Wall clock time and date at job start Mon Mar 8 2021 10:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34221 * 116.99950 * 2 1 4 4 O 1.20829 * 120.00138 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00029 * 180.02562 * 3 2 1 6 6 H 1.09000 * 112.85285 * 311.19342 * 5 3 2 7 7 C 1.53782 * 113.69397 * 82.46630 * 5 3 2 8 8 C 1.53783 * 87.08217 * 139.99229 * 7 5 3 9 9 H 1.09000 * 113.69048 * 89.12965 * 8 7 5 10 10 S 1.81399 * 113.61290 * 220.01864 * 8 7 5 11 11 O 1.42093 * 110.54396 * 166.55342 * 10 8 7 12 12 O 1.42102 * 110.54366 * 29.79755 * 10 8 7 13 13 O 1.52209 * 104.44799 * 278.17782 * 10 8 7 14 14 C 1.35798 * 113.99735 * 282.80008 * 13 10 8 15 15 C 1.40963 * 120.23328 * 94.02843 * 14 13 10 16 16 C 1.40422 * 121.28167 * 0.02562 * 15 14 13 17 17 C 1.36140 * 119.65692 * 180.29383 * 16 15 14 18 18 C 1.39355 * 120.97535 * 359.97438 * 17 16 15 19 19 C 1.36096 * 120.98431 * 359.97438 * 18 17 16 20 20 C 1.40556 * 119.65273 * 0.02562 * 19 18 17 21 21 C 1.40517 * 121.27716 * 179.97438 * 20 19 18 22 22 C 1.36180 * 119.76594 * 180.02562 * 21 20 19 23 23 C 1.36669 * 120.22850 * 273.77912 * 14 13 10 24 24 C 1.50707 * 119.53996 * 359.97438 * 23 14 13 25 25 O 1.42900 * 109.46648 * 284.14868 * 24 23 14 26 26 Si 1.86295 * 109.47133 * 164.15032 * 24 23 14 27 27 C 1.53781 * 87.08163 * 334.56865 * 8 7 5 28 28 H 1.08994 * 109.46498 * 299.99270 * 1 2 3 29 29 H 1.08997 * 109.47315 * 59.99767 * 1 2 3 30 30 H 1.08996 * 109.46621 * 180.02562 * 1 2 3 31 31 H 1.09004 * 113.61292 * 25.44146 * 7 5 3 32 32 H 1.09007 * 113.61313 * 254.54260 * 7 5 3 33 33 H 1.07996 * 120.17030 * 0.31457 * 16 15 14 34 34 H 1.08002 * 119.50755 * 179.97438 * 17 16 15 35 35 H 1.08005 * 119.50430 * 179.97438 * 18 17 16 36 36 H 1.08002 * 120.17544 * 179.97438 * 19 18 17 37 37 H 1.07998 * 120.11739 * 0.05300 * 21 20 19 38 38 H 1.08005 * 119.46608 * 180.02562 * 22 21 20 39 39 H 1.08994 * 109.46878 * 44.14324 * 24 23 14 40 40 H 0.96700 * 113.99955 * 179.97438 * 25 24 23 41 41 H 1.48501 * 110.00083 * 298.67804 * 26 24 23 42 42 H 1.48498 * 110.00199 * 59.99597 * 26 24 23 43 43 H 1.08993 * 113.60997 * 139.98311 * 27 8 7 44 44 H 1.09005 * 113.61010 * 270.80116 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 4.0240 0.6362 0.7549 7 6 4.1925 1.1231 -1.3969 8 6 5.1821 2.2265 -0.9868 9 1 6.0820 1.8494 -0.5010 10 16 5.5413 3.4101 -2.3137 11 8 6.2008 4.5565 -1.7942 12 8 4.4248 3.5384 -3.1833 13 8 6.6002 2.7200 -3.1618 14 6 7.8460 2.7502 -2.6221 15 6 8.3041 1.6753 -1.8337 16 6 7.4944 0.5548 -1.5872 17 6 7.9682 -0.4621 -0.8159 18 6 9.2476 -0.4092 -0.2660 19 6 10.0604 0.6603 -0.4845 20 6 9.6055 1.7293 -1.2757 21 6 10.4158 2.8503 -1.5230 22 6 9.9438 3.8689 -2.2937 23 6 8.6661 3.8207 -2.8438 24 6 8.1786 4.9672 -3.6918 25 8 8.2135 4.5891 -5.0694 26 14 9.2779 6.4476 -3.4260 27 6 4.1078 2.7142 -0.0004 28 1 -0.3632 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 3.5256 1.4142 -2.2085 32 1 4.6631 0.1537 -1.5614 33 1 6.5011 0.4999 -2.0075 34 1 7.3432 -1.3226 -0.6275 35 1 9.5993 -1.2291 0.3427 36 1 11.0495 0.6879 -0.0515 37 1 11.4096 2.9037 -1.1036 38 1 10.5709 4.7281 -2.4810 39 1 7.1562 5.2185 -3.4099 40 1 7.9120 5.2803 -5.6748 41 1 9.2256 6.8702 -2.0034 42 1 10.6748 6.1178 -3.8068 43 1 4.5099 3.0293 0.9623 44 1 3.4186 3.4414 -0.4299 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_10544694_13206342.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:28:17 Heat of formation + Delta-G solvation = -118.224004 kcal Electronic energy + Delta-G solvation = -34451.186146 eV Core-core repulsion = 29816.349584 eV Total energy + Delta-G solvation = -4634.836562 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 379.095 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.83763 -41.94700 -40.49313 -39.69149 -38.58455 -38.24132 -37.36837 -37.26912 -36.97111 -33.55200 -32.33161 -30.57733 -29.91275 -27.83241 -27.44246 -27.06464 -24.98383 -23.96875 -23.43590 -23.18217 -21.61910 -20.81958 -20.01309 -19.39629 -19.03156 -18.75395 -18.26373 -18.16311 -17.94828 -17.53474 -17.40846 -17.00178 -16.67035 -16.13845 -16.02543 -15.65860 -15.43872 -15.15461 -14.97438 -14.76015 -14.51646 -14.47893 -14.14836 -14.06020 -13.93258 -13.77749 -13.74487 -13.53306 -13.38260 -13.28360 -13.24029 -13.14560 -12.94306 -12.81693 -12.45939 -12.35587 -12.07748 -11.99618 -11.87121 -11.83565 -11.71071 -11.35212 -11.04871 -10.28766 -9.94419 -9.18076 -4.98209 -1.29944 -0.67072 -0.38961 0.58015 0.90570 1.06999 1.24786 1.55611 1.60190 1.68411 1.94192 2.36954 2.48935 2.64984 2.73964 2.95738 3.02524 3.13973 3.30428 3.39140 3.44997 3.51278 3.69232 3.75945 3.81304 3.89747 3.95575 4.01501 4.04408 4.10201 4.13229 4.18852 4.20953 4.23251 4.33961 4.41987 4.44638 4.49859 4.57131 4.57480 4.74493 4.76281 4.79952 4.88045 5.02266 5.18902 5.25358 5.30465 5.43923 5.62076 6.60599 6.63847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.356 6.356 3 C 0.467 3.533 4 O -0.498 6.498 5 C -0.093 4.093 6 H 0.138 0.862 7 C -0.095 4.095 8 C -0.659 4.659 9 H 0.166 0.834 10 S 2.588 3.412 11 O -0.944 6.944 12 O -0.913 6.913 13 O -0.644 6.644 14 C 0.089 3.911 15 C -0.053 4.053 16 C -0.131 4.131 17 C -0.093 4.093 18 C -0.111 4.111 19 C -0.092 4.092 20 C -0.042 4.042 21 C -0.069 4.069 22 C -0.118 4.118 23 C -0.019 4.019 24 C -0.102 4.102 25 O -0.540 6.540 26 Si 0.698 3.302 27 C -0.085 4.085 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.104 0.896 31 H 0.113 0.887 32 H 0.106 0.894 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.139 0.861 37 H 0.146 0.854 38 H 0.139 0.861 39 H 0.088 0.912 40 H 0.385 0.615 41 H -0.245 1.245 42 H -0.245 1.245 43 H 0.105 0.895 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.933 -3.154 3.075 5.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.272 6.272 3 C 0.309 3.691 4 O -0.385 6.385 5 C -0.113 4.113 6 H 0.156 0.844 7 C -0.133 4.133 8 C -0.765 4.765 9 H 0.184 0.816 10 S 2.684 3.316 11 O -0.942 6.942 12 O -0.911 6.911 13 O -0.603 6.603 14 C 0.047 3.953 15 C -0.054 4.054 16 C -0.149 4.149 17 C -0.111 4.111 18 C -0.129 4.129 19 C -0.110 4.110 20 C -0.043 4.043 21 C -0.088 4.088 22 C -0.135 4.135 23 C -0.022 4.022 24 C -0.212 4.212 25 O -0.347 6.347 26 Si 0.597 3.403 27 C -0.123 4.123 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.123 0.877 31 H 0.131 0.869 32 H 0.124 0.876 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.151 0.849 36 H 0.157 0.843 37 H 0.164 0.836 38 H 0.156 0.844 39 H 0.106 0.894 40 H 0.233 0.767 41 H -0.168 1.168 42 H -0.170 1.170 43 H 0.124 0.876 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.484 -2.604 3.166 5.379 hybrid contribution -0.716 -1.041 0.528 1.370 sum 2.768 -3.645 3.694 5.881 Atomic orbital electron populations 1.23363 0.75649 1.04142 1.02919 1.86500 1.23952 1.32978 1.83747 1.23436 0.91456 0.81690 0.72496 1.90712 1.66814 1.36379 1.44555 1.22395 0.87913 1.00113 1.00881 0.84394 1.22743 0.95557 0.98344 0.96648 1.32494 1.08456 1.16455 1.19076 0.81611 1.05862 0.74657 0.75580 0.75480 1.93621 1.71762 1.47448 1.81361 1.93677 1.51179 1.84894 1.61393 1.85675 1.27122 1.84890 1.62564 1.17321 0.82311 0.95894 0.99789 1.17995 0.95266 0.94181 0.98003 1.21146 1.00301 0.93551 0.99879 1.20995 0.96053 0.98219 0.95802 1.21030 0.93955 0.98499 0.99404 1.21136 1.00315 0.92556 0.96947 1.17931 0.92385 0.95730 0.98213 1.21231 0.99747 0.91803 0.95995 1.20637 0.94241 0.99970 0.98658 1.19227 0.93473 0.93539 0.95997 1.25131 1.08627 1.03051 0.84398 1.86498 1.89844 1.44364 1.13994 0.94777 0.78253 0.82280 0.84955 1.22607 0.93857 0.95920 0.99959 0.91624 0.91530 0.87717 0.86918 0.87597 0.84828 0.84801 0.84894 0.84336 0.83595 0.84393 0.89440 0.76681 1.16844 1.17037 0.87599 0.87292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 101.05 1.07 1.04 16 2 O -0.36 -0.36 10.57 -39.23 -0.41 -0.77 16 3 C 0.47 0.82 7.49 36.00 0.27 1.09 16 4 O -0.50 -2.39 15.65 -18.75 -0.29 -2.69 16 5 C -0.09 0.12 4.26 -90.96 -0.39 -0.27 16 6 H 0.14 -0.55 8.14 -51.93 -0.42 -0.97 16 7 C -0.09 0.13 6.64 -25.92 -0.17 -0.04 16 8 C -0.66 0.32 2.91 -25.92 -0.08 0.25 16 9 H 0.17 -0.38 5.34 -51.93 -0.28 -0.66 16 10 S 2.59 8.80 4.78 -107.50 -0.51 8.29 16 11 O -0.94 -4.50 13.77 -67.04 -0.92 -5.42 16 12 O -0.91 -5.55 17.29 -67.04 -1.16 -6.71 16 13 O -0.64 -2.55 8.74 -51.43 -0.45 -3.00 16 14 C 0.09 0.34 4.81 -39.12 -0.19 0.15 16 15 C -0.05 -0.10 5.34 -106.72 -0.57 -0.67 16 16 C -0.13 0.05 6.94 -39.51 -0.27 -0.22 16 17 C -0.09 0.19 9.95 -39.92 -0.40 -0.20 16 18 C -0.11 0.25 9.95 -39.94 -0.40 -0.14 16 19 C -0.09 0.14 9.77 -39.48 -0.39 -0.24 16 20 C -0.04 -0.03 5.74 -106.84 -0.61 -0.64 16 21 C -0.07 -0.01 9.77 -39.46 -0.39 -0.40 16 22 C -0.12 -0.25 8.56 -39.97 -0.34 -0.59 16 23 C -0.02 -0.08 4.60 -104.83 -0.48 -0.56 16 24 C -0.10 -0.32 2.12 36.01 0.08 -0.25 16 25 O -0.54 -1.43 12.86 -35.23 -0.45 -1.88 16 26 Si 0.70 0.33 30.19 -169.99 -5.13 -4.80 16 27 C -0.09 0.04 6.99 -25.92 -0.18 -0.14 16 28 H 0.06 -0.05 8.13 -51.93 -0.42 -0.47 16 29 H 0.07 -0.03 8.13 -51.93 -0.42 -0.45 16 30 H 0.10 -0.33 8.14 -51.93 -0.42 -0.75 16 31 H 0.11 -0.04 7.39 -51.93 -0.38 -0.42 16 32 H 0.11 -0.43 6.93 -51.92 -0.36 -0.79 16 33 H 0.13 -0.24 4.45 -52.49 -0.23 -0.47 16 34 H 0.13 -0.60 8.06 -52.49 -0.42 -1.03 16 35 H 0.13 -0.58 8.06 -52.48 -0.42 -1.01 16 36 H 0.14 -0.55 8.06 -52.49 -0.42 -0.97 16 37 H 0.15 -0.45 8.06 -52.49 -0.42 -0.87 16 38 H 0.14 0.12 4.80 -52.48 -0.25 -0.13 16 39 H 0.09 0.32 4.96 -51.93 -0.26 0.06 16 40 H 0.39 -0.98 8.74 45.56 0.40 -0.58 16 41 H -0.24 -0.66 7.11 56.52 0.40 -0.26 16 42 H -0.25 -0.39 6.70 56.52 0.38 -0.01 16 43 H 0.11 -0.25 8.14 -51.93 -0.42 -0.68 16 44 H 0.11 0.08 7.40 -51.93 -0.38 -0.30 16 LS Contribution 366.97 15.07 5.53 5.53 Total: 0.00 -12.04 366.97 -12.02 -24.06 By element: Atomic # 1 Polarization: -5.99 SS G_CDS: -4.78 Total: -10.77 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -3.44 Total: -1.84 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -3.69 Total: -20.47 kcal Atomic # 14 Polarization: 0.33 SS G_CDS: -5.13 Total: -4.80 kcal Atomic # 16 Polarization: 8.80 SS G_CDS: -0.51 Total: 8.29 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -12.04 -12.02 -24.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10544694_13206342.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.159 kcal (2) G-P(sol) polarization free energy of solvation -12.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds