Wall clock time and date at job start Mon Mar 8 2021 08:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 114.00114 * 2 1 4 4 C 1.53001 * 112.84961 * 294.00982 * 3 2 1 5 5 F 1.39897 * 109.46989 * 195.95198 * 4 3 2 6 6 F 1.39899 * 109.46869 * 315.95177 * 4 3 2 7 7 F 1.39905 * 109.47002 * 75.95058 * 4 3 2 8 8 C 1.54054 * 113.68940 * 162.73318 * 3 2 1 9 9 C 1.53780 * 86.98840 * 270.87611 * 8 3 2 10 10 H 1.08997 * 113.61226 * 219.98040 * 9 8 3 11 11 C 1.52992 * 113.61573 * 89.16017 * 9 8 3 12 12 S 1.81407 * 109.47123 * 85.86418 * 11 9 8 13 13 O 1.42100 * 110.53848 * 68.37371 * 12 11 9 14 14 O 1.42098 * 110.53957 * 291.62235 * 12 11 9 15 15 O 1.52204 * 104.45008 * 179.97438 * 12 11 9 16 16 C 1.35920 * 113.99775 * 75.00126 * 15 12 11 17 17 C 1.38815 * 120.06357 * 90.00041 * 16 15 12 18 18 Cl 1.73600 * 120.03450 * 359.97438 * 17 16 15 19 19 C 1.38249 * 119.92602 * 180.02562 * 17 16 15 20 20 C 1.50707 * 119.97802 * 179.97438 * 19 17 16 21 21 O 1.42895 * 109.47092 * 284.99632 * 20 19 17 22 22 Si 1.86305 * 109.46970 * 164.99881 * 20 19 17 23 23 C 1.38247 * 120.04430 * 0.25439 * 19 17 16 24 24 C 1.38279 * 120.11472 * 359.48930 * 23 19 17 25 25 C 1.38149 * 120.08111 * 0.51003 * 24 23 19 26 26 C 1.53781 * 113.61278 * 65.20577 * 3 2 1 27 27 H 1.09005 * 109.47115 * 184.82910 * 1 2 3 28 28 H 1.08997 * 109.47526 * 304.83360 * 1 2 3 29 29 H 1.08999 * 109.46607 * 64.83409 * 1 2 3 30 30 H 1.09003 * 113.60988 * 156.36499 * 8 3 2 31 31 H 1.08999 * 113.69197 * 25.39043 * 8 3 2 32 32 H 1.09001 * 109.47251 * 325.86658 * 11 9 8 33 33 H 1.09000 * 109.47416 * 205.86459 * 11 9 8 34 34 H 1.08999 * 109.47249 * 45.00134 * 20 19 17 35 35 H 0.96696 * 113.99920 * 179.97438 * 21 20 19 36 36 H 1.48500 * 109.99949 * 60.00059 * 22 20 19 37 37 H 1.48502 * 109.99884 * 181.32022 * 22 20 19 38 38 H 1.07995 * 119.94270 * 179.72423 * 23 19 17 39 39 H 1.08002 * 119.95910 * 180.25909 * 24 23 19 40 40 H 1.07993 * 120.02288 * 179.71987 * 25 24 23 41 41 H 1.08994 * 113.61927 * 334.65310 * 26 3 2 42 42 H 1.09004 * 113.61274 * 203.74914 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.7278 2.0816 -1.2880 5 9 2.6027 3.1695 -1.3781 6 9 1.9148 1.2401 -2.3899 7 9 0.4077 2.5445 -1.2734 8 6 3.4927 1.3229 0.4187 9 6 2.9981 1.4841 1.8659 10 1 3.5936 2.1808 2.4558 11 6 2.7565 0.1542 2.5827 12 16 4.3101 -0.4284 3.3159 13 8 4.7042 0.4181 4.3870 14 8 5.2312 -0.8024 2.3006 15 8 3.9421 -1.7416 3.9918 16 6 3.7595 -2.7755 3.1286 17 6 4.8308 -3.5848 2.7763 18 17 6.4063 -3.2774 3.4374 19 6 4.6420 -4.6353 1.8976 20 6 5.8044 -5.5144 1.5140 21 8 6.6482 -4.8150 0.5971 22 14 5.1678 -7.0696 0.7096 23 6 3.3887 -4.8764 1.3662 24 6 2.3191 -4.0745 1.7199 25 6 2.5022 -3.0234 2.5976 26 6 1.7210 2.1085 1.2792 27 1 -0.3633 -1.0241 0.0865 28 1 -0.3634 0.5870 0.8435 29 1 -0.3632 0.4370 -0.9301 30 1 4.0415 2.1878 0.0459 31 1 4.0104 0.3812 0.2366 32 1 2.3933 -0.5835 1.8672 33 1 2.0141 0.2945 3.3684 34 1 6.3738 -5.7739 2.4064 35 1 7.4189 -5.3217 0.3069 36 1 4.3896 -6.7294 -0.5086 37 1 6.3028 -7.9593 0.3553 38 1 3.2440 -5.6947 0.6765 39 1 1.3403 -4.2676 1.3065 40 1 1.6672 -2.3950 2.8697 41 1 0.8095 1.8006 1.7913 42 1 1.7863 3.1878 1.1412 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10544596_17541816.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:04:04 Heat of formation + Delta-G solvation = -257.442470 kcal Electronic energy + Delta-G solvation = -38697.338420 eV Core-core repulsion = 32964.352308 eV Total energy + Delta-G solvation = -5732.986112 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 417.044 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -51.26391 -48.80161 -48.73320 -42.36109 -41.46089 -39.86853 -38.46799 -37.71160 -37.62381 -37.39591 -37.24693 -32.95444 -31.77695 -31.55454 -28.38337 -27.88095 -27.06345 -26.79857 -24.93871 -23.79077 -23.04417 -21.61025 -20.73152 -19.96517 -19.59738 -19.47118 -19.25483 -18.86085 -18.63609 -18.51774 -18.03483 -17.35745 -17.11616 -16.63847 -16.41766 -15.94120 -15.78416 -15.66743 -15.63538 -15.59664 -15.36085 -15.26598 -15.15080 -14.92500 -14.90494 -14.76477 -14.66179 -14.44081 -14.30400 -13.97171 -13.82771 -13.63786 -13.47375 -13.29222 -13.26849 -13.17659 -13.03715 -12.91802 -12.63671 -12.54898 -12.35209 -12.20072 -12.12275 -11.91576 -11.81826 -11.43999 -10.81868 -10.52774 -10.20955 -9.94795 -4.92452 -1.23262 -0.21285 -0.15843 0.75806 0.99886 1.24348 1.51506 1.61166 1.93150 2.07461 2.17311 2.41328 2.53234 2.59687 2.78004 2.82434 3.09056 3.14855 3.21467 3.29878 3.48428 3.50855 3.64404 3.72495 3.89719 3.95144 4.04421 4.14013 4.20749 4.31514 4.39180 4.41175 4.45423 4.48109 4.54788 4.66113 4.69218 4.75565 4.77155 4.87090 4.87671 5.01234 5.09407 5.50507 5.72585 6.54420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.002 4.002 2 O -0.340 6.340 3 C 0.042 3.958 4 C 0.432 3.568 5 F -0.179 7.179 6 F -0.188 7.188 7 F -0.182 7.182 8 C -0.139 4.139 9 C -0.099 4.099 10 H 0.117 0.883 11 C -0.619 4.619 12 S 2.574 3.426 13 O -0.966 6.966 14 O -0.963 6.963 15 O -0.663 6.663 16 C 0.046 3.954 17 C -0.021 4.021 18 Cl -0.059 7.059 19 C -0.067 4.067 20 C -0.108 4.108 21 O -0.550 6.550 22 Si 0.791 3.209 23 C -0.089 4.089 24 C -0.075 4.075 25 C -0.105 4.105 26 C -0.125 4.125 27 H 0.126 0.874 28 H 0.075 0.925 29 H 0.040 0.960 30 H 0.129 0.871 31 H 0.097 0.903 32 H 0.168 0.832 33 H 0.184 0.816 34 H 0.082 0.918 35 H 0.394 0.606 36 H -0.270 1.270 37 H -0.288 1.288 38 H 0.169 0.831 39 H 0.196 0.804 40 H 0.190 0.810 41 H 0.122 0.878 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.609 -5.078 0.109 10.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 O -0.258 6.258 3 C -0.001 4.001 4 C 0.377 3.623 5 F -0.160 7.160 6 F -0.169 7.169 7 F -0.163 7.163 8 C -0.176 4.176 9 C -0.118 4.118 10 H 0.135 0.865 11 C -0.749 4.749 12 S 2.674 3.326 13 O -0.964 6.964 14 O -0.962 6.962 15 O -0.622 6.622 16 C 0.004 3.996 17 C -0.050 4.050 18 Cl -0.029 7.029 19 C -0.068 4.068 20 C -0.214 4.214 21 O -0.359 6.359 22 Si 0.692 3.308 23 C -0.107 4.107 24 C -0.092 4.092 25 C -0.125 4.125 26 C -0.164 4.164 27 H 0.144 0.856 28 H 0.093 0.907 29 H 0.058 0.942 30 H 0.147 0.853 31 H 0.115 0.885 32 H 0.185 0.815 33 H 0.202 0.798 34 H 0.100 0.900 35 H 0.245 0.755 36 H -0.197 1.197 37 H -0.215 1.215 38 H 0.186 0.814 39 H 0.214 0.786 40 H 0.207 0.793 41 H 0.140 0.860 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.090 -5.258 -0.016 10.501 hybrid contribution 1.272 1.286 -0.725 1.949 sum -7.818 -3.972 -0.741 8.801 Atomic orbital electron populations 1.23413 0.78304 1.06141 1.01838 1.88037 1.22389 1.21620 1.93784 1.24053 0.99502 0.86815 0.89685 1.21522 0.74206 0.78693 0.87862 1.93172 1.69451 1.56762 1.96636 1.93191 1.94887 1.71226 1.57613 1.93189 1.36594 1.89669 1.96847 1.23655 0.92007 1.06658 0.95282 1.21809 1.00238 0.94441 0.95344 0.86467 1.30681 1.21625 1.08115 1.14499 1.06010 0.78467 0.73927 0.74173 1.93602 1.81963 1.66147 1.54707 1.93674 1.61608 1.79300 1.61584 1.85726 1.90132 1.34120 1.52219 1.18171 0.95121 0.90720 0.95604 1.21272 0.86364 0.97840 0.99502 1.98393 1.25396 1.94981 1.84167 1.19422 0.96392 0.95047 0.95946 1.25371 0.93491 1.04282 0.98294 1.86605 1.40712 1.44754 1.63865 0.94021 0.82077 0.72991 0.81702 1.21729 0.90758 1.00399 0.97822 1.21658 1.01284 0.91774 0.94519 1.21905 0.93980 1.00381 0.96227 1.23645 0.99426 1.01383 0.91914 0.85589 0.90696 0.94175 0.85272 0.88470 0.81452 0.79802 0.90000 0.75544 1.19685 1.21545 0.81377 0.78646 0.79305 0.85988 0.85872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.02 10.30 113.37 1.17 1.18 16 2 O -0.34 1.40 8.35 -148.98 -1.24 0.15 16 3 C 0.04 -0.12 0.85 -10.17 -0.01 -0.13 16 4 C 0.43 0.58 2.52 71.98 0.18 0.76 16 5 F -0.18 -0.42 15.81 44.97 0.71 0.29 16 6 F -0.19 -1.05 17.10 44.97 0.77 -0.28 16 7 F -0.18 -0.17 15.40 44.97 0.69 0.52 16 8 C -0.14 0.22 6.92 31.21 0.22 0.44 16 9 C -0.10 0.47 3.83 -10.27 -0.04 0.43 16 10 H 0.12 -0.70 8.14 -2.39 -0.02 -0.72 16 11 C -0.62 3.53 5.06 71.98 0.36 3.89 16 12 S 2.57 15.12 5.14 -56.49 -0.29 14.83 16 13 O -0.97 -12.80 18.09 -118.57 -2.15 -14.95 16 14 O -0.96 -11.07 14.99 -118.57 -1.78 -12.85 16 15 O -0.66 -3.69 9.51 -61.74 -0.59 -4.28 16 16 C 0.05 0.14 4.79 22.52 0.11 0.25 16 17 C -0.02 -0.14 5.65 22.41 0.13 -0.02 16 18 Cl -0.06 -0.69 25.90 -2.72 -0.07 -0.76 16 19 C -0.07 -0.14 5.29 -19.86 -0.11 -0.24 16 20 C -0.11 -0.06 2.08 71.24 0.15 0.09 16 21 O -0.55 -2.42 12.80 -148.98 -1.91 -4.33 16 22 Si 0.79 -3.96 30.21 68.60 2.07 -1.89 16 23 C -0.09 0.45 8.66 22.28 0.19 0.64 16 24 C -0.07 0.72 10.04 22.26 0.22 0.94 16 25 C -0.11 0.69 8.46 22.36 0.19 0.87 16 26 C -0.13 0.97 6.51 31.12 0.20 1.17 16 27 H 0.13 -1.74 8.14 -2.38 -0.02 -1.76 16 28 H 0.07 -0.94 6.55 -2.39 -0.02 -0.95 16 29 H 0.04 -0.22 6.69 -2.39 -0.02 -0.24 16 30 H 0.13 -0.40 7.02 -2.39 -0.02 -0.42 16 31 H 0.10 0.11 7.91 -2.39 -0.02 0.09 16 32 H 0.17 -1.39 4.55 -2.39 -0.01 -1.40 16 33 H 0.18 -2.43 8.14 -2.39 -0.02 -2.45 16 34 H 0.08 -0.03 7.41 -2.39 -0.02 -0.04 16 35 H 0.39 -1.35 8.74 -74.06 -0.65 -2.00 16 36 H -0.27 0.43 6.74 99.48 0.67 1.10 16 37 H -0.29 -0.06 7.11 99.48 0.71 0.64 16 38 H 0.17 -1.62 4.89 -2.91 -0.01 -1.64 16 39 H 0.20 -3.59 8.06 -2.91 -0.02 -3.62 16 40 H 0.19 -2.84 7.49 -2.91 -0.02 -2.86 16 41 H 0.12 -1.50 6.63 -2.39 -0.02 -1.52 16 42 H 0.12 -1.14 8.05 -2.38 -0.02 -1.16 16 Total: 0.00 -31.83 376.51 -0.33 -32.16 By element: Atomic # 1 Polarization: -19.41 SS G_CDS: 0.48 Total: -18.93 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: 2.97 Total: 10.29 kcal Atomic # 8 Polarization: -28.59 SS G_CDS: -7.66 Total: -36.25 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 2.17 Total: 0.54 kcal Atomic # 14 Polarization: -3.96 SS G_CDS: 2.07 Total: -1.89 kcal Atomic # 16 Polarization: 15.12 SS G_CDS: -0.29 Total: 14.83 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -0.07 Total: -0.76 kcal Total: -31.83 -0.33 -32.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10544596_17541816.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -225.281 kcal (2) G-P(sol) polarization free energy of solvation -31.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -257.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -257.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds