Wall clock time and date at job start Mon Mar 8 2021 10:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86299 * 109.47222 * 2 1 4 4 C 1.50704 * 109.47112 * 120.00118 * 2 1 3 5 5 C 1.38251 * 119.97401 * 255.00143 * 4 2 1 6 6 C 1.38277 * 120.11441 * 179.97438 * 5 4 2 7 7 C 1.38159 * 120.07981 * 0.02562 * 6 5 4 8 8 C 1.38708 * 119.95379 * 0.02562 * 7 6 5 9 9 O 1.35928 * 120.05584 * 180.02562 * 8 7 6 10 10 S 1.52190 * 114.00364 * 86.65734 * 9 8 7 11 11 O 1.42099 * 104.28020 * 168.64306 * 10 9 8 12 12 O 1.42104 * 104.27652 * 40.79009 * 10 9 8 13 13 C 1.81399 * 104.45018 * 284.72030 * 10 9 8 14 14 H 1.09002 * 112.85040 * 54.25009 * 13 10 9 15 15 C 1.53788 * 113.61305 * 185.44732 * 13 10 9 16 16 C 1.53780 * 87.07973 * 140.06274 * 15 13 10 17 17 H 1.08995 * 113.61324 * 219.93184 * 16 15 13 18 18 O 1.42907 * 113.61192 * 89.11505 * 16 15 13 19 19 C 1.42899 * 113.99973 * 150.00047 * 18 16 15 20 20 C 1.50699 * 109.47333 * 179.97438 * 19 18 16 21 21 C 1.38231 * 119.99769 * 89.99843 * 20 19 18 22 22 C 1.38233 * 119.99757 * 180.02562 * 21 20 19 23 23 C 1.38239 * 120.00250 * 0.25442 * 22 21 20 24 24 C 1.38244 * 119.99359 * 359.49034 * 23 22 21 25 25 C 1.38233 * 119.99584 * 269.97479 * 20 19 18 26 26 C 1.53780 * 87.08421 * 334.56657 * 16 15 13 27 27 C 1.38256 * 119.98122 * 75.29653 * 4 2 1 28 28 Cl 1.73599 * 120.03653 * 0.02562 * 27 4 2 29 29 H 0.96698 * 114.00394 * 299.99768 * 1 2 3 30 30 H 1.09004 * 109.47687 * 240.00091 * 2 1 3 31 31 H 1.48506 * 110.00256 * 178.67900 * 3 2 1 32 32 H 1.48495 * 110.00025 * 299.99744 * 3 2 1 33 33 H 1.07991 * 119.94593 * 359.97438 * 5 4 2 34 34 H 1.07997 * 119.96430 * 180.02562 * 6 5 4 35 35 H 1.07999 * 120.02231 * 179.97438 * 7 6 5 36 36 H 1.08997 * 113.61264 * 25.51304 * 15 13 10 37 37 H 1.09005 * 113.68772 * 254.62590 * 15 13 10 38 38 H 1.09002 * 109.46939 * 59.99387 * 19 18 16 39 39 H 1.09002 * 109.46739 * 300.00529 * 19 18 16 40 40 H 1.07997 * 120.00169 * 359.97438 * 21 20 19 41 41 H 1.08005 * 120.00004 * 179.97438 * 22 21 20 42 42 H 1.07998 * 120.00496 * 179.73015 * 23 22 21 43 43 H 1.07995 * 119.99418 * 180.26147 * 24 23 22 44 44 H 1.07993 * 120.00356 * 0.02562 * 25 20 19 45 45 H 1.08995 * 113.61785 * 139.97662 * 26 16 15 46 46 H 1.08991 * 113.61550 * 270.88749 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 1.2305 5 6 2.4537 0.0174 2.2834 6 6 2.9150 -0.6315 3.4140 7 6 2.8555 -2.0094 3.4944 8 6 2.3329 -2.7428 2.4394 9 8 2.2729 -4.0985 2.5164 10 16 1.0142 -4.6252 3.1906 11 8 1.0310 -6.0207 2.9230 12 8 -0.0250 -3.7957 2.6894 13 6 1.2822 -4.3125 4.9572 14 1 1.5203 -3.2705 5.1712 15 6 0.1789 -4.8902 5.8594 16 6 1.2968 -5.2908 6.8364 17 1 1.1475 -6.2691 7.2932 18 8 1.6142 -4.2754 7.7906 19 6 2.0849 -4.7803 9.0418 20 6 2.3880 -3.6293 9.9660 21 6 1.4027 -3.1343 10.7996 22 6 1.6806 -2.0781 11.6470 23 6 2.9423 -1.5135 11.6570 24 6 3.9292 -2.0120 10.8271 25 6 3.6516 -3.0688 9.9805 26 6 2.2415 -5.3130 5.6232 27 6 1.8750 -2.0900 1.3031 28 17 1.2266 -3.0042 -0.0225 29 1 -0.3934 0.4416 0.7650 30 1 1.7924 -0.5138 -0.8900 31 1 3.5346 1.7703 0.0322 32 1 1.5615 2.4678 -1.2085 33 1 2.5017 1.0945 2.2228 34 1 3.3223 -0.0605 4.2352 35 1 3.2164 -2.5153 4.3777 36 1 -0.3431 -5.7405 5.4207 37 1 -0.5002 -4.1364 6.2581 38 1 2.9909 -5.3644 8.8801 39 1 1.3192 -5.4141 9.4891 40 1 0.4155 -3.5722 10.7882 41 1 0.9106 -1.6911 12.2980 42 1 3.1582 -0.6855 12.3159 43 1 4.9161 -1.5736 10.8380 44 1 4.4213 -3.4555 9.3292 45 1 3.2284 -4.8996 5.8307 46 1 2.2834 -6.2789 5.1200 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10544596_15608174.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:15:29 Heat of formation + Delta-G solvation = -84.484631 kcal Electronic energy + Delta-G solvation = -34824.962784 eV Core-core repulsion = 29994.934052 eV Total energy + Delta-G solvation = -4830.028732 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 411.072 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -42.40212 -40.79244 -39.98260 -39.91706 -38.51677 -37.76557 -37.52901 -37.37070 -37.01773 -32.81393 -32.64452 -31.77792 -31.59937 -27.68002 -27.10027 -27.04806 -26.40583 -24.90887 -23.46897 -23.34820 -22.25825 -21.79915 -21.00344 -19.67746 -19.28845 -18.82733 -18.27750 -17.93900 -17.76551 -17.42051 -17.15912 -16.67509 -16.60837 -16.34710 -16.07393 -15.85465 -15.61176 -15.35437 -15.28626 -14.94267 -14.69811 -14.54236 -14.26845 -14.17057 -14.15693 -13.87410 -13.80390 -13.62932 -13.58133 -13.40651 -13.37737 -13.33936 -13.19309 -13.14213 -12.76337 -12.45912 -12.14951 -12.11391 -12.03399 -11.85577 -11.82008 -11.73616 -11.26398 -10.58009 -10.52733 -10.25435 -10.00689 -9.81249 -9.75714 -5.02922 -1.23751 -0.25997 -0.22040 0.33829 0.51095 0.69978 0.94659 1.23005 1.66390 1.99360 2.13694 2.38908 2.42315 2.64704 2.87944 2.99208 3.16419 3.25168 3.44275 3.54658 3.59866 3.70520 3.73972 3.82922 3.92681 3.95060 4.01124 4.16451 4.19191 4.22218 4.31327 4.36938 4.40232 4.42049 4.47284 4.62270 4.64046 4.68018 4.72613 4.74188 4.77622 4.82064 4.84250 4.97851 5.02501 5.09571 5.16701 5.47037 5.56439 5.63952 5.66126 6.10037 6.17661 6.75669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.098 4.098 3 Si 0.812 3.188 4 C -0.108 4.108 5 C -0.078 4.078 6 C -0.074 4.074 7 C -0.116 4.116 8 C 0.049 3.951 9 O -0.666 6.666 10 S 2.577 3.423 11 O -0.961 6.961 12 O -0.969 6.969 13 C -0.614 4.614 14 H 0.180 0.820 15 C -0.118 4.118 16 C 0.082 3.918 17 H 0.109 0.891 18 O -0.367 6.367 19 C 0.099 3.901 20 C -0.106 4.106 21 C -0.112 4.112 22 C -0.135 4.135 23 C -0.124 4.124 24 C -0.133 4.133 25 C -0.109 4.109 26 C -0.133 4.133 27 C -0.026 4.026 28 Cl -0.064 7.064 29 H 0.396 0.604 30 H 0.096 0.904 31 H -0.271 1.271 32 H -0.300 1.300 33 H 0.187 0.813 34 H 0.198 0.802 35 H 0.181 0.819 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.131 0.869 41 H 0.135 0.865 42 H 0.137 0.863 43 H 0.139 0.861 44 H 0.136 0.864 45 H 0.113 0.887 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.944 6.504 10.813 13.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.205 4.205 3 Si 0.714 3.286 4 C -0.110 4.110 5 C -0.096 4.096 6 C -0.091 4.091 7 C -0.135 4.135 8 C 0.007 3.993 9 O -0.625 6.625 10 S 2.678 3.322 11 O -0.960 6.960 12 O -0.968 6.968 13 C -0.726 4.726 14 H 0.197 0.803 15 C -0.157 4.157 16 C 0.022 3.978 17 H 0.126 0.874 18 O -0.286 6.286 19 C 0.023 3.977 20 C -0.107 4.107 21 C -0.130 4.130 22 C -0.153 4.153 23 C -0.142 4.142 24 C -0.151 4.151 25 C -0.127 4.127 26 C -0.172 4.172 27 C -0.055 4.055 28 Cl -0.035 7.035 29 H 0.246 0.754 30 H 0.113 0.887 31 H -0.197 1.197 32 H -0.228 1.228 33 H 0.204 0.796 34 H 0.215 0.785 35 H 0.198 0.802 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.148 0.852 41 H 0.153 0.847 42 H 0.154 0.846 43 H 0.157 0.843 44 H 0.154 0.846 45 H 0.132 0.868 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 4.249 6.473 8.951 11.835 hybrid contribution -0.134 -1.544 -0.489 1.625 sum 4.116 4.929 8.462 10.623 Atomic orbital electron populations 1.86560 1.16566 1.82344 1.50181 1.25689 0.86111 1.12797 0.95912 0.93786 0.77700 0.71888 0.85227 1.20546 1.00668 0.90348 0.99388 1.21684 0.94701 1.01938 0.91231 1.21737 0.96028 0.92263 0.99083 1.21919 0.98032 0.96012 0.97586 1.18219 1.07452 0.76573 0.97046 1.85700 1.65347 1.27845 1.83634 1.05983 0.73081 0.74118 0.78988 1.93586 1.85016 1.32817 1.84541 1.93638 1.57443 1.68123 1.77575 1.32094 1.09668 1.11833 1.18966 0.80278 1.23070 0.95522 1.02384 0.94719 1.22826 0.93771 0.92653 0.88522 0.87356 1.87937 1.85173 1.32163 1.23351 1.21536 0.99905 0.93504 0.82738 1.19771 0.94470 0.98593 0.97818 1.21309 0.99250 0.96654 0.95825 1.21450 0.97712 0.96703 0.99465 1.21536 0.93473 1.00114 0.99072 1.21465 1.00293 0.96951 0.96383 1.21313 0.96579 0.96117 0.98653 1.23382 0.99328 0.97925 0.96520 1.21318 1.00561 0.93484 0.90186 1.98402 1.84692 1.74248 1.46160 0.75363 0.88660 1.19670 1.22807 0.79599 0.78468 0.80221 0.87079 0.87320 0.90731 0.91038 0.85154 0.84676 0.84552 0.84330 0.84636 0.86832 0.87072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.68 12.84 -148.98 -1.91 -3.59 16 2 C -0.10 -0.12 2.09 71.24 0.15 0.03 16 3 Si 0.81 -4.08 29.91 68.60 2.05 -2.03 16 4 C -0.11 -0.09 5.26 -19.86 -0.10 -0.20 16 5 C -0.08 0.61 8.66 22.28 0.19 0.80 16 6 C -0.07 0.74 10.04 22.26 0.22 0.97 16 7 C -0.12 0.56 8.49 22.36 0.19 0.75 16 8 C 0.05 0.24 4.73 22.52 0.11 0.34 16 9 O -0.67 -5.36 9.51 -61.83 -0.59 -5.95 16 10 S 2.58 20.26 5.09 -56.49 -0.29 19.97 16 11 O -0.96 -13.84 17.43 -118.57 -2.07 -15.90 16 12 O -0.97 -12.67 15.73 -118.57 -1.86 -14.54 16 13 C -0.61 1.41 3.72 31.12 0.12 1.52 16 14 H 0.18 -1.19 6.15 -2.39 -0.01 -1.21 16 15 C -0.12 0.40 7.50 31.12 0.23 0.63 16 16 C 0.08 -0.41 4.38 31.12 0.14 -0.28 16 17 H 0.11 -0.93 7.87 -2.39 -0.02 -0.95 16 18 O -0.37 1.02 10.26 -148.98 -1.53 -0.50 16 19 C 0.10 -0.45 5.90 71.24 0.42 -0.03 16 20 C -0.11 0.15 5.51 -19.87 -0.11 0.04 16 21 C -0.11 0.10 9.70 22.27 0.22 0.32 16 22 C -0.14 0.18 10.05 22.27 0.22 0.40 16 23 C -0.12 0.23 10.05 22.27 0.22 0.45 16 24 C -0.13 0.31 10.05 22.27 0.22 0.53 16 25 C -0.11 0.24 9.70 22.27 0.22 0.45 16 26 C -0.13 0.63 7.48 31.12 0.23 0.86 16 27 C -0.03 -0.21 5.73 22.41 0.13 -0.08 16 28 Cl -0.06 -0.90 26.39 -2.72 -0.07 -0.97 16 29 H 0.40 -2.52 8.70 -74.06 -0.64 -3.17 16 30 H 0.10 0.49 7.39 -2.38 -0.02 0.47 16 31 H -0.27 0.53 7.11 99.48 0.71 1.23 16 32 H -0.30 -1.05 7.11 99.48 0.71 -0.34 16 33 H 0.19 -2.96 5.12 -2.92 -0.01 -2.98 16 34 H 0.20 -3.69 8.06 -2.91 -0.02 -3.72 16 35 H 0.18 -2.01 7.01 -2.91 -0.02 -2.03 16 36 H 0.11 -0.49 8.10 -2.39 -0.02 -0.51 16 37 H 0.11 -0.48 8.14 -2.38 -0.02 -0.50 16 38 H 0.07 -0.54 8.08 -2.39 -0.02 -0.55 16 39 H 0.07 -0.46 8.09 -2.39 -0.02 -0.48 16 40 H 0.13 -0.45 8.06 -2.91 -0.02 -0.47 16 41 H 0.14 -0.61 8.06 -2.91 -0.02 -0.63 16 42 H 0.14 -0.73 8.06 -2.91 -0.02 -0.75 16 43 H 0.14 -0.84 8.06 -2.91 -0.02 -0.87 16 44 H 0.14 -0.77 8.06 -2.91 -0.02 -0.79 16 45 H 0.11 -0.92 8.14 -2.39 -0.02 -0.94 16 46 H 0.11 -0.44 7.55 -2.39 -0.02 -0.46 16 Total: 0.00 -32.81 409.11 -2.82 -35.63 By element: Atomic # 1 Polarization: -20.08 SS G_CDS: 0.43 Total: -19.65 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: 3.02 Total: 7.53 kcal Atomic # 8 Polarization: -32.52 SS G_CDS: -7.96 Total: -40.49 kcal Atomic # 14 Polarization: -4.08 SS G_CDS: 2.05 Total: -2.03 kcal Atomic # 16 Polarization: 20.26 SS G_CDS: -0.29 Total: 19.97 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -0.07 Total: -0.97 kcal Total: -32.81 -2.82 -35.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10544596_15608174.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.856 kcal (2) G-P(sol) polarization free energy of solvation -32.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds