Wall clock time and date at job start Mon Mar 8 2021 09:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86306 * 1 3 3 C 1.86297 * 109.46940 * 2 1 4 4 C 1.86301 * 109.46645 * 240.00631 * 2 1 3 5 5 C 1.86300 * 109.47543 * 120.00480 * 2 1 3 6 6 C 1.53002 * 109.47139 * 59.99648 * 5 2 1 7 7 C 1.52999 * 109.47213 * 179.97438 * 6 5 2 8 8 S 1.81395 * 109.46986 * 180.02562 * 7 6 5 9 9 O 1.42105 * 110.54530 * 291.62628 * 8 7 6 10 10 O 1.42101 * 110.54333 * 68.37799 * 8 7 6 11 11 O 1.52198 * 104.44745 * 180.02562 * 8 7 6 12 12 C 1.35923 * 114.00284 * 75.00333 * 11 8 7 13 13 C 1.38664 * 120.06265 * 89.99542 * 12 11 8 14 14 C 1.38203 * 119.95857 * 180.02562 * 13 12 11 15 15 C 1.38236 * 120.07474 * 359.97438 * 14 13 12 16 16 C 1.38295 * 120.11958 * 0.02628 * 15 14 13 17 17 C 1.50697 * 119.97523 * 179.97438 * 16 15 14 18 18 O 1.42898 * 109.46975 * 254.99811 * 17 16 15 19 19 Si 1.86298 * 109.47420 * 15.00220 * 17 16 15 20 20 H 1.48496 * 109.47363 * 59.99389 * 19 17 16 21 21 H 1.48496 * 109.47326 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46945 * 299.99865 * 19 17 16 23 23 C 1.38212 * 120.04169 * 359.71804 * 16 15 14 24 24 Cl 1.73598 * 120.03689 * 180.29538 * 23 16 15 25 25 H 1.08999 * 109.46429 * 299.99414 * 1 2 3 26 26 H 1.08991 * 109.47302 * 59.99482 * 1 2 3 27 27 H 1.09003 * 109.46738 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46979 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47763 * 300.00369 * 3 2 1 30 30 H 1.08999 * 109.47081 * 60.00986 * 3 2 1 31 31 H 1.08996 * 109.47185 * 299.99508 * 4 2 1 32 32 H 1.08995 * 109.47791 * 59.99672 * 4 2 1 33 33 H 1.09005 * 109.46862 * 179.97438 * 4 2 1 34 34 H 1.09003 * 109.46664 * 299.99801 * 5 2 1 35 35 H 1.08995 * 109.47361 * 179.97438 * 5 2 1 36 36 H 1.09004 * 109.46811 * 60.00144 * 6 5 2 37 37 H 1.09005 * 109.47229 * 300.00279 * 6 5 2 38 38 H 1.09003 * 109.46593 * 60.00151 * 7 6 5 39 39 H 1.08994 * 109.46870 * 300.00519 * 7 6 5 40 40 H 1.07995 * 120.02158 * 0.02706 * 13 12 11 41 41 H 1.07995 * 119.96131 * 180.02562 * 14 13 12 42 42 H 1.07997 * 119.93459 * 180.02562 * 15 14 13 43 43 H 1.09008 * 109.46800 * 134.99859 * 17 16 15 44 44 H 0.96693 * 114.00131 * 60.00404 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4839 -0.8781 -1.5213 5 6 2.4842 -0.8783 1.5210 6 6 1.9742 -2.3208 1.5210 7 6 2.4848 -3.0424 2.7698 8 16 1.8807 -4.7528 2.7693 9 8 0.4733 -4.7847 2.9635 10 8 2.4933 -5.4977 1.7257 11 8 2.4490 -5.3566 4.0456 12 6 1.8173 -4.9501 5.1785 13 6 0.7306 -5.6631 5.6618 14 6 0.0897 -5.2476 6.8135 15 6 0.5309 -4.1224 7.4845 16 6 1.6143 -3.4089 7.0052 17 6 2.0923 -2.1824 7.7388 18 8 1.6939 -1.0127 7.0212 19 14 1.3451 -2.1488 9.4451 20 1 1.7590 -3.3644 10.1908 21 1 1.8166 -0.9406 10.1683 22 1 -0.1356 -2.1150 9.3365 23 6 2.2623 -3.8231 5.8568 24 17 3.6270 -2.9318 5.2595 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.5740 1.7565 -0.0005 29 1 2.1206 2.2704 -0.8899 30 1 2.1208 2.2702 0.8901 31 1 2.1206 -1.9057 -1.5213 32 1 2.1206 -0.3643 -2.4112 33 1 3.5740 -0.8777 -1.5215 34 1 2.1209 -0.3645 2.4110 35 1 3.5741 -0.8787 1.5208 36 1 2.3375 -2.8346 0.6309 37 1 0.8841 -2.3208 1.5210 38 1 2.1218 -2.5287 3.6600 39 1 3.5747 -3.0423 2.7692 40 1 0.3855 -6.5425 5.1386 41 1 -0.7564 -5.8031 7.1903 42 1 0.0286 -3.8000 8.3845 43 1 3.1791 -2.2073 7.8186 44 1 0.7371 -0.9251 6.9120 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10544596_14927650.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:37:11 Heat of formation + Delta-G solvation = -154.193987 kcal Electronic energy + Delta-G solvation = -27802.187931 eV Core-core repulsion = 23804.280165 eV Total energy + Delta-G solvation = -3997.907765 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 366.073 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.45579 -40.01427 -38.53067 -37.93075 -37.49913 -37.41564 -35.87408 -32.78783 -31.68254 -29.63191 -28.45207 -28.30451 -28.26111 -27.08610 -25.01738 -23.40157 -22.96558 -21.41239 -19.70464 -19.05471 -18.87645 -18.34545 -17.70435 -17.12499 -16.89238 -16.26058 -16.01152 -15.69127 -15.58820 -15.04922 -14.83215 -14.66374 -14.52894 -14.20144 -14.08987 -13.99164 -13.80124 -13.64027 -13.58209 -13.49383 -13.44031 -13.38922 -13.19744 -13.16856 -13.06887 -13.05276 -12.98244 -12.59771 -12.43123 -12.12866 -11.94864 -11.81479 -11.68736 -11.59568 -10.71478 -10.68295 -10.50006 -10.46453 -10.23696 -10.07445 -1.25270 -0.32217 -0.23219 0.62165 0.83522 1.13059 1.46964 1.57620 1.90128 1.96265 2.01052 2.01919 2.10598 2.37202 2.71136 2.73111 3.09132 3.43862 3.55404 3.61326 3.68122 3.68672 3.78250 3.96893 4.13847 4.22706 4.34800 4.46367 4.61257 4.62522 4.70904 4.76097 4.81809 4.83666 4.86386 4.86543 4.88559 4.89228 4.95487 5.01724 5.07041 5.40754 5.45206 5.59416 5.66028 5.67808 6.71172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.469 4.469 2 Si 1.069 2.931 3 C -0.462 4.462 4 C -0.474 4.474 5 C -0.412 4.412 6 C -0.116 4.116 7 C -0.631 4.631 8 S 2.578 3.422 9 O -0.966 6.966 10 O -0.964 6.964 11 O -0.666 6.666 12 C 0.050 3.950 13 C -0.089 4.089 14 C -0.078 4.078 15 C -0.093 4.093 16 C -0.096 4.096 17 C -0.092 4.092 18 O -0.540 6.540 19 Si 0.986 3.014 20 H -0.252 1.252 21 H -0.274 1.274 22 H -0.226 1.226 23 C -0.044 4.044 24 Cl -0.035 7.035 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.154 0.846 39 H 0.149 0.851 40 H 0.157 0.843 41 H 0.185 0.815 42 H 0.172 0.828 43 H 0.120 0.880 44 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.290 3.292 5.880 7.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.575 4.575 2 Si 1.261 2.739 3 C -0.569 4.569 4 C -0.579 4.579 5 C -0.497 4.497 6 C -0.154 4.154 7 C -0.762 4.762 8 S 2.679 3.321 9 O -0.965 6.965 10 O -0.963 6.963 11 O -0.625 6.625 12 C 0.008 3.992 13 C -0.110 4.110 14 C -0.095 4.095 15 C -0.112 4.112 16 C -0.098 4.098 17 C -0.201 4.201 18 O -0.347 6.347 19 Si 0.807 3.193 20 H -0.175 1.175 21 H -0.199 1.199 22 H -0.149 1.149 23 C -0.074 4.074 24 Cl -0.006 7.006 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.109 0.891 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.110 0.890 38 H 0.172 0.828 39 H 0.167 0.833 40 H 0.175 0.825 41 H 0.203 0.797 42 H 0.189 0.811 43 H 0.138 0.862 44 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -3.030 2.678 6.392 7.564 hybrid contribution 0.602 0.178 -0.969 1.155 sum -2.428 2.857 5.423 6.593 Atomic orbital electron populations 1.26354 1.21984 1.04518 1.04631 0.78296 0.65550 0.65321 0.64686 1.26266 1.06325 1.19857 1.04457 1.26428 1.06508 1.08403 1.16594 1.26285 1.06701 0.99493 1.17215 1.21227 1.02406 0.97832 0.93956 1.31262 1.14123 1.20590 1.10204 1.05955 0.74283 0.78578 0.73324 1.93607 1.32314 1.87059 1.83507 1.93600 1.78091 1.69977 1.54585 1.85724 1.70378 1.76508 1.29851 1.18143 0.96507 0.96792 0.87771 1.21723 0.92196 0.99835 0.97208 1.21631 0.99787 0.95839 0.92276 1.21755 0.94354 0.94426 1.00648 1.20435 0.96333 0.99133 0.93874 1.25294 1.06390 0.82532 1.05912 1.86564 1.29964 1.40190 1.78003 0.85190 0.80796 0.80541 0.72805 1.17520 1.19907 1.14900 1.21154 0.93837 0.94248 0.98112 1.98415 1.42013 1.73856 1.86313 0.90831 0.91351 0.91278 0.91334 0.91435 0.91046 0.91392 0.91337 0.91236 0.89078 0.89616 0.89658 0.89016 0.82772 0.83269 0.82516 0.79724 0.81094 0.86218 0.75865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 1.38 8.65 113.37 0.98 2.36 16 2 Si 1.07 -5.63 12.19 68.60 0.84 -4.79 16 3 C -0.46 1.44 8.65 113.37 0.98 2.42 16 4 C -0.47 0.85 8.65 113.37 0.98 1.83 16 5 C -0.41 1.67 4.45 71.98 0.32 1.99 16 6 C -0.12 0.13 4.59 30.59 0.14 0.27 16 7 C -0.63 -0.42 4.01 71.98 0.29 -0.13 16 8 S 2.58 18.83 5.17 -56.49 -0.29 18.54 16 9 O -0.97 -9.18 16.26 -118.57 -1.93 -11.10 16 10 O -0.96 -13.97 18.09 -118.57 -2.15 -16.12 16 11 O -0.67 -4.65 9.58 -61.77 -0.59 -5.24 16 12 C 0.05 0.18 4.79 22.52 0.11 0.29 16 13 C -0.09 0.02 9.05 22.36 0.20 0.22 16 14 C -0.08 0.51 10.04 22.26 0.22 0.74 16 15 C -0.09 0.68 8.66 22.28 0.19 0.87 16 16 C -0.10 0.33 5.26 -19.86 -0.10 0.23 16 17 C -0.09 0.47 2.09 71.23 0.15 0.62 16 18 O -0.54 2.54 12.84 -148.98 -1.91 0.63 16 19 Si 0.99 -7.14 25.49 68.60 1.75 -5.40 16 20 H -0.25 1.52 7.11 99.48 0.71 2.23 16 21 H -0.27 0.68 7.11 99.48 0.71 1.39 16 22 H -0.23 2.36 6.73 99.48 0.67 3.03 16 23 C -0.04 -0.05 5.61 22.41 0.13 0.08 16 24 Cl -0.04 -0.05 22.37 -2.72 -0.06 -0.11 16 25 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 26 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 27 H 0.07 -0.18 7.79 -2.39 -0.02 -0.19 16 28 H 0.07 -0.19 7.96 -2.38 -0.02 -0.21 16 29 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 30 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 31 H 0.07 -0.09 7.79 -2.39 -0.02 -0.10 16 32 H 0.07 -0.10 7.96 -2.39 -0.02 -0.12 16 33 H 0.07 -0.12 7.96 -2.38 -0.02 -0.14 16 34 H 0.09 -0.49 7.96 -2.39 -0.02 -0.51 16 35 H 0.09 -0.40 7.96 -2.39 -0.02 -0.42 16 36 H 0.08 -0.17 7.79 -2.39 -0.02 -0.19 16 37 H 0.09 -0.30 7.79 -2.38 -0.02 -0.32 16 38 H 0.15 -0.26 5.57 -2.39 -0.01 -0.28 16 39 H 0.15 -0.21 7.25 -2.39 -0.02 -0.23 16 40 H 0.16 -0.28 8.06 -2.91 -0.02 -0.30 16 41 H 0.19 -2.51 8.06 -2.91 -0.02 -2.53 16 42 H 0.17 -2.18 4.88 -2.91 -0.01 -2.20 16 43 H 0.12 -0.54 7.39 -2.38 -0.02 -0.56 16 44 H 0.39 -4.70 8.70 -74.06 -0.64 -5.34 16 Total: 0.00 -21.05 380.19 1.33 -19.72 By element: Atomic # 1 Polarization: -9.01 SS G_CDS: 1.08 Total: -7.92 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: 4.59 Total: 11.79 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -6.58 Total: -31.83 kcal Atomic # 14 Polarization: -12.77 SS G_CDS: 2.59 Total: -10.19 kcal Atomic # 16 Polarization: 18.83 SS G_CDS: -0.29 Total: 18.54 kcal Atomic # 17 Polarization: -0.05 SS G_CDS: -0.06 Total: -0.11 kcal Total: -21.05 1.33 -19.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10544596_14927650.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.471 kcal (2) G-P(sol) polarization free energy of solvation -21.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds