Wall clock time and date at job start Mon Mar 8 2021 08:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45201 * 109.47275 * 2 1 4 4 C 1.34224 * 117.00302 * 180.02562 * 3 2 1 5 5 O 1.20831 * 119.99503 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00066 * 179.97438 * 4 3 2 7 7 H 1.08996 * 112.85175 * 309.66557 * 6 4 3 8 8 C 1.53782 * 113.69102 * 80.93655 * 6 4 3 9 9 C 1.53782 * 87.08012 * 139.98897 * 8 6 4 10 10 F 1.39897 * 113.61130 * 89.11854 * 9 8 6 11 11 C 1.52995 * 113.68892 * 220.00520 * 9 8 6 12 12 S 1.81401 * 109.47196 * 282.53824 * 11 9 8 13 13 O 1.42098 * 110.54343 * 291.62120 * 12 11 9 14 14 O 1.42100 * 110.54338 * 68.37918 * 12 11 9 15 15 O 1.52206 * 104.44987 * 180.02562 * 12 11 9 16 16 C 1.35807 * 114.00197 * 78.45669 * 15 12 11 17 17 C 1.40961 * 120.22620 * 271.77672 * 16 15 12 18 18 C 1.40414 * 121.29645 * 0.55638 * 17 16 15 19 19 C 1.36143 * 119.66423 * 179.69217 * 18 17 16 20 20 C 1.39363 * 120.97888 * 359.76203 * 19 18 17 21 21 C 1.36106 * 120.97569 * 359.95959 * 20 19 18 22 22 C 1.40554 * 119.64635 * 0.02562 * 21 20 19 23 23 C 1.40525 * 121.26270 * 179.97438 * 22 21 20 24 24 C 1.36181 * 119.76930 * 179.97438 * 23 22 21 25 25 C 1.36664 * 120.22864 * 92.04444 * 16 15 12 26 26 C 1.50702 * 119.53984 * 359.97438 * 25 16 15 27 27 O 1.42901 * 109.46936 * 283.23968 * 26 25 16 28 28 Si 1.86297 * 109.47460 * 163.23773 * 26 25 16 29 29 C 1.53778 * 87.08147 * 334.56541 * 9 8 6 30 30 H 1.09004 * 109.46441 * 300.00114 * 1 2 3 31 31 H 1.08992 * 109.46994 * 60.00321 * 1 2 3 32 32 H 1.09002 * 109.46986 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47233 * 239.99737 * 2 1 3 34 34 H 1.09001 * 109.47022 * 119.99800 * 2 1 3 35 35 H 1.08992 * 113.61066 * 254.53848 * 8 6 4 36 36 H 1.08997 * 113.61043 * 25.43938 * 8 6 4 37 37 H 1.09001 * 109.47628 * 42.53796 * 11 9 8 38 38 H 1.09000 * 109.47196 * 162.54165 * 11 9 8 39 39 H 1.07998 * 120.16973 * 359.41195 * 18 17 16 40 40 H 1.07995 * 119.50962 * 179.74434 * 19 18 17 41 41 H 1.07993 * 119.51223 * 179.97438 * 20 19 18 42 42 H 1.07995 * 120.17884 * 180.02562 * 21 20 19 43 43 H 1.07993 * 120.11580 * 359.97438 * 23 22 21 44 44 H 1.07993 * 119.46872 * 180.02562 * 24 23 22 45 45 H 1.09000 * 109.47201 * 43.23275 * 26 25 16 46 46 H 0.96704 * 113.99810 * 180.02562 * 27 26 25 47 47 H 1.48511 * 109.99758 * 298.68271 * 28 26 25 48 48 H 1.48504 * 109.99953 * 59.99432 * 28 26 25 49 49 H 1.08999 * 113.61724 * 270.88261 * 29 9 8 50 50 H 1.09002 * 113.68618 * 139.99442 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5449 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9374 -0.0012 7 1 3.4898 3.5734 -0.7744 8 6 3.9524 3.5936 1.3893 9 6 5.3323 4.1543 1.0066 10 9 5.2744 5.3976 0.3678 11 6 6.3482 4.1207 2.1501 12 16 6.0072 5.4798 3.3021 13 8 6.2886 6.7324 2.6928 14 8 4.7825 5.2572 3.9875 15 8 7.0722 5.3400 4.3804 16 6 8.2913 5.8162 4.0179 17 6 9.2128 4.9783 3.3578 18 6 8.8959 3.6456 3.0493 19 6 9.8088 2.8676 2.4053 20 6 11.0548 3.3753 2.0419 21 6 11.3944 4.6637 2.3196 22 6 10.4772 5.4969 2.9831 23 6 10.7925 6.8321 3.2871 24 6 9.8806 7.6125 3.9305 25 6 8.6351 7.1094 4.2954 26 6 7.6519 8.0035 5.0060 27 8 6.6468 8.4328 4.0853 28 14 8.5444 9.4896 5.6884 29 6 5.4578 2.9682 0.0359 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5137 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 3.1917 4.3620 1.5268 36 1 3.9847 2.8767 2.2097 37 1 6.2708 3.1697 2.6771 38 1 7.3543 4.2311 1.7456 39 1 7.9344 3.2385 3.3254 40 1 9.5640 1.8418 2.1729 41 1 11.7612 2.7370 1.5322 42 1 12.3633 5.0439 2.0318 43 1 11.7545 7.2380 3.0116 44 1 10.1278 8.6381 4.1614 45 1 7.1850 7.4533 5.8229 46 1 5.9787 9.0133 4.4748 47 1 9.5710 9.0584 6.6712 48 1 9.1854 10.2483 4.5844 49 1 5.9016 2.0804 0.4864 50 1 5.9125 3.2304 -0.9194 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10544694_16464788.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:54:38 Heat of formation + Delta-G solvation = -160.954445 kcal Electronic energy + Delta-G solvation = -41599.240593 eV Core-core repulsion = 36182.021887 eV Total energy + Delta-G solvation = -5417.218706 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 425.117 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -49.24073 -42.88356 -41.90216 -40.46242 -39.40856 -38.60778 -38.33744 -37.59587 -37.25252 -36.94007 -33.77052 -32.82146 -32.40315 -31.84715 -30.45095 -27.36420 -27.23773 -26.92688 -25.00036 -24.01211 -23.91875 -23.17821 -22.48692 -21.44975 -20.92225 -19.90565 -19.41387 -19.05009 -18.93674 -18.35400 -18.15820 -17.84926 -17.70805 -17.66156 -17.41669 -17.05534 -16.54522 -16.42328 -15.97553 -15.86885 -15.64604 -15.50667 -15.36462 -15.17295 -14.94469 -14.69854 -14.63250 -14.43563 -14.29892 -14.11180 -13.87020 -13.83502 -13.72341 -13.69882 -13.41054 -13.31279 -13.18891 -13.11325 -12.98855 -12.95682 -12.94366 -12.57705 -12.54017 -12.38927 -12.17463 -11.98003 -11.95990 -11.88608 -11.60287 -11.55487 -11.44281 -11.07224 -10.31976 -9.92869 -9.15087 -4.98248 -1.39325 -0.68790 -0.38539 0.59730 0.89621 0.94176 1.19353 1.51249 1.57672 1.66102 1.86514 2.31671 2.58594 2.62905 2.70204 2.77815 2.94108 3.07896 3.10038 3.12239 3.34649 3.43698 3.51010 3.62705 3.72256 3.78665 3.81802 3.94777 3.95232 4.00681 4.01157 4.02335 4.17111 4.21278 4.24774 4.29021 4.30406 4.36139 4.38503 4.52844 4.56524 4.59258 4.67732 4.74951 4.78930 4.84228 4.87194 4.94225 4.96516 5.01619 5.09857 5.28163 5.36603 5.36732 5.45624 5.75166 6.55188 6.83519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.478 3.522 5 O -0.528 6.528 6 C -0.106 4.106 7 H 0.152 0.848 8 C -0.154 4.154 9 C 0.096 3.904 10 F -0.185 7.185 11 C -0.674 4.674 12 S 2.576 3.424 13 O -0.913 6.913 14 O -0.952 6.952 15 O -0.662 6.662 16 C 0.062 3.938 17 C -0.074 4.074 18 C -0.160 4.160 19 C -0.083 4.083 20 C -0.114 4.114 21 C -0.091 4.091 22 C -0.060 4.060 23 C -0.060 4.060 24 C -0.143 4.143 25 C -0.047 4.047 26 C -0.130 4.130 27 O -0.530 6.530 28 Si 0.795 3.205 29 C -0.112 4.112 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.097 0.903 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.109 0.891 36 H 0.125 0.875 37 H 0.187 0.813 38 H 0.168 0.832 39 H 0.142 0.858 40 H 0.160 0.840 41 H 0.160 0.840 42 H 0.166 0.834 43 H 0.178 0.822 44 H 0.144 0.856 45 H 0.075 0.925 46 H 0.391 0.609 47 H -0.278 1.278 48 H -0.270 1.270 49 H 0.129 0.871 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.375 -1.832 -0.609 3.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.322 3.678 5 O -0.417 6.417 6 C -0.125 4.125 7 H 0.169 0.831 8 C -0.191 4.191 9 C 0.077 3.923 10 F -0.165 7.165 11 C -0.800 4.800 12 S 2.673 3.327 13 O -0.911 6.911 14 O -0.950 6.950 15 O -0.621 6.621 16 C 0.021 3.979 17 C -0.075 4.075 18 C -0.178 4.178 19 C -0.101 4.101 20 C -0.132 4.132 21 C -0.108 4.108 22 C -0.061 4.061 23 C -0.078 4.078 24 C -0.160 4.160 25 C -0.050 4.050 26 C -0.237 4.237 27 O -0.338 6.338 28 Si 0.696 3.304 29 C -0.150 4.150 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.116 0.884 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.127 0.873 36 H 0.143 0.857 37 H 0.204 0.796 38 H 0.186 0.814 39 H 0.159 0.841 40 H 0.178 0.822 41 H 0.178 0.822 42 H 0.183 0.817 43 H 0.195 0.805 44 H 0.162 0.838 45 H 0.093 0.907 46 H 0.240 0.760 47 H -0.204 1.204 48 H -0.196 1.196 49 H 0.147 0.853 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.241 -1.631 -0.444 4.565 hybrid contribution -0.357 -1.186 -0.312 1.277 sum 3.884 -2.817 -0.756 4.857 Atomic orbital electron populations 1.21842 0.90858 1.04319 1.03707 1.23308 0.96863 0.79053 1.02799 1.86531 1.24058 1.33835 1.83246 1.23554 0.80740 0.92207 0.71343 1.90667 1.60989 1.43638 1.46418 1.22561 0.97613 0.90994 1.01326 0.83065 1.23919 0.95935 1.02061 0.97209 1.21342 0.95882 0.82172 0.92926 1.92980 1.97148 1.43320 1.83046 1.31844 1.10719 1.23869 1.13571 1.06044 0.74298 0.76920 0.75458 1.93783 1.82238 1.37670 1.77395 1.93602 1.42447 1.87247 1.71725 1.85654 1.30303 1.83858 1.62264 1.17583 0.82191 0.93128 1.05041 1.18285 0.94394 0.95053 0.99782 1.21425 1.02290 0.92274 1.01817 1.21383 0.92886 1.01111 0.94689 1.21437 0.97052 0.95952 0.98713 1.21501 0.99493 0.93774 0.96058 1.18251 0.93030 0.95031 0.99740 1.21644 1.00431 0.91952 0.93800 1.20826 0.92823 1.01212 1.01143 1.19605 0.96051 0.92520 0.96803 1.25367 0.95741 1.07289 0.95347 1.86933 1.40205 1.70456 1.36176 0.93761 0.80238 0.78157 0.78265 1.23590 0.93431 0.96959 1.01053 0.91362 0.91304 0.88407 0.91032 0.91029 0.87270 0.85682 0.79564 0.81400 0.84059 0.82239 0.82196 0.81653 0.80484 0.83839 0.90681 0.75975 1.20394 1.19614 0.85300 0.86990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.49 10.29 71.98 0.74 1.24 16 2 C 0.05 0.03 6.19 71.98 0.45 0.48 16 3 O -0.36 -1.32 10.22 -51.36 -0.52 -1.84 16 4 C 0.48 1.77 7.49 71.24 0.53 2.31 16 5 O -0.53 -4.26 15.66 21.95 0.34 -3.92 16 6 C -0.11 0.06 4.23 -11.01 -0.05 0.01 16 7 H 0.15 -0.53 8.14 -2.39 -0.02 -0.55 16 8 C -0.15 -0.07 6.91 31.12 0.22 0.14 16 9 C 0.10 0.15 1.57 -10.27 -0.02 0.14 16 10 F -0.18 -1.28 16.51 44.97 0.74 -0.54 16 11 C -0.67 -0.49 3.71 71.98 0.27 -0.22 16 12 S 2.58 24.65 4.85 -56.49 -0.27 24.38 16 13 O -0.91 -13.27 12.33 -114.92 -1.42 -14.69 16 14 O -0.95 -13.35 17.97 -118.57 -2.13 -15.48 16 15 O -0.66 -6.47 8.64 -60.48 -0.52 -6.99 16 16 C 0.06 0.59 4.68 22.57 0.11 0.69 16 17 C -0.07 -0.37 5.41 -21.23 -0.11 -0.49 16 18 C -0.16 0.01 6.67 22.31 0.15 0.15 16 19 C -0.08 0.37 9.95 22.05 0.22 0.59 16 20 C -0.11 0.65 9.95 22.04 0.22 0.87 16 21 C -0.09 0.36 9.77 22.34 0.22 0.58 16 22 C -0.06 -0.11 5.74 -21.30 -0.12 -0.23 16 23 C -0.06 -0.05 9.77 22.35 0.22 0.17 16 24 C -0.14 -0.74 8.56 22.02 0.19 -0.56 16 25 C -0.05 -0.43 4.85 -20.00 -0.10 -0.53 16 26 C -0.13 -0.82 2.27 71.24 0.16 -0.66 16 27 O -0.53 -4.37 9.22 -125.47 -1.16 -5.53 16 28 Si 0.79 -0.07 30.23 68.60 2.07 2.00 16 29 C -0.11 0.23 6.85 31.12 0.21 0.44 16 30 H 0.07 -0.20 8.14 -2.39 -0.02 -0.21 16 31 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 32 H 0.10 -0.63 8.14 -2.39 -0.02 -0.64 16 33 H 0.07 0.04 8.13 -2.39 -0.02 0.02 16 34 H 0.07 0.03 8.13 -2.39 -0.02 0.01 16 35 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 36 H 0.12 -0.22 7.99 -2.39 -0.02 -0.24 16 37 H 0.19 -1.17 6.97 -2.39 -0.02 -1.19 16 38 H 0.17 -0.22 5.34 -2.39 -0.01 -0.23 16 39 H 0.14 -0.47 4.84 -2.91 -0.01 -0.48 16 40 H 0.16 -1.60 8.06 -2.91 -0.02 -1.62 16 41 H 0.16 -1.77 8.06 -2.91 -0.02 -1.80 16 42 H 0.17 -1.64 8.06 -2.91 -0.02 -1.67 16 43 H 0.18 -1.23 8.06 -2.91 -0.02 -1.26 16 44 H 0.14 0.39 4.82 -2.91 -0.01 0.37 16 45 H 0.08 0.38 7.72 -2.39 -0.02 0.37 16 46 H 0.39 -0.67 8.74 -74.05 -0.65 -1.32 16 47 H -0.28 -1.04 7.11 99.48 0.71 -0.33 16 48 H -0.27 -1.02 6.67 99.48 0.66 -0.36 16 49 H 0.13 -0.47 7.41 -2.39 -0.02 -0.49 16 50 H 0.11 -0.45 8.14 -2.39 -0.02 -0.47 16 Total: 0.00 -30.75 415.42 0.99 -29.76 By element: Atomic # 1 Polarization: -12.64 SS G_CDS: 0.36 Total: -12.28 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: 3.50 Total: 5.13 kcal Atomic # 8 Polarization: -43.04 SS G_CDS: -5.41 Total: -48.45 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 0.74 Total: -0.54 kcal Atomic # 14 Polarization: -0.07 SS G_CDS: 2.07 Total: 2.00 kcal Atomic # 16 Polarization: 24.65 SS G_CDS: -0.27 Total: 24.38 kcal Total: -30.75 0.99 -29.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10544694_16464788.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.193 kcal (2) G-P(sol) polarization free energy of solvation -30.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds