Wall clock time and date at job start Mon Mar 8 2021 08:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45198 * 109.47156 * 2 1 4 4 C 1.34228 * 116.99984 * 179.97438 * 3 2 1 5 5 O 1.20830 * 120.00176 * 359.97438 * 4 3 2 6 6 C 1.50704 * 120.00055 * 179.97438 * 4 3 2 7 7 H 1.08998 * 112.85208 * 48.80343 * 6 4 3 8 8 C 1.53779 * 113.61281 * 180.02562 * 6 4 3 9 9 C 1.53780 * 87.08470 * 89.19773 * 8 6 4 10 10 F 1.39895 * 113.61819 * 270.80182 * 9 8 6 11 11 C 1.53002 * 113.61837 * 139.97580 * 9 8 6 12 12 S 1.81400 * 109.47450 * 186.53242 * 11 9 8 13 13 O 1.42095 * 110.54083 * 62.69962 * 12 11 9 14 14 O 1.42100 * 110.54198 * 285.94958 * 12 11 9 15 15 O 1.52193 * 104.44851 * 174.32552 * 12 11 9 16 16 C 1.35803 * 114.00254 * 79.16261 * 15 12 11 17 17 C 1.40968 * 120.22707 * 272.55609 * 16 15 12 18 18 C 1.40419 * 121.28636 * 359.97438 * 17 16 15 19 19 C 1.36133 * 119.65793 * 179.97438 * 18 17 16 20 20 C 1.39349 * 120.98130 * 0.02562 * 19 18 17 21 21 C 1.36105 * 120.98054 * 0.02562 * 20 19 18 22 22 C 1.40551 * 119.64706 * 359.95820 * 21 20 19 23 23 C 1.40524 * 121.27515 * 180.02562 * 22 21 20 24 24 C 1.36177 * 119.77142 * 179.97438 * 23 22 21 25 25 C 1.36666 * 120.23064 * 92.76934 * 16 15 12 26 26 C 1.50694 * 119.54067 * 0.03459 * 25 16 15 27 27 O 1.42898 * 109.47334 * 283.08755 * 26 25 16 28 28 Si 1.86309 * 109.47063 * 163.09026 * 26 25 16 29 29 C 1.53783 * 87.17003 * 25.38851 * 9 8 6 30 30 H 1.08997 * 109.46736 * 60.00483 * 1 2 3 31 31 H 1.09001 * 109.46900 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46819 * 300.00284 * 1 2 3 33 33 H 1.08993 * 109.47245 * 239.99542 * 2 1 3 34 34 H 1.09003 * 109.46920 * 120.00206 * 2 1 3 35 35 H 1.08995 * 113.61831 * 334.65055 * 8 6 4 36 36 H 1.09000 * 113.61358 * 203.74527 * 8 6 4 37 37 H 1.09002 * 109.46621 * 66.52938 * 11 9 8 38 38 H 1.09002 * 109.47136 * 306.53449 * 11 9 8 39 39 H 1.08001 * 120.16682 * 0.02562 * 18 17 16 40 40 H 1.08008 * 119.50754 * 179.97438 * 19 18 17 41 41 H 1.08001 * 119.51433 * 180.02562 * 20 19 18 42 42 H 1.07997 * 120.17993 * 180.02562 * 21 20 19 43 43 H 1.07998 * 120.11107 * 359.95353 * 23 22 21 44 44 H 1.07992 * 119.46895 * 180.02562 * 24 23 22 45 45 H 1.08995 * 109.47229 * 43.09043 * 26 25 16 46 46 H 0.96700 * 113.99985 * 300.00598 * 27 26 25 47 47 H 1.48496 * 109.99956 * 58.68275 * 28 26 25 48 48 H 1.48498 * 109.99841 * 179.97438 * 28 26 25 49 49 H 1.09005 * 113.61670 * 89.16028 * 29 9 8 50 50 H 1.09001 * 113.61655 * 220.06201 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9208 2.9374 0.0000 7 1 3.4709 3.5819 0.7552 8 6 5.4583 2.9680 0.0001 9 6 5.3806 2.9443 -1.5356 10 9 5.3599 1.6541 -2.0759 11 6 6.4036 3.8567 -2.2152 12 16 6.0897 3.8922 -4.0015 13 8 4.8077 4.4424 -4.2715 14 8 6.5067 2.6754 -4.6054 15 8 7.0644 4.9308 -4.5378 16 6 8.3352 4.4738 -4.6809 17 6 9.2375 4.5356 -3.5996 18 6 8.8524 5.0661 -2.3578 19 6 9.7507 5.1092 -1.3359 20 6 11.0502 4.6345 -1.5027 21 6 11.4589 4.1146 -2.6922 22 6 10.5590 4.0534 -3.7701 23 6 10.9444 3.5230 -5.0130 24 6 10.0472 3.4780 -6.0365 25 6 8.7494 3.9547 -5.8753 26 6 7.7864 3.8938 -7.0329 27 8 6.8785 2.8072 -6.8406 28 14 8.7342 3.6383 -8.6164 29 6 3.9858 3.5773 -1.3988 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 5.9128 2.0746 0.4280 36 1 5.8766 3.8909 0.4019 37 1 7.4085 3.4769 -2.0304 38 1 6.3163 4.8651 -1.8108 39 1 7.8484 5.4372 -2.2140 40 1 9.4520 5.5181 -0.3819 41 1 11.7434 4.6798 -0.6757 42 1 12.4690 3.7500 -2.8071 43 1 11.9487 3.1526 -5.1561 44 1 10.3485 3.0690 -6.9895 45 1 7.2279 4.8280 -7.0904 46 1 7.3072 1.9425 -6.7802 47 1 9.5249 2.3838 -8.5383 48 1 7.7957 3.5759 -9.7655 49 1 4.0007 4.6670 -1.3801 50 1 3.2531 3.1749 -2.0984 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_10544694_15494190.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:33:09 Heat of formation + Delta-G solvation = -163.408721 kcal Electronic energy + Delta-G solvation = -42013.987688 eV Core-core repulsion = 36596.662556 eV Total energy + Delta-G solvation = -5417.325132 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 425.117 amu Computer time = 2.40 seconds Orbital eigenvalues (eV) -49.00423 -42.82317 -41.72754 -40.42618 -39.31833 -38.68239 -38.09692 -37.33250 -37.03019 -36.82077 -33.77261 -32.77635 -32.32293 -31.80583 -30.44707 -27.36948 -27.15611 -26.70005 -25.00144 -24.02239 -23.88808 -23.32158 -22.65518 -21.44234 -20.67426 -19.79385 -19.28575 -18.77811 -18.72395 -18.61032 -17.88675 -17.74062 -17.52208 -17.40648 -17.13230 -16.79206 -16.62984 -16.31574 -16.04046 -15.96185 -15.81232 -15.45510 -15.20252 -15.09670 -14.85506 -14.74866 -14.63093 -14.51523 -14.15691 -13.95463 -13.89223 -13.79858 -13.66052 -13.59168 -13.52373 -13.24483 -13.06536 -12.98510 -12.92792 -12.87946 -12.63400 -12.50916 -12.44029 -12.39113 -12.21041 -12.03210 -11.71768 -11.68414 -11.47716 -11.40107 -11.38295 -11.06932 -10.50418 -9.93129 -9.16460 -4.98642 -1.26889 -0.63834 -0.37317 0.60296 1.06152 1.16297 1.21405 1.53171 1.56834 1.62129 1.95323 2.45771 2.64050 2.67659 2.75589 2.80431 3.05152 3.13645 3.16046 3.20763 3.36351 3.45543 3.47687 3.56263 3.63449 3.75561 3.80437 3.92478 3.99066 4.00342 4.01516 4.04023 4.07202 4.16131 4.23205 4.25481 4.33329 4.41980 4.46723 4.51724 4.52359 4.53618 4.65812 4.74655 4.76727 4.80568 4.84202 4.89984 4.91063 5.03250 5.05171 5.18504 5.26398 5.45820 5.48996 5.63187 6.60577 6.76957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 O -0.354 6.354 4 C 0.474 3.526 5 O -0.489 6.489 6 C -0.112 4.112 7 H 0.131 0.869 8 C -0.123 4.123 9 C 0.099 3.901 10 F -0.167 7.167 11 C -0.686 4.686 12 S 2.590 3.410 13 O -0.915 6.915 14 O -0.908 6.908 15 O -0.656 6.656 16 C 0.091 3.909 17 C -0.060 4.060 18 C -0.140 4.140 19 C -0.092 4.092 20 C -0.112 4.112 21 C -0.091 4.091 22 C -0.039 4.039 23 C -0.070 4.070 24 C -0.118 4.118 25 C -0.065 4.065 26 C -0.102 4.102 27 O -0.502 6.502 28 Si 0.699 3.301 29 C -0.147 4.147 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.105 0.895 36 H 0.120 0.880 37 H 0.155 0.845 38 H 0.158 0.842 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.133 0.867 42 H 0.139 0.861 43 H 0.146 0.854 44 H 0.146 0.854 45 H 0.122 0.878 46 H 0.383 0.617 47 H -0.254 1.254 48 H -0.252 1.252 49 H 0.128 0.872 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.572 3.899 3.690 7.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 O -0.271 6.271 4 C 0.315 3.685 5 O -0.375 6.375 6 C -0.131 4.131 7 H 0.149 0.851 8 C -0.161 4.161 9 C 0.080 3.920 10 F -0.147 7.147 11 C -0.809 4.809 12 S 2.683 3.317 13 O -0.913 6.913 14 O -0.906 6.906 15 O -0.615 6.615 16 C 0.049 3.951 17 C -0.061 4.061 18 C -0.158 4.158 19 C -0.110 4.110 20 C -0.130 4.130 21 C -0.109 4.109 22 C -0.040 4.040 23 C -0.089 4.089 24 C -0.135 4.135 25 C -0.069 4.069 26 C -0.211 4.211 27 O -0.309 6.309 28 Si 0.599 3.401 29 C -0.185 4.185 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.123 0.877 36 H 0.139 0.861 37 H 0.173 0.827 38 H 0.175 0.825 39 H 0.150 0.850 40 H 0.151 0.849 41 H 0.151 0.849 42 H 0.157 0.843 43 H 0.163 0.837 44 H 0.163 0.837 45 H 0.140 0.860 46 H 0.233 0.767 47 H -0.179 1.179 48 H -0.176 1.176 49 H 0.146 0.854 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.063 3.551 2.319 6.604 hybrid contribution -0.349 -1.036 1.411 1.785 sum 4.714 2.515 3.730 6.516 Atomic orbital electron populations 1.21826 0.92220 1.03309 1.03710 1.23120 0.95647 0.79592 1.02904 1.86476 1.23850 1.32982 1.83808 1.22864 0.81048 0.91581 0.72993 1.90716 1.60384 1.42495 1.43904 1.22020 0.97558 0.92258 1.01279 0.85100 1.23542 0.93642 1.06230 0.92716 1.21415 0.95348 0.79398 0.95866 1.93029 1.97133 1.37877 1.86667 1.31925 1.10016 1.08919 1.30063 1.05872 0.74928 0.74446 0.76480 1.93650 1.37314 1.77801 1.82571 1.93669 1.80240 1.46448 1.70253 1.85698 1.28081 1.62262 1.85434 1.17296 0.79966 1.02888 0.94920 1.18036 0.93741 1.01021 0.93308 1.21265 1.01021 1.01011 0.92462 1.20962 0.93306 0.97695 0.99042 1.21031 0.96252 0.97739 0.97957 1.21161 0.99338 0.98331 0.92103 1.17935 0.92054 0.98936 0.95046 1.21250 1.00198 0.96234 0.91214 1.20822 0.91795 1.00246 1.00669 1.20215 0.95892 0.95884 0.94907 1.25313 0.97026 0.95038 1.03738 1.86700 1.33315 1.17431 1.93467 0.95092 0.81975 0.87611 0.75406 1.23869 0.95481 1.03216 0.95900 0.91268 0.89939 0.91353 0.90928 0.91006 0.87681 0.86149 0.82704 0.82453 0.85013 0.84900 0.84933 0.84306 0.83676 0.83715 0.86041 0.76738 1.17902 1.17639 0.85387 0.87967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.10 10.29 37.16 0.38 0.49 16 2 C 0.06 0.09 6.19 37.16 0.23 0.32 16 3 O -0.35 -1.01 10.22 -39.25 -0.40 -1.41 16 4 C 0.47 1.55 6.93 36.01 0.25 1.80 16 5 O -0.49 -2.98 14.48 -18.75 -0.27 -3.25 16 6 C -0.11 0.03 4.46 -90.87 -0.40 -0.37 16 7 H 0.13 -0.43 8.14 -51.93 -0.42 -0.85 16 8 C -0.12 0.13 6.93 -25.92 -0.18 -0.05 16 9 C 0.10 0.14 1.55 -89.81 -0.14 0.00 16 10 F -0.17 -0.91 15.16 2.25 0.03 -0.87 16 11 C -0.69 0.14 3.64 37.16 0.14 0.28 16 12 S 2.59 10.17 4.82 -107.50 -0.52 9.65 16 13 O -0.92 -5.93 17.58 -67.04 -1.18 -7.11 16 14 O -0.91 -5.34 12.75 -70.81 -0.90 -6.25 16 15 O -0.66 -2.07 8.64 -51.45 -0.44 -2.51 16 16 C 0.09 0.22 4.65 -39.12 -0.18 0.04 16 17 C -0.06 -0.06 5.45 -106.72 -0.58 -0.64 16 18 C -0.14 0.13 6.74 -39.52 -0.27 -0.14 16 19 C -0.09 0.22 9.95 -39.92 -0.40 -0.18 16 20 C -0.11 0.28 9.95 -39.93 -0.40 -0.12 16 21 C -0.09 0.19 9.77 -39.48 -0.39 -0.19 16 22 C -0.04 0.01 5.74 -106.84 -0.61 -0.60 16 23 C -0.07 0.11 9.77 -39.46 -0.39 -0.27 16 24 C -0.12 0.08 8.55 -39.97 -0.34 -0.26 16 25 C -0.07 -0.11 4.81 -104.84 -0.50 -0.61 16 26 C -0.10 -0.20 2.29 36.00 0.08 -0.11 16 27 O -0.50 -2.13 9.51 -59.54 -0.57 -2.70 16 28 Si 0.70 -0.39 30.30 -169.99 -5.15 -5.54 16 29 C -0.15 -0.01 6.56 -25.83 -0.17 -0.18 16 30 H 0.07 -0.03 8.14 -51.93 -0.42 -0.46 16 31 H 0.08 -0.16 8.14 -51.93 -0.42 -0.59 16 32 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 33 H 0.07 0.14 8.13 -51.93 -0.42 -0.29 16 34 H 0.07 0.08 8.13 -51.93 -0.42 -0.34 16 35 H 0.10 0.05 7.43 -51.93 -0.39 -0.34 16 36 H 0.12 -0.57 8.10 -51.93 -0.42 -0.99 16 37 H 0.16 -0.17 5.79 -51.92 -0.30 -0.47 16 38 H 0.16 -0.67 6.65 -51.92 -0.35 -1.01 16 39 H 0.13 -0.37 4.60 -52.49 -0.24 -0.61 16 40 H 0.13 -0.63 8.06 -52.48 -0.42 -1.06 16 41 H 0.13 -0.60 8.06 -52.49 -0.42 -1.02 16 42 H 0.14 -0.62 8.06 -52.49 -0.42 -1.05 16 43 H 0.15 -0.67 8.06 -52.49 -0.42 -1.09 16 44 H 0.15 -0.38 4.79 -52.49 -0.25 -0.63 16 45 H 0.12 0.21 7.72 -51.93 -0.40 -0.19 16 46 H 0.38 0.73 8.54 45.56 0.39 1.12 16 47 H -0.25 -0.05 6.59 56.52 0.37 0.32 16 48 H -0.25 -0.68 7.11 56.52 0.40 -0.28 16 49 H 0.13 -0.38 8.06 -51.93 -0.42 -0.80 16 50 H 0.10 0.15 8.10 -51.93 -0.42 -0.27 16 LS Contribution 412.22 15.07 6.21 6.21 Total: 0.00 -12.64 412.22 -13.31 -25.94 By element: Atomic # 1 Polarization: -5.13 SS G_CDS: -6.25 Total: -11.38 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -3.87 Total: -0.81 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -3.76 Total: -23.22 kcal Atomic # 9 Polarization: -0.91 SS G_CDS: 0.03 Total: -0.87 kcal Atomic # 14 Polarization: -0.39 SS G_CDS: -5.15 Total: -5.54 kcal Atomic # 16 Polarization: 10.17 SS G_CDS: -0.52 Total: 9.65 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -12.64 -13.31 -25.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10544694_15494190.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.464 kcal (2) G-P(sol) polarization free energy of solvation -12.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds