.56177 * 12 10 9 33 33 H 1.09005 * 113.68756 * 203.67119 * 12 10 9 34 34 H 1.08006 * 119.98368 * 359.97438 * 16 15 13 35 35 H 1.08003 * 120.01224 * 180.02562 * 17 16 15 36 36 H 1.07994 * 120.01383 * 179.74803 * 20 18 17 37 37 H 1.08004 * 119.98263 * 180.25636 * 21 20 18 38 38 H 1.09000 * 113.61345 * 89.11955 * 22 13 12 39 39 H 1.09002 * 113.61495 * 220.01529 * 22 13 12 40 40 H 1.08002 * 119.99678 * 179.72218 * 23 5 4 41 41 H 1.07998 * 120.00053 * 180.27565 * 24 23 5 42 42 H 1.08000 * 119.99890 * 179.83442 * 25 24 23 43 43 H 1.08006 * 119.99669 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9312 -0.7104 1.2306 5 6 1.8835 -2.0899 1.3000 6 16 1.2348 -3.0180 -0.0500 7 8 1.9391 -2.5889 -1.2072 8 8 -0.1803 -2.9584 0.0653 9 7 1.6577 -4.6003 0.1949 10 6 1.0801 -5.3480 1.3145 11 1 0.5194 -4.7147 2.0019 12 6 0.3200 -6.6134 0.8834 13 6 1.6575 -7.3626 1.0035 14 1 2.2444 -7.3584 0.0850 15 6 1.5275 -8.7367 1.6084 16 6 1.9181 -9.8491 0.8864 17 6 1.7997 -11.1096 1.4403 18 6 1.2903 -11.2583 2.7192 19 9 1.1737 -12.4902 3.2615 20 6 0.8949 -10.1439 3.4396 21 6 1.0186 -8.8840 2.8853 22 6 2.0817 -6.2828 2.0129 23 6 2.3395 -2.7413 2.4311 24 6 2.8523 -2.0135 3.4882 25 6 2.9009 -0.6336 3.4184 26 6 2.4403 0.0178 2.2898 27 1 -0.3933 -0.8797 0.0802 28 1 1.7923 -0.5138 -0.8899 29 1 1.5354 2.4772 1.1920 30 1 3.5350 1.7702 0.0006 31 1 2.2877 -5.0321 -0.4031 32 1 -0.0641 -6.5661 -0.1355 33 1 -0.4300 -6.9405 1.6036 34 1 2.3158 -9.7329 -0.1110 35 1 2.1054 -11.9784 0.8762 36 1 0.4936 -10.2589 4.4355 37 1 0.7142 -8.0142 3.4487 38 1 1.8140 -6.5186 3.0428 39 1 3.1200 -5.9688 1.9057 40 1 2.2980 -3.8191 2.4871 41 1 3.2125 -2.5226 4.3699 42 1 3.2992 -0.0648 4.2456 43 1 2.4779 1.0959 2.2354 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_10466354_2726874.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:13:00 Heat of formation + Delta-G solvation = -58.992798 kcal Electronic energy + Delta-G solvation = -30355.141899 eV Core-core repulsion = 25988.502866 eV Total energy + Delta-G solvation = -4366.639034 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.098 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -49.84234 -41.50788 -40.88779 -39.31062 -38.38198 -37.92426 -36.92710 -34.59918 -32.95091 -32.62969 -32.24631 -31.25200 -27.06290 -27.03091 -26.18983 -24.63678 -24.21272 -23.20296 -22.81454 -21.14736 -20.48800 -19.59027 -18.89731 -18.60377 -18.21432 -17.50909 -17.41381 -17.16524 -17.05899 -16.61054 -16.55114 -16.36079 -16.09124 -15.66590 -15.57461 -15.28683 -15.17792 -14.69503 -14.60945 -14.29169 -14.10128 -14.05978 -13.81207 -13.79548 -13.72840 -13.45295 -13.27688 -13.24240 -13.15704 -13.05664 -12.36239 -12.20360 -12.09587 -12.01130 -11.91002 -11.56603 -11.53739 -11.03367 -10.84044 -10.64327 -10.24587 -10.18656 -9.56856 -4.86342 -0.90314 -0.49363 -0.08394 0.03983 0.15131 1.26655 1.54759 1.61423 1.85699 2.16963 2.31935 2.44076 3.08945 3.18364 3.19074 3.23717 3.26765 3.40824 3.49790 3.56948 3.62855 3.67843 3.68722 3.80298 3.83742 3.92134 3.94497 3.97739 4.13830 4.25020 4.25918 4.34248 4.36373 4.46337 4.54532 4.61519 4.68550 4.70115 4.80684 4.83201 4.92149 4.92833 5.04341 5.06819 5.09291 5.17805 5.43083 5.49116 5.61596 5.81625 6.40015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.530 6.530 2 C -0.150 4.150 3 Si 0.770 3.230 4 C -0.008 4.008 5 C -0.666 4.666 6 S 2.690 3.310 7 O -0.946 6.946 8 O -0.944 6.944 9 N -1.095 6.095 10 C 0.115 3.885 11 H 0.109 0.891 12 C -0.138 4.138 13 C -0.071 4.071 14 H 0.103 0.897 15 C -0.083 4.083 16 C -0.086 4.086 17 C -0.151 4.151 18 C 0.095 3.905 19 F -0.139 7.139 20 C -0.150 4.150 21 C -0.089 4.089 22 C -0.148 4.148 23 C -0.035 4.035 24 C -0.131 4.131 25 C -0.057 4.057 26 C -0.135 4.135 27 H 0.368 0.632 28 H 0.105 0.895 29 H -0.247 1.247 30 H -0.244 1.244 31 H 0.424 0.576 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.133 0.867 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.103 0.897 39 H 0.084 0.916 40 H 0.142 0.858 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.837 -0.497 1.978 3.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.339 6.339 2 C -0.257 4.257 3 Si 0.666 3.334 4 C -0.010 4.010 5 C -0.752 4.752 6 S 2.779 3.221 7 O -0.936 6.936 8 O -0.934 6.934 9 N -0.854 5.854 10 C 0.007 3.993 11 H 0.127 0.873 12 C -0.177 4.177 13 C -0.089 4.089 14 H 0.121 0.879 15 C -0.084 4.084 16 C -0.104 4.104 17 C -0.169 4.169 18 C 0.076 3.924 19 F -0.118 7.118 20 C -0.169 4.169 21 C -0.107 4.107 22 C -0.187 4.187 23 C -0.054 4.054 24 C -0.149 4.149 25 C -0.075 4.075 26 C -0.153 4.153 27 H 0.219 0.781 28 H 0.123 0.877 29 H -0.172 1.172 30 H -0.168 1.168 31 H 0.260 0.740 32 H 0.102 0.898 33 H 0.119 0.881 34 H 0.151 0.849 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.151 0.849 38 H 0.121 0.879 39 H 0.102 0.898 40 H 0.160 0.840 41 H 0.157 0.843 42 H 0.156 0.844 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.774 1.095 1.797 3.481 hybrid contribution 0.662 -2.165 1.346 2.634 sum 3.435 -1.070 3.142 4.777 Atomic orbital electron populations 1.86791 1.15535 1.34968 1.96566 1.26207 0.85878 1.17551 0.96061 0.92381 0.78387 0.75299 0.87311 1.19901 0.93612 0.91673 0.95826 1.30749 1.19097 1.06286 1.19059 1.02237 0.74375 0.72015 0.73483 1.93633 1.74452 1.79991 1.45545 1.93614 1.28021 1.85342 1.86446 1.55233 1.60577 1.29095 1.40523 1.21829 0.95789 0.93867 0.87782 0.87279 1.23514 0.96308 0.93924 1.03954 1.21539 0.98357 0.90042 0.99006 0.87894 1.19728 0.99455 0.94777 0.94401 1.20948 0.98438 0.91026 0.99947 1.21207 1.02112 0.99208 0.94412 1.17788 1.01510 0.80058 0.93059 1.91525 1.93855 1.40531 1.85889 1.21184 1.02734 0.91761 1.01230 1.20869 0.98280 0.96683 0.94855 1.23652 1.00228 0.95222 0.99604 1.21088 0.92838 1.00193 0.91282 1.21371 1.00048 0.94295 0.99212 1.21516 0.94024 0.94964 0.96995 1.21222 1.00096 1.00113 0.93863 0.78051 0.87725 1.17220 1.16808 0.74002 0.89752 0.88134 0.84941 0.84607 0.84594 0.84863 0.87866 0.89773 0.84043 0.84346 0.84414 0.84759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -2.24 12.68 -35.23 -0.45 -2.69 16 2 C -0.15 -0.46 2.10 36.01 0.08 -0.38 16 3 Si 0.77 0.55 30.43 -169.99 -5.17 -4.62 16 4 C -0.01 -0.02 5.22 -104.62 -0.55 -0.57 16 5 C -0.67 -0.87 5.78 -39.58 -0.23 -1.10 16 6 S 2.69 2.81 4.54 -107.50 -0.49 2.33 16 7 O -0.95 -3.35 15.80 -57.17 -0.90 -4.25 16 8 O -0.94 -3.00 15.45 -57.93 -0.89 -3.89 16 9 N -1.09 2.90 5.36 -4.20 -0.02 2.88 16 10 C 0.12 -0.42 2.69 -67.12 -0.18 -0.60 16 11 H 0.11 -0.45 7.37 -51.93 -0.38 -0.83 16 12 C -0.14 0.46 7.34 -25.92 -0.19 0.27 16 13 C -0.07 0.27 3.79 -90.96 -0.34 -0.07 16 14 H 0.10 -0.48 8.02 -51.93 -0.42 -0.89 16 15 C -0.08 0.18 5.29 -104.62 -0.55 -0.37 16 16 C -0.09 0.13 9.71 -39.59 -0.38 -0.25 16 17 C -0.15 0.04 10.03 -39.52 -0.40 -0.36 16 18 C 0.10 0.09 7.30 -39.42 -0.29 -0.20 16 19 F -0.14 -0.37 17.27 2.25 0.04 -0.33 16 20 C -0.15 0.09 10.03 -39.51 -0.40 -0.31 16 21 C -0.09 0.19 8.61 -39.59 -0.34 -0.15 16 22 C -0.15 0.72 6.40 -25.92 -0.17 0.56 16 23 C -0.04 0.04 9.16 -39.59 -0.36 -0.33 16 24 C -0.13 0.17 10.05 -39.59 -0.40 -0.22 16 25 C -0.06 0.02 10.05 -39.58 -0.40 -0.37 16 26 C -0.13 -0.22 8.66 -39.58 -0.34 -0.57 16 27 H 0.37 1.36 5.98 45.56 0.27 1.63 16 28 H 0.11 0.30 5.57 -51.93 -0.29 0.01 16 29 H -0.25 -0.51 6.79 56.52 0.38 -0.12 16 30 H -0.24 -0.35 7.11 56.52 0.40 0.05 16 31 H 0.42 -1.90 8.74 -34.47 -0.30 -2.20 16 32 H 0.08 -0.23 8.14 -51.94 -0.42 -0.65 16 33 H 0.10 -0.38 7.72 -51.93 -0.40 -0.78 16 34 H 0.13 -0.44 8.05 -52.48 -0.42 -0.87 16 35 H 0.14 -0.19 8.06 -52.48 -0.42 -0.61 16 36 H 0.14 -0.25 8.06 -52.49 -0.42 -0.67 16 37 H 0.13 -0.58 6.65 -52.48 -0.35 -0.93 16 38 H 0.10 -0.60 6.31 -51.93 -0.33 -0.93 16 39 H 0.08 -0.45 8.14 -51.93 -0.42 -0.87 16 40 H 0.14 -0.57 4.49 -52.49 -0.24 -0.80 16 41 H 0.14 -0.57 8.06 -52.49 -0.42 -0.99 16 42 H 0.14 -0.41 8.06 -52.49 -0.42 -0.83 16 43 H 0.14 0.11 4.95 -52.48 -0.26 -0.15 16 LS Contribution 359.97 15.07 5.42 5.42 Total: 0.00 -8.87 359.97 -12.77 -21.64 By element: Atomic # 1 Polarization: -6.59 SS G_CDS: -4.86 Total: -11.45 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -5.44 Total: -5.02 kcal Atomic # 7 Polarization: 2.90 SS G_CDS: -0.02 Total: 2.88 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: -2.24 Total: -10.84 kcal Atomic # 9 Polarization: -0.37 SS G_CDS: 0.04 Total: -0.33 kcal Atomic # 14 Polarization: 0.55 SS G_CDS: -5.17 Total: -4.62 kcal Atomic # 16 Polarization: 2.81 SS G_CDS: -0.49 Total: 2.33 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -8.87 -12.77 -21.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10466354_2726874.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.357 kcal (2) G-P(sol) polarization free energy of solvation -8.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds