Wall clock time and date at job start Mon Mar 8 2021 10:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86299 * 109.47222 * 2 1 4 4 C 1.50704 * 109.47112 * 120.00118 * 2 1 3 5 5 C 1.38251 * 119.97401 * 255.00143 * 4 2 1 6 6 C 1.38277 * 120.11441 * 179.97438 * 5 4 2 7 7 C 1.38159 * 120.07981 * 0.02562 * 6 5 4 8 8 C 1.38708 * 119.95379 * 0.02562 * 7 6 5 9 9 O 1.35928 * 120.05584 * 180.02562 * 8 7 6 10 10 S 1.52190 * 114.00364 * 86.65734 * 9 8 7 11 11 O 1.42099 * 104.28020 * 168.64306 * 10 9 8 12 12 O 1.42104 * 104.27652 * 40.79009 * 10 9 8 13 13 C 1.81399 * 104.45018 * 284.72030 * 10 9 8 14 14 H 1.09002 * 112.85040 * 54.25009 * 13 10 9 15 15 C 1.53788 * 113.61305 * 185.44732 * 13 10 9 16 16 C 1.53780 * 87.07973 * 140.06274 * 15 13 10 17 17 H 1.08995 * 113.61324 * 219.93184 * 16 15 13 18 18 O 1.42907 * 113.61192 * 89.11505 * 16 15 13 19 19 C 1.42899 * 113.99973 * 150.00047 * 18 16 15 20 20 C 1.50699 * 109.47333 * 179.97438 * 19 18 16 21 21 C 1.38231 * 119.99769 * 89.99843 * 20 19 18 22 22 C 1.38233 * 119.99757 * 180.02562 * 21 20 19 23 23 C 1.38239 * 120.00250 * 0.25442 * 22 21 20 24 24 C 1.38244 * 119.99359 * 359.49034 * 23 22 21 25 25 C 1.38233 * 119.99584 * 269.97479 * 20 19 18 26 26 C 1.53780 * 87.08421 * 334.56657 * 16 15 13 27 27 C 1.38256 * 119.98122 * 75.29653 * 4 2 1 28 28 Cl 1.73599 * 120.03653 * 0.02562 * 27 4 2 29 29 H 0.96698 * 114.00394 * 299.99768 * 1 2 3 30 30 H 1.09004 * 109.47687 * 240.00091 * 2 1 3 31 31 H 1.48506 * 110.00256 * 178.67900 * 3 2 1 32 32 H 1.48495 * 110.00025 * 299.99744 * 3 2 1 33 33 H 1.07991 * 119.94593 * 359.97438 * 5 4 2 34 34 H 1.07997 * 119.96430 * 180.02562 * 6 5 4 35 35 H 1.07999 * 120.02231 * 179.97438 * 7 6 5 36 36 H 1.08997 * 113.61264 * 25.51304 * 15 13 10 37 37 H 1.09005 * 113.68772 * 254.62590 * 15 13 10 38 38 H 1.09002 * 109.46939 * 59.99387 * 19 18 16 39 39 H 1.09002 * 109.46739 * 300.00529 * 19 18 16 40 40 H 1.07997 * 120.00169 * 359.97438 * 21 20 19 41 41 H 1.08005 * 120.00004 * 179.97438 * 22 21 20 42 42 H 1.07998 * 120.00496 * 179.73015 * 23 22 21 43 43 H 1.07995 * 119.99418 * 180.26147 * 24 23 22 44 44 H 1.07993 * 120.00356 * 0.02562 * 25 20 19 45 45 H 1.08995 * 113.61785 * 139.97662 * 26 16 15 46 46 H 1.08991 * 113.61550 * 270.88749 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 1.2305 5 6 2.4537 0.0174 2.2834 6 6 2.9150 -0.6315 3.4140 7 6 2.8555 -2.0094 3.4944 8 6 2.3329 -2.7428 2.4394 9 8 2.2729 -4.0985 2.5164 10 16 1.0142 -4.6252 3.1906 11 8 1.0310 -6.0207 2.9230 12 8 -0.0250 -3.7957 2.6894 13 6 1.2822 -4.3125 4.9572 14 1 1.5203 -3.2705 5.1712 15 6 0.1789 -4.8902 5.8594 16 6 1.2968 -5.2908 6.8364 17 1 1.1475 -6.2691 7.2932 18 8 1.6142 -4.2754 7.7906 19 6 2.0849 -4.7803 9.0418 20 6 2.3880 -3.6293 9.9660 21 6 1.4027 -3.1343 10.7996 22 6 1.6806 -2.0781 11.6470 23 6 2.9423 -1.5135 11.6570 24 6 3.9292 -2.0120 10.8271 25 6 3.6516 -3.0688 9.9805 26 6 2.2415 -5.3130 5.6232 27 6 1.8750 -2.0900 1.3031 28 17 1.2266 -3.0042 -0.0225 29 1 -0.3934 0.4416 0.7650 30 1 1.7924 -0.5138 -0.8900 31 1 3.5346 1.7703 0.0322 32 1 1.5615 2.4678 -1.2085 33 1 2.5017 1.0945 2.2228 34 1 3.3223 -0.0605 4.2352 35 1 3.2164 -2.5153 4.3777 36 1 -0.3431 -5.7405 5.4207 37 1 -0.5002 -4.1364 6.2581 38 1 2.9909 -5.3644 8.8801 39 1 1.3192 -5.4141 9.4891 40 1 0.4155 -3.5722 10.7882 41 1 0.9106 -1.6911 12.2980 42 1 3.1582 -0.6855 12.3159 43 1 4.9161 -1.5736 10.8380 44 1 4.4213 -3.4555 9.3292 45 1 3.2284 -4.8996 5.8307 46 1 2.2834 -6.2789 5.1200 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_10544596_15608174.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:15:30 Heat of formation + Delta-G solvation = -83.410148 kcal Electronic energy + Delta-G solvation = -34824.916191 eV Core-core repulsion = 29994.934052 eV Total energy + Delta-G solvation = -4829.982139 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 411.072 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.37155 -40.91916 -40.07341 -39.97308 -38.26230 -37.62237 -37.50566 -37.15215 -37.10417 -32.90278 -32.77091 -31.90782 -31.66542 -27.76778 -27.20051 -27.17841 -26.50163 -24.92212 -23.59541 -23.43294 -22.39347 -21.77990 -21.07233 -19.60716 -19.25096 -18.72644 -18.28076 -18.00891 -17.85488 -17.55004 -17.22545 -16.77769 -16.67571 -16.39372 -16.07714 -15.90546 -15.63626 -15.46779 -15.38676 -14.98625 -14.70360 -14.55847 -14.40823 -14.20080 -14.12648 -13.97323 -13.72772 -13.68714 -13.57822 -13.45858 -13.31233 -13.23398 -13.18680 -13.08052 -12.67499 -12.39085 -12.28603 -12.17291 -12.09433 -12.00973 -11.88545 -11.74930 -11.29864 -10.73741 -10.56830 -10.33846 -10.00785 -9.92135 -9.86877 -5.16510 -1.14248 -0.34133 -0.25966 0.22602 0.40267 0.81857 1.01371 1.14278 1.53677 1.88578 2.00962 2.26520 2.48850 2.68311 2.85641 2.91916 3.08740 3.18155 3.29483 3.40737 3.49894 3.57415 3.60356 3.67562 3.76841 3.78600 3.85082 3.98479 4.01659 4.10642 4.14167 4.18502 4.23284 4.27594 4.37222 4.45492 4.50977 4.51709 4.57322 4.60433 4.61703 4.65342 4.72146 4.81620 4.86200 4.94907 5.02449 5.27530 5.44063 5.52123 5.54313 5.95855 6.01094 6.52784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.525 6.525 2 C -0.075 4.075 3 Si 0.692 3.308 4 C -0.098 4.098 5 C -0.086 4.086 6 C -0.089 4.089 7 C -0.117 4.117 8 C 0.078 3.922 9 O -0.656 6.656 10 S 2.586 3.414 11 O -0.918 6.918 12 O -0.936 6.936 13 C -0.641 4.641 14 H 0.159 0.841 15 C -0.108 4.108 16 C 0.079 3.921 17 H 0.090 0.910 18 O -0.356 6.356 19 C 0.101 3.899 20 C -0.095 4.095 21 C -0.098 4.098 22 C -0.123 4.123 23 C -0.112 4.112 24 C -0.123 4.123 25 C -0.099 4.099 26 C -0.131 4.131 27 C 0.008 3.992 28 Cl -0.023 7.023 29 H 0.380 0.620 30 H 0.120 0.880 31 H -0.252 1.252 32 H -0.248 1.248 33 H 0.150 0.850 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.123 0.877 41 H 0.125 0.875 42 H 0.124 0.876 43 H 0.125 0.875 44 H 0.122 0.878 45 H 0.095 0.905 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.465 4.581 7.848 9.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.330 6.330 2 C -0.185 4.185 3 Si 0.592 3.408 4 C -0.100 4.100 5 C -0.105 4.105 6 C -0.107 4.107 7 C -0.137 4.137 8 C 0.035 3.965 9 O -0.615 6.615 10 S 2.682 3.318 11 O -0.916 6.916 12 O -0.934 6.934 13 C -0.748 4.748 14 H 0.177 0.823 15 C -0.146 4.146 16 C 0.020 3.980 17 H 0.108 0.892 18 O -0.275 6.275 19 C 0.025 3.975 20 C -0.095 4.095 21 C -0.116 4.116 22 C -0.141 4.141 23 C -0.130 4.130 24 C -0.141 4.141 25 C -0.117 4.117 26 C -0.169 4.169 27 C -0.022 4.022 28 Cl 0.007 6.993 29 H 0.227 0.773 30 H 0.137 0.863 31 H -0.177 1.177 32 H -0.172 1.172 33 H 0.167 0.833 34 H 0.171 0.829 35 H 0.170 0.830 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.141 0.859 41 H 0.143 0.857 42 H 0.142 0.858 43 H 0.143 0.857 44 H 0.140 0.860 45 H 0.114 0.886 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.796 4.593 6.004 8.060 hybrid contribution 0.304 -1.009 0.374 1.118 sum 3.100 3.585 6.378 7.946 Atomic orbital electron populations 1.86606 1.15824 1.81661 1.48908 1.25251 0.86322 1.10425 0.96518 0.95002 0.81055 0.76736 0.88011 1.20349 1.00042 0.91244 0.98318 1.21223 0.96617 1.00279 0.92351 1.21143 0.98165 0.92936 0.98486 1.21470 0.99178 0.95121 0.97965 1.17743 1.05789 0.76941 0.95994 1.85744 1.65947 1.26768 1.83012 1.05883 0.73489 0.75250 0.77176 1.93654 1.84389 1.30631 1.82937 1.93692 1.56012 1.67986 1.75716 1.32242 1.08504 1.10240 1.23806 0.82347 1.22872 0.95178 1.01855 0.94736 1.22814 0.94463 0.92020 0.88746 0.89209 1.87966 1.85044 1.31511 1.22949 1.21453 0.99036 0.93807 0.83215 1.19544 0.94302 0.98139 0.97534 1.21091 0.98673 0.96318 0.95503 1.21209 0.97160 0.96533 0.99167 1.21277 0.93395 0.99609 0.98701 1.21197 0.99585 0.96859 0.96499 1.21068 0.96241 0.96023 0.98357 1.23251 0.98560 0.98185 0.96930 1.20946 0.98369 0.92422 0.90432 1.98434 1.83788 1.73086 1.44033 0.77268 0.86279 1.17665 1.17238 0.83292 0.82937 0.82955 0.87575 0.87917 0.91965 0.91875 0.85863 0.85708 0.85799 0.85750 0.85952 0.88637 0.86927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.36 12.84 -35.23 -0.45 -0.82 16 2 C -0.07 0.00 2.09 36.01 0.08 0.07 16 3 Si 0.69 -1.47 29.91 -169.99 -5.09 -6.55 16 4 C -0.10 -0.03 5.26 -104.61 -0.55 -0.58 16 5 C -0.09 0.23 8.66 -39.56 -0.34 -0.11 16 6 C -0.09 0.29 10.04 -39.60 -0.40 -0.11 16 7 C -0.12 0.17 8.49 -39.44 -0.33 -0.16 16 8 C 0.08 0.16 4.73 -39.20 -0.19 -0.03 16 9 O -0.66 -2.03 9.51 -51.84 -0.49 -2.52 16 10 S 2.59 7.77 5.09 -107.50 -0.55 7.22 16 11 O -0.92 -5.29 17.43 -67.04 -1.17 -6.46 16 12 O -0.94 -4.84 15.73 -67.04 -1.05 -5.90 16 13 C -0.64 0.52 3.72 -25.91 -0.10 0.42 16 14 H 0.16 -0.37 6.15 -51.93 -0.32 -0.69 16 15 C -0.11 0.15 7.50 -25.92 -0.19 -0.05 16 16 C 0.08 -0.13 4.38 -25.92 -0.11 -0.25 16 17 H 0.09 -0.30 7.87 -51.93 -0.41 -0.71 16 18 O -0.36 0.12 10.26 -35.23 -0.36 -0.24 16 19 C 0.10 -0.14 5.90 36.00 0.21 0.07 16 20 C -0.10 0.01 5.51 -104.63 -0.58 -0.57 16 21 C -0.10 0.01 9.70 -39.59 -0.38 -0.37 16 22 C -0.12 0.04 10.05 -39.58 -0.40 -0.36 16 23 C -0.11 0.05 10.05 -39.58 -0.40 -0.34 16 24 C -0.12 0.07 10.05 -39.58 -0.40 -0.33 16 25 C -0.10 0.03 9.70 -39.58 -0.38 -0.35 16 26 C -0.13 0.22 7.48 -25.92 -0.19 0.03 16 27 C 0.01 0.02 5.73 -39.36 -0.23 -0.20 16 28 Cl -0.02 -0.12 26.39 -51.86 -1.37 -1.49 16 29 H 0.38 -1.35 8.70 45.56 0.40 -0.95 16 30 H 0.12 0.13 7.39 -51.93 -0.38 -0.25 16 31 H -0.25 0.02 7.11 56.52 0.40 0.43 16 32 H -0.25 -0.32 7.11 56.52 0.40 0.08 16 33 H 0.15 -0.88 5.12 -52.49 -0.27 -1.15 16 34 H 0.15 -0.97 8.06 -52.49 -0.42 -1.39 16 35 H 0.15 -0.61 7.01 -52.49 -0.37 -0.98 16 36 H 0.11 -0.25 8.10 -51.93 -0.42 -0.67 16 37 H 0.10 -0.18 8.14 -51.93 -0.42 -0.61 16 38 H 0.06 -0.16 8.08 -51.93 -0.42 -0.58 16 39 H 0.06 -0.15 8.09 -51.93 -0.42 -0.57 16 40 H 0.12 -0.18 8.06 -52.49 -0.42 -0.60 16 41 H 0.12 -0.25 8.06 -52.48 -0.42 -0.67 16 42 H 0.12 -0.27 8.06 -52.49 -0.42 -0.69 16 43 H 0.12 -0.28 8.06 -52.49 -0.42 -0.70 16 44 H 0.12 -0.23 8.06 -52.49 -0.42 -0.65 16 45 H 0.10 -0.27 8.14 -51.93 -0.42 -0.69 16 46 H 0.11 -0.21 7.55 -51.93 -0.39 -0.60 16 LS Contribution 409.11 15.07 6.17 6.17 Total: 0.00 -11.63 409.11 -14.83 -26.46 By element: Atomic # 1 Polarization: -7.08 SS G_CDS: -5.58 Total: -12.67 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -4.88 Total: -3.21 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: -3.53 Total: -15.93 kcal Atomic # 14 Polarization: -1.47 SS G_CDS: -5.09 Total: -6.55 kcal Atomic # 16 Polarization: 7.77 SS G_CDS: -0.55 Total: 7.22 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -1.37 Total: -1.49 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -11.63 -14.83 -26.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10544596_15608174.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.947 kcal (2) G-P(sol) polarization free energy of solvation -11.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds