Wall clock time and date at job start Mon Mar 8 2021 08:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45201 * 109.47275 * 2 1 4 4 C 1.34224 * 117.00302 * 180.02562 * 3 2 1 5 5 O 1.20831 * 119.99503 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00066 * 179.97438 * 4 3 2 7 7 H 1.08996 * 112.85175 * 309.66557 * 6 4 3 8 8 C 1.53782 * 113.69102 * 80.93655 * 6 4 3 9 9 C 1.53782 * 87.08012 * 139.98897 * 8 6 4 10 10 F 1.39897 * 113.61130 * 89.11854 * 9 8 6 11 11 C 1.52995 * 113.68892 * 220.00520 * 9 8 6 12 12 S 1.81401 * 109.47196 * 282.53824 * 11 9 8 13 13 O 1.42098 * 110.54343 * 291.62120 * 12 11 9 14 14 O 1.42100 * 110.54338 * 68.37918 * 12 11 9 15 15 O 1.52206 * 104.44987 * 180.02562 * 12 11 9 16 16 C 1.35807 * 114.00197 * 78.45669 * 15 12 11 17 17 C 1.40961 * 120.22620 * 271.77672 * 16 15 12 18 18 C 1.40414 * 121.29645 * 0.55638 * 17 16 15 19 19 C 1.36143 * 119.66423 * 179.69217 * 18 17 16 20 20 C 1.39363 * 120.97888 * 359.76203 * 19 18 17 21 21 C 1.36106 * 120.97569 * 359.95959 * 20 19 18 22 22 C 1.40554 * 119.64635 * 0.02562 * 21 20 19 23 23 C 1.40525 * 121.26270 * 179.97438 * 22 21 20 24 24 C 1.36181 * 119.76930 * 179.97438 * 23 22 21 25 25 C 1.36664 * 120.22864 * 92.04444 * 16 15 12 26 26 C 1.50702 * 119.53984 * 359.97438 * 25 16 15 27 27 O 1.42901 * 109.46936 * 283.23968 * 26 25 16 28 28 Si 1.86297 * 109.47460 * 163.23773 * 26 25 16 29 29 C 1.53778 * 87.08147 * 334.56541 * 9 8 6 30 30 H 1.09004 * 109.46441 * 300.00114 * 1 2 3 31 31 H 1.08992 * 109.46994 * 60.00321 * 1 2 3 32 32 H 1.09002 * 109.46986 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47233 * 239.99737 * 2 1 3 34 34 H 1.09001 * 109.47022 * 119.99800 * 2 1 3 35 35 H 1.08992 * 113.61066 * 254.53848 * 8 6 4 36 36 H 1.08997 * 113.61043 * 25.43938 * 8 6 4 37 37 H 1.09001 * 109.47628 * 42.53796 * 11 9 8 38 38 H 1.09000 * 109.47196 * 162.54165 * 11 9 8 39 39 H 1.07998 * 120.16973 * 359.41195 * 18 17 16 40 40 H 1.07995 * 119.50962 * 179.74434 * 19 18 17 41 41 H 1.07993 * 119.51223 * 179.97438 * 20 19 18 42 42 H 1.07995 * 120.17884 * 180.02562 * 21 20 19 43 43 H 1.07993 * 120.11580 * 359.97438 * 23 22 21 44 44 H 1.07993 * 119.46872 * 180.02562 * 24 23 22 45 45 H 1.09000 * 109.47201 * 43.23275 * 26 25 16 46 46 H 0.96704 * 113.99810 * 180.02562 * 27 26 25 47 47 H 1.48511 * 109.99758 * 298.68271 * 28 26 25 48 48 H 1.48504 * 109.99953 * 59.99432 * 28 26 25 49 49 H 1.08999 * 113.61724 * 270.88261 * 29 9 8 50 50 H 1.09002 * 113.68618 * 139.99442 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5449 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9374 -0.0012 7 1 3.4898 3.5734 -0.7744 8 6 3.9524 3.5936 1.3893 9 6 5.3323 4.1543 1.0066 10 9 5.2744 5.3976 0.3678 11 6 6.3482 4.1207 2.1501 12 16 6.0072 5.4798 3.3021 13 8 6.2886 6.7324 2.6928 14 8 4.7825 5.2572 3.9875 15 8 7.0722 5.3400 4.3804 16 6 8.2913 5.8162 4.0179 17 6 9.2128 4.9783 3.3578 18 6 8.8959 3.6456 3.0493 19 6 9.8088 2.8676 2.4053 20 6 11.0548 3.3753 2.0419 21 6 11.3944 4.6637 2.3196 22 6 10.4772 5.4969 2.9831 23 6 10.7925 6.8321 3.2871 24 6 9.8806 7.6125 3.9305 25 6 8.6351 7.1094 4.2954 26 6 7.6519 8.0035 5.0060 27 8 6.6468 8.4328 4.0853 28 14 8.5444 9.4896 5.6884 29 6 5.4578 2.9682 0.0359 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5137 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 3.1917 4.3620 1.5268 36 1 3.9847 2.8767 2.2097 37 1 6.2708 3.1697 2.6771 38 1 7.3543 4.2311 1.7456 39 1 7.9344 3.2385 3.3254 40 1 9.5640 1.8418 2.1729 41 1 11.7612 2.7370 1.5322 42 1 12.3633 5.0439 2.0318 43 1 11.7545 7.2380 3.0116 44 1 10.1278 8.6381 4.1614 45 1 7.1850 7.4533 5.8229 46 1 5.9787 9.0133 4.4748 47 1 9.5710 9.0584 6.6712 48 1 9.1854 10.2483 4.5844 49 1 5.9016 2.0804 0.4864 50 1 5.9125 3.2304 -0.9194 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_10544694_16464788.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:54:39 Heat of formation + Delta-G solvation = -162.214754 kcal Electronic energy + Delta-G solvation = -41599.295244 eV Core-core repulsion = 36182.021887 eV Total energy + Delta-G solvation = -5417.273358 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 425.117 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -49.10315 -42.81096 -41.79228 -40.42831 -39.36810 -38.52914 -38.05870 -37.45207 -37.00326 -36.83572 -33.79310 -32.83473 -32.41103 -31.81847 -30.47054 -27.39190 -27.19485 -26.88341 -24.98658 -24.02095 -23.90319 -23.18013 -22.39686 -21.36152 -20.88682 -19.76455 -19.31095 -18.91330 -18.82151 -18.24505 -18.06892 -17.78833 -17.62901 -17.58757 -17.38355 -17.02113 -16.45781 -16.34744 -15.90333 -15.80244 -15.62341 -15.46538 -15.29022 -15.15902 -14.92291 -14.64430 -14.58096 -14.40823 -14.26912 -14.09185 -13.79401 -13.77463 -13.74445 -13.59928 -13.38798 -13.11263 -13.01970 -12.98122 -12.97884 -12.88079 -12.84653 -12.58489 -12.54635 -12.40842 -12.23598 -11.93483 -11.90883 -11.84427 -11.55794 -11.47651 -11.34251 -11.06495 -10.23536 -9.94028 -9.16751 -5.01680 -1.25644 -0.62703 -0.38555 0.59704 1.05586 1.06859 1.20517 1.54644 1.55785 1.64590 1.88556 2.46219 2.59902 2.65238 2.73837 2.81119 3.04861 3.10008 3.11127 3.15157 3.31561 3.45423 3.47097 3.59975 3.72402 3.75758 3.83251 3.92109 3.94596 3.96763 3.97854 4.00494 4.05398 4.11678 4.24180 4.25852 4.27308 4.31306 4.37628 4.49558 4.53496 4.55221 4.60202 4.69256 4.74049 4.78664 4.79973 4.89782 4.94257 5.00383 5.02015 5.18372 5.25738 5.40496 5.44109 5.62401 6.66687 6.74014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.060 3.940 3 O -0.353 6.353 4 C 0.476 3.524 5 O -0.503 6.503 6 C -0.109 4.109 7 H 0.138 0.862 8 C -0.147 4.147 9 C 0.106 3.894 10 F -0.169 7.169 11 C -0.689 4.689 12 S 2.580 3.420 13 O -0.882 6.882 14 O -0.918 6.918 15 O -0.658 6.658 16 C 0.091 3.909 17 C -0.059 4.059 18 C -0.139 4.139 19 C -0.091 4.091 20 C -0.111 4.111 21 C -0.091 4.091 22 C -0.040 4.040 23 C -0.071 4.071 24 C -0.116 4.116 25 C -0.021 4.021 26 C -0.104 4.104 27 O -0.507 6.507 28 Si 0.698 3.302 29 C -0.121 4.121 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.110 0.890 36 H 0.115 0.885 37 H 0.155 0.845 38 H 0.156 0.844 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.139 0.861 43 H 0.146 0.854 44 H 0.139 0.861 45 H 0.078 0.922 46 H 0.375 0.625 47 H -0.252 1.252 48 H -0.244 1.244 49 H 0.120 0.880 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.949 -0.519 0.356 2.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 O -0.270 6.270 4 C 0.318 3.682 5 O -0.391 6.391 6 C -0.128 4.128 7 H 0.156 0.844 8 C -0.185 4.185 9 C 0.087 3.913 10 F -0.149 7.149 11 C -0.812 4.812 12 S 2.672 3.328 13 O -0.880 6.880 14 O -0.917 6.917 15 O -0.616 6.616 16 C 0.049 3.951 17 C -0.060 4.060 18 C -0.156 4.156 19 C -0.109 4.109 20 C -0.129 4.129 21 C -0.109 4.109 22 C -0.040 4.040 23 C -0.089 4.089 24 C -0.134 4.134 25 C -0.025 4.025 26 C -0.214 4.214 27 O -0.313 6.313 28 Si 0.598 3.402 29 C -0.159 4.159 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.128 0.872 36 H 0.134 0.866 37 H 0.173 0.827 38 H 0.174 0.826 39 H 0.150 0.850 40 H 0.152 0.848 41 H 0.152 0.848 42 H 0.157 0.843 43 H 0.164 0.836 44 H 0.156 0.844 45 H 0.096 0.904 46 H 0.223 0.777 47 H -0.176 1.176 48 H -0.169 1.169 49 H 0.138 0.862 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.871 -0.341 0.494 2.933 hybrid contribution 0.021 -1.456 -0.545 1.555 sum 2.893 -1.798 -0.051 3.406 Atomic orbital electron populations 1.21830 0.92192 1.03319 1.03795 1.23126 0.95750 0.79637 1.02808 1.86522 1.24020 1.32941 1.83482 1.23225 0.80885 0.91819 0.72244 1.90685 1.60561 1.42721 1.45117 1.22479 0.97180 0.91971 1.01131 0.84377 1.23807 0.96198 1.01828 0.96625 1.21134 0.95413 0.82355 0.92440 1.93011 1.97059 1.42109 1.82717 1.31938 1.10143 1.24418 1.14693 1.06209 0.74841 0.76417 0.75367 1.93825 1.82022 1.35213 1.76937 1.93654 1.40738 1.86625 1.70636 1.85705 1.29991 1.83803 1.62134 1.17259 0.82045 0.92347 1.03421 1.18023 0.94090 0.94221 0.99675 1.21220 1.01098 0.92705 1.00615 1.20993 0.93237 1.00225 0.96441 1.21040 0.96756 0.95814 0.99259 1.21153 0.98956 0.93727 0.97065 1.17919 0.92805 0.94338 0.98962 1.21223 0.99737 0.92239 0.95720 1.20651 0.92645 1.00521 0.99539 1.19198 0.95035 0.91967 0.96254 1.24883 0.95470 1.05511 0.95533 1.86973 1.39372 1.69786 1.35125 0.94815 0.82836 0.81335 0.81189 1.23572 0.93752 0.97638 1.00940 0.91248 0.91294 0.89943 0.91001 0.91004 0.87175 0.86620 0.82654 0.82585 0.84973 0.84763 0.84831 0.84273 0.83641 0.84373 0.90412 0.77748 1.17645 1.16852 0.86195 0.88085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.23 10.29 37.16 0.38 0.62 16 2 C 0.06 0.02 6.19 37.16 0.23 0.25 16 3 O -0.35 -0.62 10.22 -39.24 -0.40 -1.02 16 4 C 0.48 0.91 7.49 36.01 0.27 1.18 16 5 O -0.50 -2.09 15.66 -18.75 -0.29 -2.38 16 6 C -0.11 0.01 4.23 -90.96 -0.39 -0.37 16 7 H 0.14 -0.22 8.14 -51.93 -0.42 -0.64 16 8 C -0.15 -0.01 6.91 -25.92 -0.18 -0.19 16 9 C 0.11 0.08 1.57 -89.81 -0.14 -0.06 16 10 F -0.17 -0.50 16.51 2.25 0.04 -0.46 16 11 C -0.69 -0.16 3.71 37.16 0.14 -0.03 16 12 S 2.58 9.66 4.85 -107.50 -0.52 9.14 16 13 O -0.88 -5.18 12.33 -70.86 -0.87 -6.05 16 14 O -0.92 -5.28 17.97 -67.03 -1.20 -6.48 16 15 O -0.66 -2.42 8.64 -51.46 -0.44 -2.86 16 16 C 0.09 0.34 4.68 -39.12 -0.18 0.15 16 17 C -0.06 -0.13 5.41 -106.72 -0.58 -0.70 16 18 C -0.14 -0.03 6.67 -39.52 -0.26 -0.29 16 19 C -0.09 0.12 9.95 -39.92 -0.40 -0.28 16 20 C -0.11 0.18 9.95 -39.93 -0.40 -0.22 16 21 C -0.09 0.10 9.77 -39.48 -0.39 -0.29 16 22 C -0.04 -0.04 5.74 -106.84 -0.61 -0.65 16 23 C -0.07 -0.02 9.77 -39.46 -0.39 -0.41 16 24 C -0.12 -0.22 8.56 -39.97 -0.34 -0.56 16 25 C -0.02 -0.07 4.85 -104.84 -0.51 -0.58 16 26 C -0.10 -0.20 2.27 36.01 0.08 -0.12 16 27 O -0.51 -1.39 9.22 -59.82 -0.55 -1.94 16 28 Si 0.70 -0.48 30.23 -169.99 -5.14 -5.62 16 29 C -0.12 0.07 6.85 -25.92 -0.18 -0.11 16 30 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 31 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 32 H 0.08 -0.23 8.14 -51.93 -0.42 -0.65 16 33 H 0.07 0.01 8.13 -51.93 -0.42 -0.41 16 34 H 0.07 0.01 8.13 -51.93 -0.42 -0.41 16 35 H 0.11 -0.03 8.14 -51.93 -0.42 -0.46 16 36 H 0.12 -0.11 7.99 -51.93 -0.42 -0.52 16 37 H 0.16 -0.44 6.97 -51.92 -0.36 -0.80 16 38 H 0.16 -0.10 5.34 -51.92 -0.28 -0.38 16 39 H 0.13 -0.20 4.84 -52.49 -0.25 -0.46 16 40 H 0.13 -0.47 8.06 -52.49 -0.42 -0.90 16 41 H 0.13 -0.50 8.06 -52.49 -0.42 -0.93 16 42 H 0.14 -0.50 8.06 -52.49 -0.42 -0.92 16 43 H 0.15 -0.41 8.06 -52.49 -0.42 -0.84 16 44 H 0.14 0.08 4.82 -52.49 -0.25 -0.17 16 45 H 0.08 0.07 7.72 -51.93 -0.40 -0.33 16 46 H 0.38 -0.82 8.74 45.56 0.40 -0.42 16 47 H -0.25 -0.31 7.11 56.52 0.40 0.09 16 48 H -0.24 -0.31 6.67 56.52 0.38 0.07 16 49 H 0.12 -0.13 7.41 -51.93 -0.39 -0.51 16 50 H 0.10 -0.14 8.14 -51.93 -0.42 -0.56 16 LS Contribution 415.42 15.07 6.26 6.26 Total: 0.00 -12.08 415.42 -13.21 -25.29 By element: Atomic # 1 Polarization: -4.96 SS G_CDS: -6.24 Total: -11.20 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -3.83 Total: -2.66 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -3.77 Total: -20.75 kcal Atomic # 9 Polarization: -0.50 SS G_CDS: 0.04 Total: -0.46 kcal Atomic # 14 Polarization: -0.48 SS G_CDS: -5.14 Total: -5.62 kcal Atomic # 16 Polarization: 9.66 SS G_CDS: -0.52 Total: 9.14 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -12.08 -13.21 -25.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10544694_16464788.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.921 kcal (2) G-P(sol) polarization free energy of solvation -12.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.25 seconds