Wall clock time and date at job start Mon Mar 8 2021 08:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86304 * 109.47483 * 2 1 4 4 C 1.50703 * 109.47467 * 239.99687 * 2 1 3 5 5 C 1.39187 * 119.53864 * 72.15011 * 4 2 1 6 6 C 1.36173 * 121.06317 * 180.02562 * 5 4 2 7 7 C 1.40530 * 119.76597 * 359.97438 * 6 5 4 8 8 C 1.40553 * 121.26867 * 180.02562 * 7 6 5 9 9 C 1.36103 * 119.64794 * 179.97438 * 8 7 6 10 10 C 1.39358 * 120.97783 * 0.05705 * 9 8 7 11 11 C 1.36139 * 120.97909 * 359.96473 * 10 9 8 12 12 C 1.40418 * 119.65941 * 359.97438 * 11 10 9 13 13 C 1.36665 * 119.53844 * 252.14011 * 4 2 1 14 14 O 1.35800 * 120.23125 * 359.74101 * 13 4 2 15 15 S 1.52200 * 114.00041 * 82.89898 * 14 13 4 16 16 O 1.42107 * 104.27948 * 190.17123 * 15 14 13 17 17 O 1.42098 * 104.27732 * 318.02478 * 15 14 13 18 18 C 1.81397 * 104.44955 * 74.09830 * 15 14 13 19 19 H 1.08994 * 112.85303 * 40.35722 * 18 15 14 20 20 C 1.53783 * 113.61359 * 171.55011 * 18 15 14 21 21 C 1.53777 * 87.08021 * 139.97910 * 20 18 15 22 22 H 1.09001 * 113.61448 * 220.01675 * 21 20 18 23 23 O 1.42900 * 113.61551 * 89.20224 * 21 20 18 24 24 C 1.42895 * 114.00419 * 149.99904 * 23 21 20 25 25 C 1.50699 * 109.47273 * 180.02562 * 24 23 21 26 26 C 1.38236 * 119.99719 * 269.72645 * 25 24 23 27 27 C 1.38244 * 119.99631 * 179.76784 * 26 25 24 28 28 C 1.38235 * 120.00107 * 0.48093 * 27 26 25 29 29 C 1.38238 * 119.99796 * 359.79467 * 28 27 26 30 30 C 1.38234 * 120.00058 * 89.99864 * 25 24 23 31 31 C 1.53776 * 113.61226 * 269.04662 * 18 15 14 32 32 H 0.96702 * 113.99989 * 59.99749 * 1 2 3 33 33 H 1.09000 * 109.47251 * 119.99654 * 2 1 3 34 34 H 1.48495 * 110.00167 * 59.99671 * 3 2 1 35 35 H 1.48500 * 110.00125 * 181.31813 * 3 2 1 36 36 H 1.07997 * 119.47370 * 359.97438 * 5 4 2 37 37 H 1.07997 * 120.11962 * 179.97438 * 6 5 4 38 38 H 1.07999 * 120.17507 * 359.94774 * 8 7 6 39 39 H 1.08001 * 119.51290 * 180.02562 * 9 8 7 40 40 H 1.07998 * 119.51624 * 179.97438 * 10 9 8 41 41 H 1.07994 * 120.17124 * 179.97438 * 11 10 9 42 42 H 1.08999 * 113.61907 * 254.53125 * 20 18 15 43 43 H 1.08999 * 113.61404 * 25.43410 * 20 18 15 44 44 H 1.08999 * 109.47183 * 299.99847 * 24 23 21 45 45 H 1.08998 * 109.46913 * 59.99788 * 24 23 21 46 46 H 1.07996 * 120.00102 * 0.02562 * 26 25 24 47 47 H 1.08003 * 119.99761 * 180.25385 * 27 26 25 48 48 H 1.08001 * 120.00103 * 179.77020 * 28 27 26 49 49 H 1.07998 * 119.99889 * 179.97438 * 29 28 27 50 50 H 1.08001 * 120.00354 * 0.02562 * 30 25 24 51 51 H 1.08996 * 113.61777 * 334.56602 * 31 18 15 52 52 H 1.09000 * 113.61101 * 105.47545 * 31 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 1.8102 -0.0976 -2.4742 6 6 2.2531 -0.7116 -3.6061 7 6 2.8434 -1.9842 -3.5242 8 6 3.3119 -2.6464 -4.6720 9 6 3.8787 -3.8782 -4.5545 10 6 4.0014 -4.4957 -3.3112 11 6 3.5585 -3.8842 -2.1784 12 6 2.9692 -2.6123 -2.2603 13 6 2.4998 -1.9474 -1.1093 14 8 2.6159 -2.5299 0.1119 15 16 1.3556 -3.2436 0.5796 16 8 1.6147 -3.5563 1.9414 17 8 0.2999 -2.3637 0.2182 18 6 1.2943 -4.7559 -0.4202 19 1 2.2734 -5.2162 -0.5521 20 6 0.2038 -5.7448 0.0248 21 6 -0.0615 -6.0022 -1.4679 22 1 -1.1191 -6.0995 -1.7130 23 8 0.7346 -7.0538 -2.0178 24 6 0.1072 -7.7568 -3.0921 25 6 1.0306 -8.8377 -3.5922 26 6 1.9276 -8.5650 -4.6081 27 6 2.7779 -9.5552 -5.0635 28 6 2.7245 -10.8208 -4.5099 29 6 1.8235 -11.0949 -3.4979 30 6 0.9768 -10.1034 -3.0389 31 6 0.5048 -4.5967 -1.7302 32 1 -0.3933 0.4417 -0.7650 33 1 1.7923 -0.5138 0.8900 34 1 1.5615 2.4679 1.2084 35 1 3.5346 1.7702 -0.0321 36 1 1.3569 0.8802 -2.5429 37 1 2.1510 -0.2223 -4.5635 38 1 3.2221 -2.1805 -5.6422 39 1 4.2383 -4.3849 -5.4379 40 1 4.4547 -5.4737 -3.2452 41 1 3.6597 -4.3748 -1.2217 42 1 0.5926 -6.6139 0.5554 43 1 -0.6310 -5.2709 0.5412 44 1 -0.8206 -8.2069 -2.7390 45 1 -0.1115 -7.0616 -3.9025 46 1 1.9669 -7.5773 -5.0430 47 1 3.4816 -9.3411 -5.8544 48 1 3.3862 -11.5954 -4.8683 49 1 1.7815 -12.0838 -3.0657 50 1 0.2727 -10.3178 -2.2485 51 1 -0.2476 -3.8090 -1.6936 52 1 1.1368 -4.5390 -2.6165 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10544694_15608174.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:40:14 Heat of formation + Delta-G solvation = -49.507780 kcal Electronic energy + Delta-G solvation = -41460.221840 eV Core-core repulsion = 36451.293570 eV Total energy + Delta-G solvation = -5008.928270 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 427.127 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.77745 -40.84696 -40.32517 -39.94514 -38.69935 -38.31064 -37.30568 -37.04220 -36.62781 -33.31912 -32.69714 -31.96201 -31.82145 -30.33344 -27.53111 -27.14004 -26.99548 -26.51338 -24.73162 -23.81651 -23.51105 -23.13854 -22.29974 -21.81945 -20.89127 -19.96301 -19.13310 -18.84025 -18.56274 -18.22307 -17.71837 -17.41298 -17.29660 -16.91050 -16.67248 -16.62648 -16.28475 -15.90144 -15.76401 -15.64208 -15.32124 -15.19349 -14.96952 -14.80367 -14.69168 -14.38963 -14.30875 -14.18948 -14.11134 -13.92084 -13.83035 -13.73296 -13.66702 -13.52935 -13.48574 -13.26735 -13.18151 -13.16636 -12.75292 -12.37805 -12.21127 -12.11637 -12.04699 -11.97468 -11.88817 -11.82882 -11.73349 -11.28221 -10.92300 -10.57417 -10.41291 -9.85402 -9.79867 -9.63762 -8.96127 -5.15983 -1.20871 -0.51687 -0.15801 0.29749 0.46851 0.76767 0.96934 1.16353 1.61539 1.85434 1.93759 2.37328 2.38947 2.64700 2.92237 2.94566 3.14745 3.23356 3.28486 3.43382 3.53672 3.58826 3.67940 3.75380 3.83440 3.86759 3.90458 4.00983 4.03370 4.12009 4.15446 4.18574 4.26404 4.27118 4.32817 4.34991 4.37414 4.43674 4.54191 4.58531 4.63770 4.69626 4.73507 4.76245 4.79471 4.81681 4.85317 4.99417 5.05004 5.06861 5.12287 5.15967 5.24322 5.47826 5.51775 5.52023 5.59247 5.62186 5.70577 5.91030 6.05930 6.16820 6.94224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.518 6.518 2 C -0.092 4.092 3 Si 0.815 3.185 4 C -0.076 4.076 5 C -0.119 4.119 6 C -0.053 4.053 7 C -0.061 4.061 8 C -0.086 4.086 9 C -0.118 4.118 10 C -0.091 4.091 11 C -0.142 4.142 12 C -0.054 4.054 13 C 0.038 3.962 14 O -0.675 6.675 15 S 2.569 3.431 16 O -0.986 6.986 17 O -0.919 6.919 18 C -0.624 4.624 19 H 0.159 0.841 20 C -0.116 4.116 21 C 0.085 3.915 22 H 0.110 0.890 23 O -0.371 6.371 24 C 0.100 3.900 25 C -0.106 4.106 26 C -0.106 4.106 27 C -0.132 4.132 28 C -0.125 4.125 29 C -0.136 4.136 30 C -0.114 4.114 31 C -0.118 4.118 32 H 0.391 0.609 33 H 0.064 0.936 34 H -0.292 1.292 35 H -0.292 1.292 36 H 0.189 0.811 37 H 0.186 0.814 38 H 0.169 0.831 39 H 0.152 0.848 40 H 0.135 0.865 41 H 0.114 0.886 42 H 0.097 0.903 43 H 0.113 0.887 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.137 0.863 47 H 0.141 0.859 48 H 0.137 0.863 49 H 0.134 0.866 50 H 0.128 0.872 51 H 0.119 0.881 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.994 0.895 -13.573 13.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.325 6.325 2 C -0.200 4.200 3 Si 0.718 3.282 4 C -0.080 4.080 5 C -0.137 4.137 6 C -0.071 4.071 7 C -0.061 4.061 8 C -0.104 4.104 9 C -0.136 4.136 10 C -0.109 4.109 11 C -0.160 4.160 12 C -0.056 4.056 13 C -0.004 4.004 14 O -0.634 6.634 15 S 2.669 3.331 16 O -0.984 6.984 17 O -0.918 6.918 18 C -0.734 4.734 19 H 0.177 0.823 20 C -0.155 4.155 21 C 0.025 3.975 22 H 0.128 0.872 23 O -0.290 6.290 24 C 0.025 3.975 25 C -0.107 4.107 26 C -0.124 4.124 27 C -0.149 4.149 28 C -0.143 4.143 29 C -0.154 4.154 30 C -0.133 4.133 31 C -0.157 4.157 32 H 0.240 0.760 33 H 0.082 0.918 34 H -0.219 1.219 35 H -0.220 1.220 36 H 0.206 0.794 37 H 0.204 0.796 38 H 0.186 0.814 39 H 0.169 0.831 40 H 0.153 0.847 41 H 0.132 0.868 42 H 0.116 0.884 43 H 0.132 0.868 44 H 0.089 0.911 45 H 0.093 0.907 46 H 0.155 0.845 47 H 0.159 0.841 48 H 0.155 0.845 49 H 0.152 0.848 50 H 0.146 0.854 51 H 0.137 0.863 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.250 1.596 -11.856 12.028 hybrid contribution 0.542 -1.764 1.225 2.215 sum -0.708 -0.168 -10.631 10.656 Atomic orbital electron populations 1.86747 1.14507 1.81914 1.49311 1.25392 0.87694 1.11416 0.95536 0.94185 0.76997 0.72265 0.84795 1.20577 0.96207 0.92771 0.98406 1.20998 1.01317 1.02320 0.89021 1.21752 0.92529 0.92039 1.00788 1.18288 1.00287 0.95973 0.91562 1.21482 0.95947 0.94761 0.98213 1.21266 0.98639 0.95790 0.97914 1.21124 0.97144 1.00279 0.92372 1.20987 1.00756 0.94488 0.99732 1.18039 1.00249 0.95482 0.91795 1.17822 1.08771 0.94765 0.79006 1.85662 1.63184 1.73739 1.40800 1.06312 0.73881 0.77619 0.75250 1.93563 1.84093 1.86098 1.34642 1.93779 1.55744 1.58643 1.83590 1.32167 1.09284 1.18736 1.13173 0.82340 1.23016 0.95783 0.98376 0.98343 1.22825 0.95793 0.86514 0.92324 0.87199 1.87952 1.43285 1.47183 1.50587 1.21518 0.94106 0.92241 0.89654 1.19781 0.98905 0.94399 0.97567 1.21304 0.94656 1.00012 0.96412 1.21471 0.99529 0.93289 1.00646 1.21536 0.98615 0.97687 0.96457 1.21439 0.96270 1.00017 0.97699 1.21303 0.99435 0.93107 0.99406 1.23308 0.99162 0.99456 0.93769 0.76005 0.91846 1.21898 1.21959 0.79416 0.79640 0.81355 0.83064 0.84745 0.86844 0.88445 0.86840 0.91126 0.90726 0.84524 0.84110 0.84543 0.84777 0.85363 0.86317 0.88406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 -2.72 10.68 -126.74 -1.35 -4.07 16 2 C -0.09 -0.56 1.70 71.24 0.12 -0.44 16 3 Si 0.81 0.39 31.12 68.60 2.13 2.53 16 4 C -0.08 -0.24 4.08 -20.00 -0.08 -0.32 16 5 C -0.12 0.75 8.45 22.02 0.19 0.93 16 6 C -0.05 0.44 9.77 22.35 0.22 0.66 16 7 C -0.06 0.20 5.74 -21.30 -0.12 0.07 16 8 C -0.09 0.62 9.77 22.34 0.22 0.84 16 9 C -0.12 0.70 9.95 22.04 0.22 0.92 16 10 C -0.09 0.17 9.95 22.05 0.22 0.39 16 11 C -0.14 -0.33 6.62 22.31 0.15 -0.19 16 12 C -0.05 -0.15 4.51 -21.23 -0.10 -0.25 16 13 C 0.04 0.27 4.77 22.57 0.11 0.37 16 14 O -0.67 -8.03 8.26 -60.40 -0.50 -8.53 16 15 S 2.57 28.83 4.81 -56.49 -0.27 28.56 16 16 O -0.99 -19.88 18.09 -118.57 -2.15 -22.03 16 17 O -0.92 -10.71 11.59 -115.14 -1.33 -12.04 16 18 C -0.62 -2.20 2.83 31.12 0.09 -2.12 16 19 H 0.16 0.48 5.86 -2.39 -0.01 0.46 16 20 C -0.12 -0.14 7.50 31.12 0.23 0.10 16 21 C 0.08 -0.13 4.37 31.12 0.14 0.01 16 22 H 0.11 -0.66 7.87 -2.39 -0.02 -0.68 16 23 O -0.37 -0.51 10.26 -148.98 -1.53 -2.04 16 24 C 0.10 -0.19 5.90 71.24 0.42 0.23 16 25 C -0.11 -0.11 5.51 -19.87 -0.11 -0.22 16 26 C -0.11 0.04 9.70 22.27 0.22 0.26 16 27 C -0.13 0.09 10.05 22.27 0.22 0.32 16 28 C -0.13 -0.02 10.05 22.27 0.22 0.20 16 29 C -0.14 -0.15 10.05 22.27 0.22 0.08 16 30 C -0.11 -0.19 9.70 22.27 0.22 0.02 16 31 C -0.12 0.08 6.41 31.12 0.20 0.28 16 32 H 0.39 -2.43 8.57 -74.06 -0.63 -3.07 16 33 H 0.06 0.82 6.35 -2.39 -0.02 0.81 16 34 H -0.29 -2.20 7.11 99.48 0.71 -1.50 16 35 H -0.29 -1.91 7.11 99.48 0.71 -1.21 16 36 H 0.19 -2.91 6.75 -2.91 -0.02 -2.93 16 37 H 0.19 -3.11 8.06 -2.91 -0.02 -3.13 16 38 H 0.17 -2.34 8.06 -2.91 -0.02 -2.36 16 39 H 0.15 -1.61 8.06 -2.91 -0.02 -1.63 16 40 H 0.13 -0.52 8.06 -2.91 -0.02 -0.54 16 41 H 0.11 0.41 5.58 -2.91 -0.02 0.39 16 42 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16 43 H 0.11 -0.15 8.10 -2.39 -0.02 -0.17 16 44 H 0.07 -0.28 8.08 -2.39 -0.02 -0.30 16 45 H 0.07 -0.36 8.08 -2.39 -0.02 -0.38 16 46 H 0.14 -0.57 8.06 -2.91 -0.02 -0.59 16 47 H 0.14 -0.70 8.06 -2.91 -0.02 -0.72 16 48 H 0.14 -0.47 8.06 -2.91 -0.02 -0.49 16 49 H 0.13 -0.28 8.06 -2.91 -0.02 -0.30 16 50 H 0.13 -0.08 8.06 -2.91 -0.02 -0.10 16 51 H 0.12 -0.19 7.32 -2.39 -0.02 -0.21 16 52 H 0.10 -0.11 6.49 -2.39 -0.02 -0.13 16 Total: 0.00 -32.69 426.11 -1.41 -34.11 By element: Atomic # 1 Polarization: -19.02 SS G_CDS: 0.37 Total: -18.64 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: 3.21 Total: 2.17 kcal Atomic # 8 Polarization: -41.86 SS G_CDS: -6.86 Total: -48.72 kcal Atomic # 14 Polarization: 0.39 SS G_CDS: 2.13 Total: 2.53 kcal Atomic # 16 Polarization: 28.83 SS G_CDS: -0.27 Total: 28.56 kcal Total: -32.69 -1.41 -34.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10544694_15608174.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.402 kcal (2) G-P(sol) polarization free energy of solvation -32.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds