Wall clock time and date at job start Mon Mar 8 2021 08:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34227 * 117.00168 * 2 1 4 4 O 1.20828 * 119.99537 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00427 * 179.97438 * 3 2 1 6 6 H 1.09006 * 112.84665 * 48.80493 * 5 3 2 7 7 C 1.53776 * 113.61713 * 180.02562 * 5 3 2 8 8 C 1.53785 * 87.08349 * 139.98384 * 7 5 3 9 9 H 1.09000 * 113.61221 * 89.20124 * 8 7 5 10 10 S 1.81398 * 113.61369 * 220.02390 * 8 7 5 11 11 O 1.42095 * 110.54763 * 68.36942 * 10 8 7 12 12 O 1.42104 * 110.53900 * 291.61845 * 10 8 7 13 13 O 1.52203 * 104.44909 * 179.97438 * 10 8 7 14 14 C 1.35926 * 114.00053 * 74.99420 * 13 10 8 15 15 C 1.38817 * 120.05709 * 90.00542 * 14 13 10 16 16 Cl 1.73593 * 120.03767 * 359.95166 * 15 14 13 17 17 C 1.38257 * 119.91878 * 179.97438 * 15 14 13 18 18 C 1.50706 * 119.97314 * 179.97438 * 17 15 14 19 19 O 1.42901 * 109.47017 * 75.00073 * 18 17 15 20 20 Si 1.86301 * 109.46932 * 194.99696 * 18 17 15 21 21 C 1.38240 * 120.04574 * 0.27049 * 17 15 14 22 22 C 1.38284 * 120.11773 * 359.45041 * 21 17 15 23 23 C 1.38148 * 120.07376 * 0.55266 * 22 21 17 24 24 C 1.53781 * 87.07901 * 334.56783 * 8 7 5 25 25 H 1.08996 * 109.47419 * 60.00112 * 1 2 3 26 26 H 1.08999 * 109.47032 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47146 * 299.99653 * 1 2 3 28 28 H 1.09000 * 113.61534 * 25.43212 * 7 5 3 29 29 H 1.09004 * 113.61852 * 254.53279 * 7 5 3 30 30 H 1.08996 * 109.47392 * 314.99549 * 18 17 15 31 31 H 0.96699 * 113.99482 * 179.97438 * 19 18 17 32 32 H 1.48504 * 110.00052 * 300.00222 * 20 18 17 33 33 H 1.48503 * 110.00024 * 61.31904 * 20 18 17 34 34 H 1.08001 * 119.93891 * 179.72761 * 21 17 15 35 35 H 1.08002 * 119.95745 * 180.29871 * 22 21 17 36 36 H 1.08007 * 120.01611 * 179.70106 * 23 22 21 37 37 H 1.08997 * 113.61555 * 139.97649 * 24 8 7 38 38 H 1.09005 * 113.61507 * 270.88771 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0239 0.6362 -0.7550 7 6 4.1077 2.7142 0.0011 8 6 5.1807 2.2266 0.9890 9 1 6.0812 1.8494 0.5043 10 16 5.5381 3.4102 2.3163 11 8 4.4261 3.5270 3.1932 12 8 6.1843 4.5636 1.7952 13 8 6.6078 2.7273 3.1564 14 6 7.8420 2.7277 2.5868 15 6 8.7204 3.7744 2.8316 16 17 8.2436 5.0853 3.8649 17 6 9.9752 3.7716 2.2512 18 6 10.9296 4.9076 2.5157 19 8 11.4682 4.7802 3.8332 20 14 12.3150 4.8573 1.2711 21 6 10.3527 2.7307 1.4235 22 6 9.4812 1.6844 1.1830 23 6 8.2262 1.6821 1.7604 24 6 4.1906 1.1232 1.3978 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.4171 3.4403 0.4299 29 1 4.5111 3.0294 -0.9612 30 1 10.3987 5.8557 2.4302 31 1 12.0923 5.4791 4.0722 32 1 13.0468 3.5695 1.3774 33 1 11.7711 5.0206 -0.1011 34 1 11.3317 2.7326 0.9675 35 1 9.7806 0.8701 0.5398 36 1 7.5444 0.8668 1.5680 37 1 4.6609 0.1538 1.5629 38 1 3.5226 1.4143 2.2084 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10544596_13206342.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:35:31 Heat of formation + Delta-G solvation = -152.713126 kcal Electronic energy + Delta-G solvation = -28961.894166 eV Core-core repulsion = 24505.978292 eV Total energy + Delta-G solvation = -4455.915875 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 363.040 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.48090 -41.98412 -39.97577 -39.64432 -38.57138 -37.80641 -37.53129 -37.49421 -37.43177 -32.99434 -31.70608 -29.96001 -27.87034 -27.18659 -27.08040 -25.05092 -23.78978 -22.97098 -21.66311 -20.83319 -19.94171 -19.23222 -18.90688 -18.52688 -18.46010 -18.22271 -17.89873 -17.55959 -17.00561 -16.69744 -16.36034 -15.88825 -15.44032 -15.37001 -14.93049 -14.82537 -14.58038 -14.48002 -14.21624 -14.04922 -13.95565 -13.86259 -13.65055 -13.58946 -13.44249 -13.40168 -13.06429 -12.97841 -12.81322 -12.75792 -12.56892 -12.06472 -11.94602 -11.90017 -11.88465 -11.69864 -11.40628 -10.40026 -10.30948 -10.08204 -4.91093 -1.35418 -0.36702 -0.29991 0.62675 0.86186 0.98151 1.24997 1.63088 1.68560 1.90676 2.00353 2.32759 2.46076 2.74994 2.91970 3.08834 3.14252 3.44009 3.50798 3.54128 3.63607 3.81981 3.88911 3.94027 4.06326 4.17778 4.23639 4.25427 4.29122 4.33738 4.37008 4.52413 4.58239 4.65311 4.66317 4.67904 4.84650 4.88874 4.93442 5.26624 5.34856 6.55910 6.83068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.356 6.356 3 C 0.461 3.539 4 O -0.541 6.541 5 C -0.086 4.086 6 H 0.183 0.817 7 C -0.102 4.102 8 C -0.619 4.619 9 H 0.209 0.791 10 S 2.575 3.425 11 O -0.963 6.963 12 O -0.966 6.966 13 O -0.660 6.660 14 C 0.049 3.951 15 C -0.024 4.024 16 Cl -0.052 7.052 17 C -0.072 4.072 18 C -0.105 4.105 19 O -0.557 6.557 20 Si 0.789 3.211 21 C -0.104 4.104 22 C -0.075 4.075 23 C -0.106 4.106 24 C -0.098 4.098 25 H 0.062 0.938 26 H 0.132 0.868 27 H 0.057 0.943 28 H 0.082 0.918 29 H 0.133 0.867 30 H 0.077 0.923 31 H 0.404 0.596 32 H -0.265 1.265 33 H -0.278 1.278 34 H 0.155 0.845 35 H 0.199 0.801 36 H 0.201 0.799 37 H 0.150 0.850 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.235 -6.840 -6.923 12.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.272 6.272 3 C 0.306 3.694 4 O -0.431 6.431 5 C -0.106 4.106 6 H 0.200 0.800 7 C -0.141 4.141 8 C -0.729 4.729 9 H 0.226 0.774 10 S 2.675 3.325 11 O -0.962 6.962 12 O -0.964 6.964 13 O -0.619 6.619 14 C 0.007 3.993 15 C -0.053 4.053 16 Cl -0.023 7.023 17 C -0.073 4.073 18 C -0.213 4.213 19 O -0.367 6.367 20 Si 0.690 3.310 21 C -0.123 4.123 22 C -0.092 4.092 23 C -0.126 4.126 24 C -0.136 4.136 25 H 0.081 0.919 26 H 0.150 0.850 27 H 0.076 0.924 28 H 0.100 0.900 29 H 0.151 0.849 30 H 0.095 0.905 31 H 0.255 0.745 32 H -0.192 1.192 33 H -0.204 1.204 34 H 0.172 0.828 35 H 0.216 0.784 36 H 0.218 0.782 37 H 0.168 0.832 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.799 -6.811 -6.832 11.802 hybrid contribution -1.622 0.434 0.612 1.787 sum 5.177 -6.377 -6.220 10.303 Atomic orbital electron populations 1.23559 0.75046 1.05799 1.02406 1.86501 1.24698 1.32612 1.83346 1.24199 0.92897 0.81207 0.71139 1.90704 1.68041 1.37733 1.46603 1.22646 0.85647 0.99998 1.02266 0.79973 1.22791 0.93875 0.96384 1.01025 1.32117 1.09935 1.14679 1.16217 0.77432 1.06000 0.73753 0.76364 0.76339 1.93606 1.52807 1.86125 1.63622 1.93644 1.72341 1.48930 1.81506 1.85735 1.27986 1.84982 1.63185 1.18255 0.82100 0.97977 1.00993 1.21311 0.95698 0.91084 0.97227 1.98396 1.91599 1.47010 1.65300 1.19649 0.92227 0.97884 0.97520 1.25228 1.03869 0.96992 0.95175 1.86450 1.65149 1.55137 1.29980 0.93502 0.79618 0.84391 0.73481 1.21605 1.01316 0.92900 0.96435 1.21686 0.90904 0.98602 0.98028 1.21975 0.99766 0.96481 0.94353 1.22850 0.95082 1.00021 0.95642 0.91898 0.84972 0.92406 0.89983 0.84909 0.90520 0.74501 1.19154 1.20422 0.82765 0.78418 0.78190 0.83242 0.89371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.56 113.37 1.20 1.16 16 2 O -0.36 -0.40 10.57 -51.39 -0.54 -0.95 16 3 C 0.46 1.41 7.48 71.23 0.53 1.94 16 4 O -0.54 -6.04 15.65 21.96 0.34 -5.70 16 5 C -0.09 0.49 4.26 -11.02 -0.05 0.44 16 6 H 0.18 -2.60 8.14 -2.38 -0.02 -2.62 16 7 C -0.10 0.30 6.99 31.12 0.22 0.52 16 8 C -0.62 3.22 4.03 31.12 0.13 3.35 16 9 H 0.21 -3.09 6.10 -2.39 -0.01 -3.11 16 10 S 2.57 19.59 5.12 -56.49 -0.29 19.30 16 11 O -0.96 -15.47 17.27 -118.57 -2.05 -17.52 16 12 O -0.97 -11.87 15.18 -118.57 -1.80 -13.67 16 13 O -0.66 -4.61 9.51 -61.82 -0.59 -5.20 16 14 C 0.05 0.21 4.79 22.52 0.11 0.32 16 15 C -0.02 -0.20 5.65 22.41 0.13 -0.08 16 16 Cl -0.05 -0.67 25.90 -2.72 -0.07 -0.74 16 17 C -0.07 -0.29 5.30 -19.86 -0.11 -0.39 16 18 C -0.11 -0.05 2.08 71.24 0.15 0.10 16 19 O -0.56 -0.40 12.80 -148.98 -1.91 -2.30 16 20 Si 0.79 -4.34 30.18 68.60 2.07 -2.27 16 21 C -0.10 0.24 8.66 22.28 0.19 0.43 16 22 C -0.07 0.62 10.04 22.26 0.22 0.84 16 23 C -0.11 0.67 8.50 22.36 0.19 0.86 16 24 C -0.10 0.59 7.19 31.12 0.22 0.82 16 25 H 0.06 -0.05 8.13 -2.39 -0.02 -0.07 16 26 H 0.13 -0.98 8.14 -2.39 -0.02 -1.00 16 27 H 0.06 0.02 8.13 -2.39 -0.02 0.00 16 28 H 0.08 0.26 7.39 -2.39 -0.02 0.24 16 29 H 0.13 -1.10 8.14 -2.38 -0.02 -1.12 16 30 H 0.08 0.06 7.41 -2.39 -0.02 0.04 16 31 H 0.40 -3.83 8.74 -74.06 -0.65 -4.48 16 32 H -0.27 0.64 6.75 99.48 0.67 1.31 16 33 H -0.28 0.25 7.11 99.48 0.71 0.96 16 34 H 0.16 -0.83 4.89 -2.91 -0.01 -0.85 16 35 H 0.20 -3.45 8.06 -2.91 -0.02 -3.47 16 36 H 0.20 -3.30 7.25 -2.91 -0.02 -3.32 16 37 H 0.15 -2.14 8.14 -2.39 -0.02 -2.16 16 38 H 0.09 -0.04 7.38 -2.38 -0.02 -0.06 16 Total: 0.00 -37.24 347.62 -1.21 -38.45 By element: Atomic # 1 Polarization: -20.20 SS G_CDS: 0.49 Total: -19.71 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: 3.13 Total: 10.31 kcal Atomic # 8 Polarization: -38.79 SS G_CDS: -6.54 Total: -45.33 kcal Atomic # 14 Polarization: -4.34 SS G_CDS: 2.07 Total: -2.27 kcal Atomic # 16 Polarization: 19.59 SS G_CDS: -0.29 Total: 19.30 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -0.07 Total: -0.74 kcal Total: -37.24 -1.21 -38.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10544596_13206342.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.262 kcal (2) G-P(sol) polarization free energy of solvation -37.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds