Wall clock time and date at job start Mon Mar 8 2021 10:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34221 * 116.99950 * 2 1 4 4 O 1.20829 * 120.00138 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00029 * 180.02562 * 3 2 1 6 6 H 1.09000 * 112.85285 * 311.19342 * 5 3 2 7 7 C 1.53782 * 113.69397 * 82.46630 * 5 3 2 8 8 C 1.53783 * 87.08217 * 139.99229 * 7 5 3 9 9 H 1.09000 * 113.69048 * 89.12965 * 8 7 5 10 10 S 1.81399 * 113.61290 * 220.01864 * 8 7 5 11 11 O 1.42093 * 110.54396 * 166.55342 * 10 8 7 12 12 O 1.42102 * 110.54366 * 29.79755 * 10 8 7 13 13 O 1.52209 * 104.44799 * 278.17782 * 10 8 7 14 14 C 1.35798 * 113.99735 * 282.80008 * 13 10 8 15 15 C 1.40963 * 120.23328 * 94.02843 * 14 13 10 16 16 C 1.40422 * 121.28167 * 0.02562 * 15 14 13 17 17 C 1.36140 * 119.65692 * 180.29383 * 16 15 14 18 18 C 1.39355 * 120.97535 * 359.97438 * 17 16 15 19 19 C 1.36096 * 120.98431 * 359.97438 * 18 17 16 20 20 C 1.40556 * 119.65273 * 0.02562 * 19 18 17 21 21 C 1.40517 * 121.27716 * 179.97438 * 20 19 18 22 22 C 1.36180 * 119.76594 * 180.02562 * 21 20 19 23 23 C 1.36669 * 120.22850 * 273.77912 * 14 13 10 24 24 C 1.50707 * 119.53996 * 359.97438 * 23 14 13 25 25 O 1.42900 * 109.46648 * 284.14868 * 24 23 14 26 26 Si 1.86295 * 109.47133 * 164.15032 * 24 23 14 27 27 C 1.53781 * 87.08163 * 334.56865 * 8 7 5 28 28 H 1.08994 * 109.46498 * 299.99270 * 1 2 3 29 29 H 1.08997 * 109.47315 * 59.99767 * 1 2 3 30 30 H 1.08996 * 109.46621 * 180.02562 * 1 2 3 31 31 H 1.09004 * 113.61292 * 25.44146 * 7 5 3 32 32 H 1.09007 * 113.61313 * 254.54260 * 7 5 3 33 33 H 1.07996 * 120.17030 * 0.31457 * 16 15 14 34 34 H 1.08002 * 119.50755 * 179.97438 * 17 16 15 35 35 H 1.08005 * 119.50430 * 179.97438 * 18 17 16 36 36 H 1.08002 * 120.17544 * 179.97438 * 19 18 17 37 37 H 1.07998 * 120.11739 * 0.05300 * 21 20 19 38 38 H 1.08005 * 119.46608 * 180.02562 * 22 21 20 39 39 H 1.08994 * 109.46878 * 44.14324 * 24 23 14 40 40 H 0.96700 * 113.99955 * 179.97438 * 25 24 23 41 41 H 1.48501 * 110.00083 * 298.67804 * 26 24 23 42 42 H 1.48498 * 110.00199 * 59.99597 * 26 24 23 43 43 H 1.08993 * 113.60997 * 139.98311 * 27 8 7 44 44 H 1.09005 * 113.61010 * 270.80116 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 4.0240 0.6362 0.7549 7 6 4.1925 1.1231 -1.3969 8 6 5.1821 2.2265 -0.9868 9 1 6.0820 1.8494 -0.5010 10 16 5.5413 3.4101 -2.3137 11 8 6.2008 4.5565 -1.7942 12 8 4.4248 3.5384 -3.1833 13 8 6.6002 2.7200 -3.1618 14 6 7.8460 2.7502 -2.6221 15 6 8.3041 1.6753 -1.8337 16 6 7.4944 0.5548 -1.5872 17 6 7.9682 -0.4621 -0.8159 18 6 9.2476 -0.4092 -0.2660 19 6 10.0604 0.6603 -0.4845 20 6 9.6055 1.7293 -1.2757 21 6 10.4158 2.8503 -1.5230 22 6 9.9438 3.8689 -2.2937 23 6 8.6661 3.8207 -2.8438 24 6 8.1786 4.9672 -3.6918 25 8 8.2135 4.5891 -5.0694 26 14 9.2779 6.4476 -3.4260 27 6 4.1078 2.7142 -0.0004 28 1 -0.3632 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 3.5256 1.4142 -2.2085 32 1 4.6631 0.1537 -1.5614 33 1 6.5011 0.4999 -2.0075 34 1 7.3432 -1.3226 -0.6275 35 1 9.5993 -1.2291 0.3427 36 1 11.0495 0.6879 -0.0515 37 1 11.4096 2.9037 -1.1036 38 1 10.5709 4.7281 -2.4810 39 1 7.1562 5.2185 -3.4099 40 1 7.9120 5.2803 -5.6748 41 1 9.2256 6.8702 -2.0034 42 1 10.6748 6.1178 -3.8068 43 1 4.5099 3.0293 0.9623 44 1 3.4186 3.4414 -0.4299 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10544694_13206342.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:28:15 Heat of formation + Delta-G solvation = -120.327528 kcal Electronic energy + Delta-G solvation = -34451.277361 eV Core-core repulsion = 29816.349584 eV Total energy + Delta-G solvation = -4634.927778 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 379.095 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.89969 -42.01888 -40.49670 -39.70792 -38.72505 -38.45646 -37.55036 -37.51259 -37.02425 -33.49005 -32.29143 -30.54026 -29.91376 -27.80420 -27.41886 -27.06910 -24.97203 -23.96437 -23.51193 -23.16547 -21.68257 -20.81049 -20.13660 -19.51147 -19.12849 -18.81123 -18.44350 -18.24377 -17.94710 -17.58206 -17.42654 -17.04975 -16.61407 -16.29267 -15.98673 -15.70671 -15.46605 -15.13772 -14.97843 -14.79887 -14.56091 -14.50958 -14.17915 -14.07612 -13.94317 -13.89562 -13.85548 -13.66342 -13.54099 -13.45682 -13.37292 -13.13311 -12.93231 -12.84643 -12.39627 -12.21258 -12.02907 -12.01103 -11.95642 -11.89841 -11.73833 -11.45270 -11.02969 -10.44057 -9.89605 -9.12782 -5.04369 -1.42148 -0.69630 -0.35814 0.59840 0.78892 0.96528 1.14798 1.54936 1.61000 1.65821 1.82852 2.24911 2.41802 2.68335 2.75846 2.87758 3.08404 3.09883 3.32945 3.45706 3.51516 3.56202 3.72644 3.81230 3.82275 3.90927 4.03051 4.12844 4.16820 4.22550 4.24378 4.25165 4.26321 4.32035 4.40132 4.49261 4.55326 4.55926 4.66674 4.67471 4.77854 4.84428 4.87536 4.97869 5.05219 5.25377 5.34395 5.42126 5.48301 5.80901 6.55031 6.67328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.355 6.355 3 C 0.464 3.536 4 O -0.538 6.538 5 C -0.082 4.082 6 H 0.179 0.821 7 C -0.099 4.099 8 C -0.631 4.631 9 H 0.192 0.808 10 S 2.577 3.423 11 O -0.969 6.969 12 O -0.957 6.957 13 O -0.653 6.653 14 C 0.060 3.940 15 C -0.066 4.066 16 C -0.153 4.153 17 C -0.078 4.078 18 C -0.111 4.111 19 C -0.091 4.091 20 C -0.061 4.061 21 C -0.056 4.056 22 C -0.147 4.147 23 C -0.049 4.049 24 C -0.129 4.129 25 O -0.558 6.558 26 Si 0.785 3.215 27 C -0.098 4.098 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.132 0.868 31 H 0.095 0.905 32 H 0.142 0.858 33 H 0.141 0.859 34 H 0.165 0.835 35 H 0.161 0.839 36 H 0.165 0.835 37 H 0.179 0.821 38 H 0.142 0.858 39 H 0.072 0.928 40 H 0.402 0.598 41 H -0.278 1.278 42 H -0.256 1.256 43 H 0.129 0.871 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.529 -6.061 5.091 9.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.271 6.271 3 C 0.308 3.692 4 O -0.428 6.428 5 C -0.101 4.101 6 H 0.196 0.804 7 C -0.137 4.137 8 C -0.741 4.741 9 H 0.209 0.791 10 S 2.678 3.322 11 O -0.967 6.967 12 O -0.956 6.956 13 O -0.611 6.611 14 C 0.019 3.981 15 C -0.068 4.068 16 C -0.170 4.170 17 C -0.096 4.096 18 C -0.129 4.129 19 C -0.109 4.109 20 C -0.061 4.061 21 C -0.074 4.074 22 C -0.164 4.164 23 C -0.052 4.052 24 C -0.236 4.236 25 O -0.368 6.368 26 Si 0.685 3.315 27 C -0.137 4.137 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.150 0.850 31 H 0.114 0.886 32 H 0.160 0.840 33 H 0.159 0.841 34 H 0.183 0.817 35 H 0.179 0.821 36 H 0.182 0.818 37 H 0.197 0.803 38 H 0.160 0.840 39 H 0.090 0.910 40 H 0.253 0.747 41 H -0.205 1.205 42 H -0.182 1.182 43 H 0.147 0.853 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.063 -5.498 5.116 9.057 hybrid contribution -1.229 -0.311 -0.014 1.267 sum 3.835 -5.809 5.102 8.630 Atomic orbital electron populations 1.23571 0.74939 1.05821 1.02474 1.86501 1.24773 1.32499 1.83325 1.24056 0.92612 0.81292 0.71226 1.90701 1.67917 1.37650 1.46496 1.22553 0.85935 0.99858 1.01785 0.80389 1.22897 0.95015 0.99511 0.96248 1.32299 1.09630 1.15217 1.16935 0.79129 1.05985 0.73848 0.76301 0.76076 1.93576 1.71947 1.49526 1.81677 1.93612 1.52504 1.85981 1.63470 1.85623 1.27587 1.84679 1.63242 1.17681 0.82107 0.97077 1.01275 1.18246 0.96280 0.94311 0.97932 1.21329 1.00821 0.93647 1.01229 1.21420 0.96392 0.98078 0.93723 1.21452 0.93656 0.98844 0.98955 1.21478 1.01578 0.91793 0.96021 1.18251 0.92156 0.96741 0.98996 1.21658 1.00828 0.90754 0.94180 1.20777 0.94006 1.01284 1.00365 1.19593 0.94646 0.94159 0.96849 1.25563 1.08802 1.04844 0.84399 1.86441 1.90017 1.45943 1.14413 0.93845 0.75870 0.79615 0.82178 1.22766 0.93610 0.96520 1.00786 0.91860 0.92297 0.84973 0.88631 0.83994 0.84099 0.81704 0.82111 0.81797 0.80339 0.84050 0.91028 0.74689 1.20466 1.18214 0.85288 0.89396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.56 113.37 1.20 1.16 16 2 O -0.36 -0.50 10.57 -51.33 -0.54 -1.04 16 3 C 0.46 1.67 7.49 71.24 0.53 2.21 16 4 O -0.54 -6.04 15.65 21.96 0.34 -5.69 16 5 C -0.08 0.31 4.26 -11.01 -0.05 0.26 16 6 H 0.18 -2.09 8.14 -2.39 -0.02 -2.11 16 7 C -0.10 0.33 6.64 31.12 0.21 0.53 16 8 C -0.63 0.47 2.91 31.12 0.09 0.57 16 9 H 0.19 -1.09 5.34 -2.39 -0.01 -1.10 16 10 S 2.58 25.19 4.78 -56.49 -0.27 24.92 16 11 O -0.97 -12.82 13.77 -118.57 -1.63 -14.45 16 12 O -0.96 -15.63 17.29 -118.57 -2.05 -17.68 16 13 O -0.65 -7.07 8.74 -60.38 -0.53 -7.60 16 14 C 0.06 0.59 4.81 22.57 0.11 0.70 16 15 C -0.07 -0.25 5.34 -21.22 -0.11 -0.36 16 16 C -0.15 0.34 6.94 22.31 0.15 0.50 16 17 C -0.08 0.60 9.95 22.05 0.22 0.82 16 18 C -0.11 0.93 9.95 22.04 0.22 1.14 16 19 C -0.09 0.54 9.77 22.34 0.22 0.76 16 20 C -0.06 -0.03 5.74 -21.30 -0.12 -0.15 16 21 C -0.06 -0.01 9.77 22.35 0.22 0.21 16 22 C -0.15 -0.84 8.56 22.02 0.19 -0.65 16 23 C -0.05 -0.52 4.60 -20.00 -0.09 -0.61 16 24 C -0.13 -1.21 2.12 71.24 0.15 -1.06 16 25 O -0.56 -4.63 12.86 -148.98 -1.92 -6.55 16 26 Si 0.78 2.24 30.19 68.60 2.07 4.31 16 27 C -0.10 0.07 6.99 31.12 0.22 0.29 16 28 H 0.06 -0.06 8.13 -2.39 -0.02 -0.08 16 29 H 0.06 0.01 8.13 -2.39 -0.02 -0.01 16 30 H 0.13 -0.98 8.14 -2.39 -0.02 -1.00 16 31 H 0.10 0.08 7.39 -2.38 -0.02 0.06 16 32 H 0.14 -1.52 6.93 -2.38 -0.02 -1.53 16 33 H 0.14 -0.68 4.45 -2.91 -0.01 -0.69 16 34 H 0.17 -2.31 8.06 -2.91 -0.02 -2.33 16 35 H 0.16 -2.21 8.06 -2.91 -0.02 -2.23 16 36 H 0.16 -1.90 8.06 -2.91 -0.02 -1.92 16 37 H 0.18 -1.40 8.06 -2.91 -0.02 -1.42 16 38 H 0.14 0.48 4.80 -2.91 -0.01 0.46 16 39 H 0.07 0.83 4.96 -2.39 -0.01 0.82 16 40 H 0.40 -0.93 8.74 -74.06 -0.65 -1.57 16 41 H -0.28 -2.21 7.11 99.48 0.71 -1.50 16 42 H -0.26 -1.08 6.70 99.48 0.67 -0.41 16 43 H 0.13 -0.72 8.14 -2.39 -0.02 -0.74 16 44 H 0.09 0.35 7.40 -2.38 -0.02 0.34 16 Total: 0.00 -33.71 366.97 -0.74 -34.45 By element: Atomic # 1 Polarization: -17.41 SS G_CDS: 0.43 Total: -16.97 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: 3.35 Total: 6.30 kcal Atomic # 8 Polarization: -46.69 SS G_CDS: -6.32 Total: -53.01 kcal Atomic # 14 Polarization: 2.24 SS G_CDS: 2.07 Total: 4.31 kcal Atomic # 16 Polarization: 25.19 SS G_CDS: -0.27 Total: 24.92 kcal Total: -33.71 -0.74 -34.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10544694_13206342.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.877 kcal (2) G-P(sol) polarization free energy of solvation -33.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds