Wall clock time and date at job start Mon Mar 8 2021 08:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86304 * 1 3 3 C 1.86300 * 109.47328 * 2 1 4 4 C 1.86308 * 109.46941 * 240.00038 * 2 1 3 5 5 C 1.86302 * 109.47300 * 120.00189 * 2 1 3 6 6 C 1.53003 * 109.47041 * 59.99735 * 5 2 1 7 7 C 1.53000 * 109.47142 * 180.02562 * 6 5 2 8 8 S 1.81397 * 109.47131 * 180.02562 * 7 6 5 9 9 O 1.42098 * 110.54398 * 68.37884 * 8 7 6 10 10 O 1.42098 * 110.54412 * 291.62548 * 8 7 6 11 11 O 1.52207 * 104.44604 * 180.02562 * 8 7 6 12 12 C 1.35798 * 114.00391 * 75.00289 * 11 8 7 13 13 C 1.36623 * 120.23072 * 89.99392 * 12 11 8 14 14 C 1.50699 * 119.53604 * 359.97438 * 13 12 11 15 15 O 1.42903 * 109.47294 * 74.99916 * 14 13 12 16 16 Si 1.86301 * 109.47146 * 194.99873 * 14 13 12 17 17 H 1.48506 * 109.47302 * 299.99754 * 16 14 13 18 18 H 1.48503 * 109.47334 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47376 * 59.99883 * 16 14 13 20 20 C 1.39240 * 120.92974 * 180.25829 * 13 12 11 21 21 C 1.36135 * 121.06094 * 359.41369 * 20 13 12 22 22 C 1.40572 * 119.76755 * 0.60079 * 21 20 13 23 23 C 1.40509 * 121.26575 * 179.70547 * 22 21 20 24 24 C 1.36146 * 119.64344 * 179.97438 * 23 22 21 25 25 C 1.39312 * 120.97741 * 0.02562 * 24 23 22 26 26 C 1.36177 * 120.96938 * 359.93239 * 25 24 23 27 27 C 1.40372 * 119.66436 * 0.08769 * 26 25 24 28 28 H 1.08999 * 109.47003 * 299.99643 * 1 2 3 29 29 H 1.08991 * 109.47097 * 59.99824 * 1 2 3 30 30 H 1.08998 * 109.46866 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46945 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47007 * 300.00411 * 3 2 1 33 33 H 1.08999 * 109.46787 * 60.00225 * 3 2 1 34 34 H 1.08999 * 109.46993 * 300.00137 * 4 2 1 35 35 H 1.08995 * 109.46742 * 59.99813 * 4 2 1 36 36 H 1.08999 * 109.47024 * 179.97438 * 4 2 1 37 37 H 1.08999 * 109.47230 * 300.00029 * 5 2 1 38 38 H 1.08996 * 109.47281 * 179.97438 * 5 2 1 39 39 H 1.08999 * 109.46869 * 60.00073 * 6 5 2 40 40 H 1.08999 * 109.47399 * 300.00102 * 6 5 2 41 41 H 1.09004 * 109.46984 * 59.99815 * 7 6 5 42 42 H 1.08999 * 109.47051 * 300.00308 * 7 6 5 43 43 H 1.09002 * 109.47485 * 314.99825 * 14 13 12 44 44 H 0.96699 * 113.99816 * 179.97438 * 15 14 13 45 45 H 1.07998 * 119.46799 * 179.73001 * 20 13 12 46 46 H 1.08005 * 120.11824 * 180.26255 * 21 20 13 47 47 H 1.07997 * 120.17700 * 0.02562 * 23 22 21 48 48 H 1.07998 * 119.50564 * 180.02562 * 24 23 22 49 49 H 1.07989 * 119.51267 * 179.97438 * 25 24 23 50 50 H 1.07995 * 120.16270 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5212 5 6 2.4841 -0.8783 1.5211 6 6 1.9740 -2.3208 1.5211 7 6 2.4836 -3.0419 2.7706 8 16 1.8795 -4.7523 2.7702 9 8 2.4930 -5.4976 1.7274 10 8 0.4720 -4.7841 2.9632 11 8 2.4466 -5.3556 4.0473 12 6 1.8146 -4.9492 5.1784 13 6 0.7432 -5.6489 5.6570 14 6 0.2674 -6.8746 4.9206 15 8 1.1694 -7.9561 5.1630 16 14 -1.4340 -7.3385 5.5213 17 1 -1.3840 -7.6244 6.9777 18 1 -1.9032 -8.5460 4.7952 19 1 -2.3715 -6.2147 5.2694 20 6 0.0810 -5.2421 6.8124 21 6 0.4881 -4.1433 7.5053 22 6 1.5862 -3.3956 7.0457 23 6 2.0292 -2.2528 7.7328 24 6 3.0966 -1.5534 7.2584 25 6 3.7581 -1.9534 6.0994 26 6 3.3568 -3.0562 5.4085 27 6 2.2597 -3.8021 5.8672 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.5741 1.7564 -0.0005 32 1 2.1207 2.2703 -0.8900 33 1 2.1208 2.2702 0.8900 34 1 2.1206 -1.9059 -1.5212 35 1 2.1206 -0.3644 -2.4111 36 1 3.5740 -0.8779 -1.5215 37 1 2.1208 -0.3645 2.4111 38 1 3.5741 -0.8787 1.5209 39 1 2.3374 -2.8346 0.6311 40 1 0.8841 -2.3208 1.5211 41 1 2.1199 -2.5279 3.6604 42 1 3.5735 -3.0419 2.7710 43 1 0.2306 -6.6648 3.8516 44 1 0.9245 -8.7796 4.7192 45 1 -0.7660 -5.8104 7.1673 46 1 -0.0341 -3.8439 8.4021 47 1 1.5261 -1.9314 8.6328 48 1 3.4355 -0.6756 7.7884 49 1 4.6020 -1.3809 5.7440 50 1 3.8793 -3.3547 4.5118 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10544694_14927650.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:02:27 Heat of formation + Delta-G solvation = -125.715908 kcal Electronic energy + Delta-G solvation = -32622.736810 eV Core-core repulsion = 28445.647699 eV Total energy + Delta-G solvation = -4177.089111 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 382.127 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.81608 -40.38708 -38.68803 -38.39813 -37.42552 -37.00862 -35.98338 -33.38801 -32.23284 -30.45938 -29.60048 -28.39214 -28.31818 -28.23917 -27.19671 -24.88096 -23.86138 -23.15034 -22.97941 -21.27382 -19.94580 -19.13366 -19.09009 -18.47979 -18.02167 -17.62612 -17.21962 -16.67013 -16.09824 -15.93662 -15.85885 -15.47045 -15.20985 -14.92104 -14.72453 -14.58222 -14.30251 -14.13337 -14.06707 -13.98782 -13.89941 -13.86050 -13.59615 -13.56455 -13.46222 -13.45834 -13.35652 -13.15914 -13.07313 -13.03510 -12.98749 -12.91112 -12.38815 -12.20178 -12.12544 -11.97327 -11.86019 -11.79119 -11.74221 -10.98284 -10.71487 -10.69421 -10.46555 -10.43227 -9.81816 -9.04585 -1.29232 -0.59829 -0.27615 0.68554 0.91658 1.00406 1.36842 1.45605 1.72733 1.79820 1.89653 1.99929 2.01518 2.38299 2.69584 2.72354 2.83122 3.15693 3.36468 3.47987 3.56323 3.59313 3.66268 3.85794 3.88254 3.98250 4.10075 4.12536 4.21041 4.29840 4.38926 4.46216 4.56899 4.64145 4.70357 4.74791 4.80693 4.82876 4.85649 4.86701 4.87074 4.87315 4.87804 4.95016 5.05213 5.07613 5.13087 5.38889 5.44175 5.46240 5.57367 5.59221 5.65711 5.66521 5.85031 6.60522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.473 4.473 2 Si 1.069 2.931 3 C -0.460 4.460 4 C -0.475 4.475 5 C -0.409 4.409 6 C -0.118 4.118 7 C -0.629 4.629 8 S 2.564 3.436 9 O -0.967 6.967 10 O -0.970 6.970 11 O -0.660 6.660 12 C 0.060 3.940 13 C -0.046 4.046 14 C -0.128 4.128 15 O -0.556 6.556 16 Si 0.985 3.015 17 H -0.232 1.232 18 H -0.249 1.249 19 H -0.247 1.247 20 C -0.140 4.140 21 C -0.056 4.056 22 C -0.059 4.059 23 C -0.090 4.090 24 C -0.115 4.115 25 C -0.086 4.086 26 C -0.152 4.152 27 C -0.072 4.072 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.157 0.843 42 H 0.164 0.836 43 H 0.070 0.930 44 H 0.397 0.603 45 H 0.154 0.846 46 H 0.183 0.817 47 H 0.167 0.833 48 H 0.158 0.842 49 H 0.156 0.844 50 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.392 7.257 4.990 8.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.579 4.579 2 Si 1.261 2.739 3 C -0.567 4.567 4 C -0.581 4.581 5 C -0.494 4.494 6 C -0.156 4.156 7 C -0.760 4.760 8 S 2.666 3.334 9 O -0.965 6.965 10 O -0.969 6.969 11 O -0.618 6.618 12 C 0.018 3.982 13 C -0.049 4.049 14 C -0.236 4.236 15 O -0.365 6.365 16 Si 0.804 3.196 17 H -0.155 1.155 18 H -0.173 1.173 19 H -0.170 1.170 20 C -0.158 4.158 21 C -0.074 4.074 22 C -0.059 4.059 23 C -0.108 4.108 24 C -0.132 4.132 25 C -0.104 4.104 26 C -0.170 4.170 27 C -0.074 4.074 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.175 0.825 42 H 0.182 0.818 43 H 0.088 0.912 44 H 0.248 0.752 45 H 0.171 0.829 46 H 0.200 0.800 47 H 0.184 0.816 48 H 0.176 0.824 49 H 0.174 0.826 50 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.054 6.672 5.378 8.634 hybrid contribution 0.730 -0.404 -1.183 1.447 sum -0.324 6.269 4.195 7.550 Atomic orbital electron populations 1.26424 1.22652 1.04310 1.04533 0.78306 0.65110 0.65589 0.64913 1.26234 1.06505 1.19514 1.04467 1.26447 1.06665 1.08291 1.16663 1.26240 1.07208 0.98973 1.17013 1.21233 1.02270 0.98147 0.93978 1.31159 1.14686 1.20073 1.10065 1.06337 0.74553 0.78992 0.73504 1.93594 1.78014 1.70102 1.54799 1.93576 1.32839 1.86943 1.83511 1.85629 1.69894 1.76535 1.29772 1.17690 0.95068 0.97552 0.87842 1.19508 0.94107 0.95230 0.96094 1.25445 1.07362 0.88056 1.02700 1.86464 1.52267 1.22154 1.75641 0.85219 0.72008 0.81262 0.81154 1.15529 1.17320 1.16984 1.20943 1.01576 0.99351 0.93937 1.21677 0.93983 0.92161 0.99604 1.18270 0.96364 0.97396 0.93919 1.21489 0.96824 0.92499 0.99989 1.21407 0.95130 1.00707 0.95974 1.21322 0.99538 0.95116 0.94411 1.21346 0.96491 0.96947 1.02229 1.18240 0.98222 0.94130 0.96770 0.90942 0.91454 0.91581 0.90993 0.91583 0.90936 0.91608 0.91461 0.90978 0.88842 0.88688 0.89705 0.89560 0.82548 0.81832 0.91172 0.75245 0.82866 0.79996 0.81579 0.82417 0.82616 0.84517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 1.31 8.65 113.37 0.98 2.29 16 2 Si 1.07 -6.71 12.19 68.60 0.84 -5.88 16 3 C -0.46 2.15 8.65 113.37 0.98 3.13 16 4 C -0.48 1.17 8.65 113.37 0.98 2.15 16 5 C -0.41 2.55 4.45 71.98 0.32 2.87 16 6 C -0.12 0.23 4.59 30.60 0.14 0.37 16 7 C -0.63 0.46 4.03 71.98 0.29 0.75 16 8 S 2.56 23.50 4.90 -56.49 -0.28 23.22 16 9 O -0.97 -15.30 18.09 -118.57 -2.15 -17.44 16 10 O -0.97 -11.69 14.20 -118.57 -1.68 -13.38 16 11 O -0.66 -7.25 8.76 -60.37 -0.53 -7.78 16 12 C 0.06 0.56 4.77 22.57 0.11 0.67 16 13 C -0.05 -0.42 4.69 -20.00 -0.09 -0.51 16 14 C -0.13 -1.11 2.17 71.24 0.15 -0.95 16 15 O -0.56 -4.60 12.86 -148.98 -1.92 -6.51 16 16 Si 0.99 2.79 25.44 68.60 1.75 4.54 16 17 H -0.23 -0.14 6.72 99.48 0.67 0.53 16 18 H -0.25 -0.56 7.11 99.48 0.71 0.14 16 19 H -0.25 -0.89 7.11 99.48 0.71 -0.18 16 20 C -0.14 -0.41 8.56 22.02 0.19 -0.22 16 21 C -0.06 0.10 9.77 22.35 0.22 0.32 16 22 C -0.06 -0.01 5.74 -21.30 -0.12 -0.13 16 23 C -0.09 0.50 9.77 22.34 0.22 0.72 16 24 C -0.11 0.77 9.95 22.04 0.22 0.99 16 25 C -0.09 0.44 9.95 22.05 0.22 0.66 16 26 C -0.15 0.05 6.84 22.31 0.15 0.21 16 27 C -0.07 -0.30 5.21 -21.23 -0.11 -0.41 16 28 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 29 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 30 H 0.06 -0.12 7.79 -2.39 -0.02 -0.14 16 31 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 32 H 0.06 -0.23 7.96 -2.38 -0.02 -0.25 16 33 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16 34 H 0.06 -0.10 7.79 -2.39 -0.02 -0.12 16 35 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 36 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 37 H 0.09 -0.75 7.96 -2.39 -0.02 -0.77 16 38 H 0.09 -0.80 7.96 -2.39 -0.02 -0.81 16 39 H 0.08 -0.22 7.79 -2.39 -0.02 -0.24 16 40 H 0.09 -0.25 7.79 -2.39 -0.02 -0.27 16 41 H 0.16 -0.51 5.66 -2.39 -0.01 -0.53 16 42 H 0.16 -0.94 6.88 -2.39 -0.02 -0.96 16 43 H 0.07 0.75 5.31 -2.39 -0.01 0.74 16 44 H 0.40 -0.40 8.74 -74.06 -0.65 -1.04 16 45 H 0.15 -0.19 4.78 -2.91 -0.01 -0.20 16 46 H 0.18 -1.84 8.06 -2.91 -0.02 -1.86 16 47 H 0.17 -1.94 8.06 -2.91 -0.02 -1.97 16 48 H 0.16 -1.89 8.06 -2.91 -0.02 -1.92 16 49 H 0.16 -1.61 8.06 -2.92 -0.02 -1.63 16 50 H 0.14 -0.37 5.11 -2.91 -0.01 -0.38 16 Total: 0.00 -25.63 405.36 1.90 -23.72 By element: Atomic # 1 Polarization: -14.44 SS G_CDS: 1.02 Total: -13.42 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: 4.85 Total: 12.92 kcal Atomic # 8 Polarization: -38.84 SS G_CDS: -6.27 Total: -45.11 kcal Atomic # 14 Polarization: -3.92 SS G_CDS: 2.58 Total: -1.34 kcal Atomic # 16 Polarization: 23.50 SS G_CDS: -0.28 Total: 23.22 kcal Total: -25.63 1.90 -23.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10544694_14927650.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.991 kcal (2) G-P(sol) polarization free energy of solvation -25.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds