Wall clock time and date at job start Mon Mar 8 2021 09:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86306 * 1 3 3 C 1.86297 * 109.46940 * 2 1 4 4 C 1.86301 * 109.46645 * 240.00631 * 2 1 3 5 5 C 1.86300 * 109.47543 * 120.00480 * 2 1 3 6 6 C 1.53002 * 109.47139 * 59.99648 * 5 2 1 7 7 C 1.52999 * 109.47213 * 179.97438 * 6 5 2 8 8 S 1.81395 * 109.46986 * 180.02562 * 7 6 5 9 9 O 1.42105 * 110.54530 * 291.62628 * 8 7 6 10 10 O 1.42101 * 110.54333 * 68.37799 * 8 7 6 11 11 O 1.52198 * 104.44745 * 180.02562 * 8 7 6 12 12 C 1.35923 * 114.00284 * 75.00333 * 11 8 7 13 13 C 1.38664 * 120.06265 * 89.99542 * 12 11 8 14 14 C 1.38203 * 119.95857 * 180.02562 * 13 12 11 15 15 C 1.38236 * 120.07474 * 359.97438 * 14 13 12 16 16 C 1.38295 * 120.11958 * 0.02628 * 15 14 13 17 17 C 1.50697 * 119.97523 * 179.97438 * 16 15 14 18 18 O 1.42898 * 109.46975 * 254.99811 * 17 16 15 19 19 Si 1.86298 * 109.47420 * 15.00220 * 17 16 15 20 20 H 1.48496 * 109.47363 * 59.99389 * 19 17 16 21 21 H 1.48496 * 109.47326 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46945 * 299.99865 * 19 17 16 23 23 C 1.38212 * 120.04169 * 359.71804 * 16 15 14 24 24 Cl 1.73598 * 120.03689 * 180.29538 * 23 16 15 25 25 H 1.08999 * 109.46429 * 299.99414 * 1 2 3 26 26 H 1.08991 * 109.47302 * 59.99482 * 1 2 3 27 27 H 1.09003 * 109.46738 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46979 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47763 * 300.00369 * 3 2 1 30 30 H 1.08999 * 109.47081 * 60.00986 * 3 2 1 31 31 H 1.08996 * 109.47185 * 299.99508 * 4 2 1 32 32 H 1.08995 * 109.47791 * 59.99672 * 4 2 1 33 33 H 1.09005 * 109.46862 * 179.97438 * 4 2 1 34 34 H 1.09003 * 109.46664 * 299.99801 * 5 2 1 35 35 H 1.08995 * 109.47361 * 179.97438 * 5 2 1 36 36 H 1.09004 * 109.46811 * 60.00144 * 6 5 2 37 37 H 1.09005 * 109.47229 * 300.00279 * 6 5 2 38 38 H 1.09003 * 109.46593 * 60.00151 * 7 6 5 39 39 H 1.08994 * 109.46870 * 300.00519 * 7 6 5 40 40 H 1.07995 * 120.02158 * 0.02706 * 13 12 11 41 41 H 1.07995 * 119.96131 * 180.02562 * 14 13 12 42 42 H 1.07997 * 119.93459 * 180.02562 * 15 14 13 43 43 H 1.09008 * 109.46800 * 134.99859 * 17 16 15 44 44 H 0.96693 * 114.00131 * 60.00404 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4839 -0.8781 -1.5213 5 6 2.4842 -0.8783 1.5210 6 6 1.9742 -2.3208 1.5210 7 6 2.4848 -3.0424 2.7698 8 16 1.8807 -4.7528 2.7693 9 8 0.4733 -4.7847 2.9635 10 8 2.4933 -5.4977 1.7257 11 8 2.4490 -5.3566 4.0456 12 6 1.8173 -4.9501 5.1785 13 6 0.7306 -5.6631 5.6618 14 6 0.0897 -5.2476 6.8135 15 6 0.5309 -4.1224 7.4845 16 6 1.6143 -3.4089 7.0052 17 6 2.0923 -2.1824 7.7388 18 8 1.6939 -1.0127 7.0212 19 14 1.3451 -2.1488 9.4451 20 1 1.7590 -3.3644 10.1908 21 1 1.8166 -0.9406 10.1683 22 1 -0.1356 -2.1150 9.3365 23 6 2.2623 -3.8231 5.8568 24 17 3.6270 -2.9318 5.2595 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.5740 1.7565 -0.0005 29 1 2.1206 2.2704 -0.8899 30 1 2.1208 2.2702 0.8901 31 1 2.1206 -1.9057 -1.5213 32 1 2.1206 -0.3643 -2.4112 33 1 3.5740 -0.8777 -1.5215 34 1 2.1209 -0.3645 2.4110 35 1 3.5741 -0.8787 1.5208 36 1 2.3375 -2.8346 0.6309 37 1 0.8841 -2.3208 1.5210 38 1 2.1218 -2.5287 3.6600 39 1 3.5747 -3.0423 2.7692 40 1 0.3855 -6.5425 5.1386 41 1 -0.7564 -5.8031 7.1903 42 1 0.0286 -3.8000 8.3845 43 1 3.1791 -2.2073 7.8186 44 1 0.7371 -0.9251 6.9120 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_10544596_14927650.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:37:12 Heat of formation + Delta-G solvation = -157.400578 kcal Electronic energy + Delta-G solvation = -27802.326979 eV Core-core repulsion = 23804.280165 eV Total energy + Delta-G solvation = -3998.046813 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 366.073 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.44164 -40.08553 -38.27157 -37.96357 -37.66939 -37.16267 -35.91893 -32.92888 -31.77747 -29.73590 -28.53376 -28.42544 -28.36612 -27.25120 -25.04968 -23.52611 -23.03505 -21.39010 -19.61247 -19.03179 -18.85886 -18.33411 -17.80955 -17.15665 -16.88947 -16.39399 -16.11370 -15.78278 -15.66041 -15.11105 -14.94375 -14.73760 -14.54849 -14.27972 -14.16562 -14.08747 -13.83578 -13.67848 -13.62392 -13.46907 -13.29973 -13.29410 -13.24708 -13.18686 -13.14405 -13.10389 -13.09657 -12.67366 -12.53812 -12.34426 -12.07545 -11.92274 -11.85026 -11.61671 -10.83977 -10.80840 -10.71837 -10.56566 -10.33095 -10.16672 -1.15761 -0.41022 -0.30593 0.59424 0.83038 0.97915 1.20938 1.33246 1.72301 1.73522 1.84289 1.85609 1.96685 2.50284 2.61756 2.84977 2.97955 3.27859 3.37208 3.48099 3.54577 3.61047 3.71599 3.81740 4.04877 4.05903 4.24367 4.35378 4.47019 4.54909 4.57265 4.67925 4.70892 4.72258 4.75114 4.75958 4.76800 4.77438 4.79461 4.86742 4.94094 5.24524 5.30077 5.46613 5.54079 5.55833 6.31573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.452 4.452 2 Si 1.002 2.998 3 C -0.449 4.449 4 C -0.453 4.453 5 C -0.404 4.404 6 C -0.100 4.100 7 C -0.647 4.647 8 S 2.579 3.421 9 O -0.948 6.948 10 O -0.920 6.920 11 O -0.658 6.658 12 C 0.079 3.921 13 C -0.072 4.072 14 C -0.086 4.086 15 C -0.100 4.100 16 C -0.096 4.096 17 C -0.088 4.088 18 O -0.526 6.526 19 Si 0.952 3.048 20 H -0.244 1.244 21 H -0.246 1.246 22 H -0.246 1.246 23 C -0.033 4.033 24 Cl -0.027 7.027 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.142 0.858 39 H 0.139 0.861 40 H 0.155 0.845 41 H 0.153 0.847 42 H 0.146 0.854 43 H 0.125 0.875 44 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.283 2.516 4.461 5.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.560 4.560 2 Si 1.198 2.802 3 C -0.556 4.556 4 C -0.561 4.561 5 C -0.490 4.490 6 C -0.138 4.138 7 C -0.775 4.775 8 S 2.675 3.325 9 O -0.946 6.946 10 O -0.919 6.919 11 O -0.616 6.616 12 C 0.036 3.964 13 C -0.092 4.092 14 C -0.104 4.104 15 C -0.119 4.119 16 C -0.097 4.097 17 C -0.198 4.198 18 O -0.331 6.331 19 Si 0.772 3.228 20 H -0.168 1.168 21 H -0.169 1.169 22 H -0.170 1.170 23 C -0.062 4.062 24 Cl 0.002 6.998 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.160 0.840 39 H 0.157 0.843 40 H 0.172 0.828 41 H 0.171 0.829 42 H 0.163 0.837 43 H 0.143 0.857 44 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -1.997 1.941 5.002 5.725 hybrid contribution 0.288 0.366 -0.593 0.754 sum -1.709 2.306 4.409 5.261 Atomic orbital electron populations 1.26162 1.20670 1.04573 1.04552 0.79338 0.67285 0.67041 0.66510 1.26101 1.06233 1.18827 1.04471 1.26178 1.06367 1.08172 1.15365 1.26153 1.06233 1.00338 1.16245 1.20986 1.01509 0.97097 0.94224 1.31349 1.13558 1.23464 1.09091 1.06052 0.74805 0.77697 0.73905 1.93653 1.31210 1.86379 1.83371 1.93663 1.77550 1.67992 1.52664 1.85766 1.70287 1.76097 1.29451 1.17766 0.95303 0.95575 0.87738 1.21438 0.92153 0.99510 0.96089 1.21228 0.99647 0.95983 0.93583 1.21411 0.95163 0.95053 1.00227 1.20203 0.96198 0.98804 0.94513 1.25153 1.06306 0.82954 1.05369 1.86596 1.28413 1.40223 1.77888 0.85656 0.80076 0.82399 0.74620 1.16751 1.16911 1.17001 1.21025 0.93605 0.94215 0.97326 1.98428 1.41517 1.73764 1.86078 0.91150 0.91154 0.91138 0.91275 0.91202 0.91229 0.91117 0.91152 0.91164 0.89872 0.90096 0.90070 0.89994 0.83978 0.84263 0.82772 0.82938 0.83696 0.85726 0.77524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.63 8.65 101.05 0.87 1.50 16 2 Si 1.00 -2.50 12.19 -169.99 -2.07 -4.58 16 3 C -0.45 0.62 8.65 101.05 0.87 1.50 16 4 C -0.45 0.50 8.65 101.05 0.87 1.37 16 5 C -0.40 0.71 4.45 37.16 0.17 0.88 16 6 C -0.10 0.07 4.59 -26.73 -0.12 -0.06 16 7 C -0.65 -0.02 4.01 37.16 0.15 0.13 16 8 S 2.58 7.20 5.17 -107.50 -0.56 6.65 16 9 O -0.95 -3.78 16.26 -67.04 -1.09 -4.87 16 10 O -0.92 -5.53 18.09 -67.03 -1.21 -6.74 16 11 O -0.66 -1.70 9.58 -51.82 -0.50 -2.20 16 12 C 0.08 0.11 4.79 -39.19 -0.19 -0.08 16 13 C -0.07 0.01 9.05 -39.44 -0.36 -0.34 16 14 C -0.09 0.22 10.04 -39.60 -0.40 -0.18 16 15 C -0.10 0.27 8.66 -39.56 -0.34 -0.07 16 16 C -0.10 0.13 5.26 -104.61 -0.55 -0.42 16 17 C -0.09 0.20 2.09 36.00 0.08 0.27 16 18 O -0.53 1.04 12.84 -35.23 -0.45 0.59 16 19 Si 0.95 -2.81 25.49 -169.99 -4.33 -7.14 16 20 H -0.24 0.57 7.11 56.52 0.40 0.97 16 21 H -0.25 0.30 7.11 56.52 0.40 0.70 16 22 H -0.25 0.89 6.73 56.52 0.38 1.27 16 23 C -0.03 -0.01 5.61 -39.36 -0.22 -0.23 16 24 Cl -0.03 -0.01 22.37 -51.86 -1.16 -1.17 16 25 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 26 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 27 H 0.07 -0.09 7.79 -51.93 -0.40 -0.50 16 28 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 29 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 30 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 31 H 0.07 -0.07 7.79 -51.93 -0.40 -0.47 16 32 H 0.07 -0.07 7.96 -51.93 -0.41 -0.49 16 33 H 0.07 -0.07 7.96 -51.93 -0.41 -0.49 16 34 H 0.08 -0.18 7.96 -51.93 -0.41 -0.59 16 35 H 0.08 -0.16 7.96 -51.93 -0.41 -0.58 16 36 H 0.08 -0.11 7.79 -51.93 -0.40 -0.52 16 37 H 0.08 -0.14 7.79 -51.93 -0.40 -0.54 16 38 H 0.14 -0.14 5.57 -51.92 -0.29 -0.43 16 39 H 0.14 -0.14 7.25 -51.93 -0.38 -0.52 16 40 H 0.15 -0.21 8.06 -52.49 -0.42 -0.63 16 41 H 0.15 -0.82 8.06 -52.49 -0.42 -1.24 16 42 H 0.15 -0.70 4.88 -52.49 -0.26 -0.95 16 43 H 0.12 -0.29 7.39 -51.92 -0.38 -0.68 16 44 H 0.38 -2.03 8.70 45.56 0.40 -1.64 16 LS Contribution 380.19 15.07 5.73 5.73 Total: 0.00 -8.58 380.19 -10.72 -19.30 By element: Atomic # 1 Polarization: -3.93 SS G_CDS: -5.91 Total: -9.84 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: 0.83 Total: 4.27 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: -3.25 Total: -13.22 kcal Atomic # 14 Polarization: -5.31 SS G_CDS: -6.41 Total: -11.72 kcal Atomic # 16 Polarization: 7.20 SS G_CDS: -0.56 Total: 6.65 kcal Atomic # 17 Polarization: -0.01 SS G_CDS: -1.16 Total: -1.17 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -8.58 -10.72 -19.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10544596_14927650.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.099 kcal (2) G-P(sol) polarization free energy of solvation -8.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds