Wall clock time and date at job start Mon Mar 8 2021 09:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86302 * 109.47404 * 2 1 4 4 C 1.50706 * 109.46721 * 119.99772 * 2 1 3 5 5 C 1.38211 * 120.00160 * 75.73712 * 4 2 1 6 6 S 1.76201 * 119.99740 * 359.97438 * 5 4 2 7 7 O 1.42105 * 106.40430 * 52.94437 * 6 5 4 8 8 O 1.42103 * 106.40200 * 280.02357 * 6 5 4 9 9 N 1.65602 * 107.21493 * 166.48473 * 6 5 4 10 10 C 1.46505 * 119.99888 * 67.27713 * 9 6 5 11 11 H 1.08992 * 112.84636 * 350.60707 * 10 9 6 12 12 C 1.53780 * 113.61252 * 121.80718 * 10 9 6 13 13 C 1.53780 * 87.07927 * 89.11350 * 12 10 9 14 14 H 1.08997 * 113.61506 * 270.79366 * 13 12 10 15 15 C 1.50700 * 113.61197 * 139.97990 * 13 12 10 16 16 C 1.38247 * 119.97678 * 119.99814 * 15 13 12 17 17 C 1.38193 * 120.02723 * 179.97438 * 16 15 13 18 18 C 1.38461 * 119.97731 * 359.97438 * 17 16 15 19 19 F 1.35100 * 120.02622 * 179.97438 * 18 17 16 20 20 C 1.38460 * 119.94590 * 0.25679 * 18 17 16 21 21 C 1.38202 * 119.97016 * 359.51222 * 20 18 17 22 22 C 1.53774 * 87.08335 * 25.42969 * 13 12 10 23 23 C 1.38257 * 119.99851 * 180.25424 * 5 4 2 24 24 C 1.38208 * 120.00045 * 359.51012 * 23 5 4 25 25 C 1.38255 * 120.00169 * 0.44174 * 24 23 5 26 26 C 1.38213 * 119.99614 * 359.81519 * 25 24 23 27 27 H 0.96698 * 114.00151 * 185.20849 * 1 2 3 28 28 H 1.08992 * 109.47274 * 239.99837 * 2 1 3 29 29 H 1.48502 * 110.00061 * 58.67415 * 3 2 1 30 30 H 1.48495 * 110.00332 * 179.97438 * 3 2 1 31 31 H 0.97000 * 119.99779 * 247.26820 * 9 6 5 32 32 H 1.08989 * 113.61628 * 334.56177 * 12 10 9 33 33 H 1.09005 * 113.68756 * 203.67119 * 12 10 9 34 34 H 1.08006 * 119.98368 * 359.97438 * 16 15 13 35 35 H 1.08003 * 120.01224 * 180.02562 * 17 16 15 36 36 H 1.07994 * 120.01383 * 179.74803 * 20 18 17 37 37 H 1.08004 * 119.98263 * 180.25636 * 21 20 18 38 38 H 1.09000 * 113.61345 * 89.11955 * 22 13 12 39 39 H 1.09002 * 113.61495 * 220.01529 * 22 13 12 40 40 H 1.08002 * 119.99678 * 179.72218 * 23 5 4 41 41 H 1.07998 * 120.00053 * 180.27565 * 24 23 5 42 42 H 1.08000 * 119.99890 * 179.83442 * 25 24 23 43 43 H 1.08006 * 119.99669 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9312 -0.7104 1.2306 5 6 1.8835 -2.0899 1.3000 6 16 1.2348 -3.0180 -0.0500 7 8 1.9391 -2.5889 -1.2072 8 8 -0.1803 -2.9584 0.0653 9 7 1.6577 -4.6003 0.1949 10 6 1.0801 -5.3480 1.3145 11 1 0.5194 -4.7147 2.0019 12 6 0.3200 -6.6134 0.8834 13 6 1.6575 -7.3626 1.0035 14 1 2.2444 -7.3584 0.0850 15 6 1.5275 -8.7367 1.6084 16 6 1.9181 -9.8491 0.8864 17 6 1.7997 -11.1096 1.4403 18 6 1.2903 -11.2583 2.7192 19 9 1.1737 -12.4902 3.2615 20 6 0.8949 -10.1439 3.4396 21 6 1.0186 -8.8840 2.8853 22 6 2.0817 -6.2828 2.0129 23 6 2.3395 -2.7413 2.4311 24 6 2.8523 -2.0135 3.4882 25 6 2.9009 -0.6336 3.4184 26 6 2.4403 0.0178 2.2898 27 1 -0.3933 -0.8797 0.0802 28 1 1.7923 -0.5138 -0.8899 29 1 1.5354 2.4772 1.1920 30 1 3.5350 1.7702 0.0006 31 1 2.2877 -5.0321 -0.4031 32 1 -0.0641 -6.5661 -0.1355 33 1 -0.4300 -6.9405 1.6036 34 1 2.3158 -9.7329 -0.1110 35 1 2.1054 -11.9784 0.8762 36 1 0.4936 -10.2589 4.4355 37 1 0.7142 -8.0142 3.4487 38 1 1.8140 -6.5186 3.0428 39 1 3.1200 -5.9688 1.9057 40 1 2.2980 -3.8191 2.4871 41 1 3.2125 -2.5226 4.3699 42 1 3.2992 -0.0648 4.2456 43 1 2.4779 1.0959 2.2354 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10466354_2726874.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:12:59 Heat of formation + Delta-G solvation = -57.706920 kcal Electronic energy + Delta-G solvation = -30355.086139 eV Core-core repulsion = 25988.502866 eV Total energy + Delta-G solvation = -4366.583274 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.098 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -49.90940 -41.25979 -40.87179 -39.14867 -38.51810 -38.07944 -37.08753 -34.44296 -32.96002 -32.58216 -32.10238 -31.10099 -27.13932 -26.68368 -25.96711 -24.59582 -24.06756 -23.19051 -22.69749 -21.07771 -20.30066 -19.61236 -18.86306 -18.60739 -18.31506 -17.39366 -17.32719 -17.17614 -16.96776 -16.61470 -16.57452 -16.30573 -16.09618 -15.65119 -15.45324 -15.28335 -15.07575 -14.51456 -14.45682 -14.23039 -14.07023 -14.00129 -13.86562 -13.71748 -13.58900 -13.49445 -13.41301 -13.13608 -13.09142 -12.99939 -12.30341 -12.16031 -12.11939 -11.77653 -11.70588 -11.66886 -11.26453 -11.17206 -10.67651 -10.57233 -10.22699 -10.05329 -9.46113 -4.92844 -0.93851 -0.47520 -0.05707 0.14098 0.28750 1.16623 1.51644 1.62292 1.75495 2.21477 2.28263 2.57765 3.11385 3.18375 3.31975 3.37658 3.49089 3.53313 3.62253 3.68279 3.76383 3.83062 3.93476 3.97064 3.98102 3.99846 4.11750 4.19042 4.22894 4.34091 4.40876 4.42284 4.57785 4.66968 4.76505 4.83491 4.92020 4.97984 4.99387 5.06634 5.07860 5.10469 5.12897 5.20078 5.29116 5.42467 5.59017 5.63234 5.90083 5.94794 6.13986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.174 4.174 3 Si 0.827 3.173 4 C -0.038 4.038 5 C -0.678 4.678 6 S 2.701 3.299 7 O -0.979 6.979 8 O -0.972 6.972 9 N -1.081 6.081 10 C 0.106 3.894 11 H 0.117 0.883 12 C -0.143 4.143 13 C -0.071 4.071 14 H 0.112 0.888 15 C -0.080 4.080 16 C -0.093 4.093 17 C -0.162 4.162 18 C 0.062 3.938 19 F -0.157 7.157 20 C -0.159 4.159 21 C -0.088 4.088 22 C -0.138 4.138 23 C -0.034 4.034 24 C -0.128 4.128 25 C -0.061 4.061 26 C -0.157 4.157 27 H 0.367 0.633 28 H 0.099 0.901 29 H -0.267 1.267 30 H -0.253 1.253 31 H 0.433 0.567 32 H 0.074 0.926 33 H 0.106 0.894 34 H 0.149 0.851 35 H 0.139 0.861 36 H 0.144 0.856 37 H 0.160 0.840 38 H 0.120 0.880 39 H 0.096 0.904 40 H 0.172 0.828 41 H 0.174 0.826 42 H 0.164 0.836 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.809 -0.442 3.364 5.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.279 4.279 3 Si 0.723 3.277 4 C -0.040 4.040 5 C -0.765 4.765 6 S 2.791 3.209 7 O -0.969 6.969 8 O -0.962 6.962 9 N -0.844 5.844 10 C -0.002 4.002 11 H 0.135 0.865 12 C -0.182 4.182 13 C -0.089 4.089 14 H 0.130 0.870 15 C -0.080 4.080 16 C -0.110 4.110 17 C -0.181 4.181 18 C 0.043 3.957 19 F -0.136 7.136 20 C -0.177 4.177 21 C -0.106 4.106 22 C -0.177 4.177 23 C -0.052 4.052 24 C -0.147 4.147 25 C -0.078 4.078 26 C -0.175 4.175 27 H 0.218 0.782 28 H 0.117 0.883 29 H -0.193 1.193 30 H -0.178 1.178 31 H 0.272 0.728 32 H 0.093 0.907 33 H 0.125 0.875 34 H 0.167 0.833 35 H 0.157 0.843 36 H 0.162 0.838 37 H 0.178 0.822 38 H 0.138 0.862 39 H 0.114 0.886 40 H 0.189 0.811 41 H 0.191 0.809 42 H 0.181 0.819 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.740 1.124 3.155 5.021 hybrid contribution 0.361 -2.233 0.959 2.457 sum 4.101 -1.110 4.114 5.914 Atomic orbital electron populations 1.86746 1.16650 1.35051 1.96694 1.26602 0.85136 1.19577 0.96543 0.91745 0.76831 0.73110 0.86021 1.19992 0.95266 0.92617 0.96128 1.30746 1.19931 1.05888 1.19974 1.01607 0.73584 0.72664 0.73021 1.93580 1.74837 1.81057 1.47418 1.93572 1.29802 1.86037 1.86792 1.54933 1.60719 1.27546 1.41240 1.22045 0.96574 0.93926 0.87608 0.86534 1.23571 0.96743 0.94189 1.03676 1.21606 0.98293 0.89194 0.99805 0.87021 1.19973 0.98340 0.95377 0.94298 1.21216 0.98347 0.90705 1.00771 1.21369 1.02379 1.00133 0.94239 1.18158 1.03508 0.79947 0.94086 1.91470 1.94234 1.41693 1.86229 1.21398 1.02692 0.91979 1.01648 1.21179 0.97494 0.96844 0.95036 1.23687 1.00511 0.93560 0.99966 1.21526 0.91531 1.01750 0.90381 1.21850 0.98777 0.94011 1.00039 1.21907 0.93199 0.95904 0.96824 1.21397 1.01107 1.00331 0.94668 0.78209 0.88332 1.19270 1.17807 0.72820 0.90727 0.87516 0.83318 0.84344 0.83837 0.82244 0.86179 0.88554 0.81090 0.80860 0.81893 0.84891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -5.79 12.68 -148.98 -1.89 -7.68 16 2 C -0.17 -1.38 2.10 71.24 0.15 -1.23 16 3 Si 0.83 2.19 30.43 68.60 2.09 4.28 16 4 C -0.04 -0.25 5.22 -19.86 -0.10 -0.35 16 5 C -0.68 -1.84 5.78 22.27 0.13 -1.71 16 6 S 2.70 7.60 4.54 -56.49 -0.26 7.34 16 7 O -0.98 -8.48 15.80 -128.00 -2.02 -10.50 16 8 O -0.97 -7.41 15.45 -127.28 -1.97 -9.38 16 9 N -1.08 6.61 5.36 -167.20 -0.90 5.71 16 10 C 0.11 -0.96 2.69 45.52 0.12 -0.84 16 11 H 0.12 -1.20 7.37 -2.39 -0.02 -1.21 16 12 C -0.14 1.16 7.34 31.12 0.23 1.39 16 13 C -0.07 0.69 3.79 -11.02 -0.04 0.65 16 14 H 0.11 -1.27 8.02 -2.39 -0.02 -1.29 16 15 C -0.08 0.47 5.29 -19.86 -0.11 0.36 16 16 C -0.09 0.34 9.71 22.26 0.22 0.56 16 17 C -0.16 -0.02 10.03 22.31 0.22 0.20 16 18 C 0.06 0.18 7.30 22.38 0.16 0.34 16 19 F -0.16 -1.11 17.27 44.97 0.78 -0.33 16 20 C -0.16 0.21 10.03 22.31 0.22 0.43 16 21 C -0.09 0.51 8.61 22.26 0.19 0.70 16 22 C -0.14 1.78 6.40 31.12 0.20 1.97 16 23 C -0.03 0.13 9.16 22.27 0.20 0.33 16 24 C -0.13 0.67 10.05 22.27 0.22 0.90 16 25 C -0.06 0.13 10.05 22.27 0.22 0.36 16 26 C -0.16 -0.57 8.66 22.27 0.19 -0.38 16 27 H 0.37 3.63 5.98 -74.06 -0.44 3.19 16 28 H 0.10 0.81 5.57 -2.39 -0.01 0.79 16 29 H -0.27 -1.45 6.79 99.48 0.68 -0.77 16 30 H -0.25 -0.96 7.11 99.48 0.71 -0.25 16 31 H 0.43 -4.27 8.74 -96.75 -0.85 -5.12 16 32 H 0.07 -0.43 8.14 -2.39 -0.02 -0.45 16 33 H 0.11 -0.99 7.72 -2.38 -0.02 -1.00 16 34 H 0.15 -1.14 8.05 -2.91 -0.02 -1.17 16 35 H 0.14 -0.23 8.06 -2.91 -0.02 -0.25 16 36 H 0.14 -0.54 8.06 -2.91 -0.02 -0.57 16 37 H 0.16 -1.86 6.65 -2.91 -0.02 -1.88 16 38 H 0.12 -1.89 6.31 -2.39 -0.02 -1.90 16 39 H 0.10 -1.39 8.14 -2.39 -0.02 -1.41 16 40 H 0.17 -1.88 4.49 -2.91 -0.01 -1.89 16 41 H 0.17 -2.16 8.06 -2.91 -0.02 -2.19 16 42 H 0.16 -1.32 8.06 -2.91 -0.02 -1.34 16 43 H 0.13 0.35 4.95 -2.91 -0.01 0.34 16 Total: 0.00 -23.32 359.97 -1.92 -25.24 By element: Atomic # 1 Polarization: -18.18 SS G_CDS: -0.19 Total: -18.38 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: 2.44 Total: 3.70 kcal Atomic # 7 Polarization: 6.61 SS G_CDS: -0.90 Total: 5.71 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -5.88 Total: -27.55 kcal Atomic # 9 Polarization: -1.11 SS G_CDS: 0.78 Total: -0.33 kcal Atomic # 14 Polarization: 2.19 SS G_CDS: 2.09 Total: 4.28 kcal Atomic # 16 Polarization: 7.60 SS G_CDS: -0.26 Total: 7.34 kcal Total: -23.32 -1.92 -25.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10466354_2726874.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.471 kcal (2) G-P(sol) polarization free energy of solvation -23.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds