Wall clock time and date at job start Mon Mar 8 2021 09:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99491 * 2 1 4 4 C 1.52992 * 112.85292 * 294.15002 * 3 2 1 5 5 F 1.39898 * 109.47299 * 196.20483 * 4 3 2 6 6 F 1.39899 * 109.47234 * 316.20652 * 4 3 2 7 7 F 1.39901 * 109.46966 * 76.20646 * 4 3 2 8 8 C 1.53781 * 113.68686 * 162.88298 * 3 2 1 9 9 C 1.53784 * 87.08465 * 270.87605 * 8 3 2 10 10 H 1.08995 * 113.69264 * 220.01296 * 9 8 3 11 11 C 1.52997 * 113.61468 * 89.11107 * 9 8 3 12 12 S 1.81405 * 109.46619 * 88.13596 * 11 9 8 13 13 O 1.42095 * 110.54538 * 70.65911 * 12 11 9 14 14 O 1.42099 * 110.54129 * 293.90034 * 12 11 9 15 15 O 1.52200 * 104.44658 * 182.28184 * 12 11 9 16 16 C 1.35802 * 114.00000 * 76.93318 * 15 12 11 17 17 C 1.40963 * 120.22992 * 266.52348 * 16 15 12 18 18 C 1.40414 * 121.29433 * 359.96203 * 17 16 15 19 19 C 1.36140 * 119.65903 * 180.02562 * 18 17 16 20 20 C 1.39360 * 120.98262 * 0.27516 * 19 18 17 21 21 C 1.36102 * 120.96984 * 359.41105 * 20 19 18 22 22 C 1.40548 * 119.65410 * 0.59909 * 21 20 19 23 23 C 1.40521 * 121.26474 * 179.65520 * 22 21 20 24 24 C 1.36174 * 119.76781 * 180.02562 * 23 22 21 25 25 C 1.36672 * 120.22886 * 86.50582 * 16 15 12 26 26 C 1.50690 * 119.53893 * 0.02562 * 25 16 15 27 27 O 1.42907 * 109.47467 * 75.70805 * 26 25 16 28 28 Si 1.86298 * 109.47372 * 195.71018 * 26 25 16 29 29 C 1.53779 * 113.61226 * 65.35118 * 3 2 1 30 30 H 1.08998 * 109.47118 * 185.10774 * 1 2 3 31 31 H 1.08995 * 109.47608 * 305.10852 * 1 2 3 32 32 H 1.09005 * 109.47437 * 65.10925 * 1 2 3 33 33 H 1.09001 * 113.61714 * 156.32397 * 8 3 2 34 34 H 1.09004 * 113.61381 * 25.42089 * 8 3 2 35 35 H 1.08996 * 109.47565 * 328.13853 * 11 9 8 36 36 H 1.09002 * 109.47150 * 208.13002 * 11 9 8 37 37 H 1.07996 * 120.16899 * 0.04748 * 18 17 16 38 38 H 1.08007 * 119.50438 * 179.97438 * 19 18 17 39 39 H 1.07996 * 119.50802 * 179.71823 * 20 19 18 40 40 H 1.08011 * 120.16778 * 180.25617 * 21 20 19 41 41 H 1.07994 * 120.12085 * 0.03386 * 23 22 21 42 42 H 1.08001 * 119.47199 * 180.02562 * 24 23 22 43 43 H 1.09000 * 109.47020 * 315.71287 * 26 25 16 44 44 H 0.96694 * 113.99598 * 65.08613 * 27 26 25 45 45 H 1.48504 * 110.00223 * 179.97438 * 28 26 25 46 46 H 1.48500 * 109.99979 * 301.31741 * 28 26 25 47 47 H 1.09000 * 113.61770 * 334.64341 * 29 3 2 48 48 H 1.08997 * 113.68989 * 203.75540 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 1.7248 2.0829 -1.2864 5 9 2.6031 3.1678 -1.3803 6 9 1.9038 1.2412 -2.3894 7 9 0.4065 2.5508 -1.2659 8 6 3.4909 1.3227 0.4145 9 6 3.0022 1.4823 1.8638 10 1 3.5989 2.1785 2.4531 11 6 2.7622 0.1516 2.5798 12 16 4.3028 -0.3999 3.3629 13 8 4.6213 0.4269 4.4737 14 8 5.2786 -0.7123 2.3783 15 8 3.9527 -1.7446 3.9841 16 6 3.8842 -2.7648 3.0904 17 6 2.6497 -3.1159 2.5074 18 6 1.4686 -2.4289 2.8310 19 6 0.2944 -2.7962 2.2483 20 6 0.2442 -3.8498 1.3375 21 6 1.3699 -4.5340 0.9953 22 6 2.6005 -4.1834 1.5769 23 6 3.7822 -4.8715 1.2536 24 6 4.9579 -4.5065 1.8357 25 6 5.0117 -3.4581 2.7497 26 6 6.3313 -3.0829 3.3731 27 8 6.3764 -3.5631 4.7183 28 14 7.7202 -3.8467 2.3942 29 6 1.7238 2.1072 1.2807 30 1 -0.3633 -1.0236 0.0915 31 1 -0.3634 0.5910 0.8406 32 1 -0.3634 0.4325 -0.9322 33 1 4.0391 2.1875 0.0407 34 1 4.0072 0.3807 0.2291 35 1 2.4341 -0.5957 1.8574 36 1 1.9939 0.2824 3.3418 37 1 1.4917 -1.6130 3.5383 38 1 -0.6127 -2.2664 2.4994 39 1 -0.7010 -4.1241 0.8929 40 1 1.3168 -5.3458 0.2848 41 1 3.7583 -5.6869 0.5459 42 1 5.8634 -5.0385 1.5835 43 1 6.4388 -1.9982 3.3709 44 1 6.3646 -4.5271 4.7923 45 1 9.0272 -3.4836 2.9986 46 1 7.5673 -5.3235 2.3630 47 1 0.8133 1.7988 1.7945 48 1 1.7882 3.1868 1.1451 There are 76 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 76 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_10544694_17541816.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:23:18 Heat of formation + Delta-G solvation = -226.322705 kcal Electronic energy + Delta-G solvation = -44890.913165 eV Core-core repulsion = 38978.860259 eV Total energy + Delta-G solvation = -5912.052906 eV No. of doubly occupied orbitals = 76 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 433.098 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -51.23479 -48.77190 -48.69977 -42.78940 -41.46679 -40.32827 -38.80551 -38.43389 -37.43170 -37.28029 -36.92896 -33.44240 -32.22823 -31.66728 -30.29773 -28.37593 -27.82759 -27.19122 -26.78056 -24.85372 -23.83374 -23.65763 -23.21299 -21.65504 -20.64896 -20.08187 -19.70420 -19.51346 -19.36109 -18.91842 -18.86022 -18.74989 -17.82544 -17.41330 -17.18801 -16.78384 -16.61258 -16.41360 -16.09574 -15.90748 -15.76222 -15.64590 -15.57479 -15.49921 -15.30031 -15.16820 -15.04884 -14.89550 -14.83593 -14.80919 -14.75086 -14.51802 -14.34434 -13.98498 -13.87899 -13.75878 -13.57613 -13.48773 -13.32248 -13.24905 -13.16354 -12.93792 -12.58013 -12.37608 -12.33079 -12.20947 -12.15617 -12.04210 -11.92444 -11.69723 -11.44660 -10.97192 -10.76090 -10.74447 -9.75385 -8.99343 -4.96242 -1.28940 -0.55526 -0.20070 0.74759 0.95369 1.18138 1.46741 1.54061 1.79056 1.86881 2.10230 2.36853 2.55961 2.61652 2.71226 2.85112 2.91759 3.12004 3.18625 3.22223 3.32130 3.37887 3.51484 3.58274 3.62368 3.73819 3.86043 3.96824 4.03567 4.15660 4.23003 4.28328 4.32087 4.35071 4.37194 4.43341 4.47253 4.52456 4.55131 4.66585 4.71132 4.76108 4.77734 4.84339 4.88110 4.93451 5.00627 5.11328 5.18296 5.44558 5.51524 5.64241 5.74882 5.90685 6.39828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.002 3.998 2 O -0.337 6.337 3 C 0.042 3.958 4 C 0.433 3.567 5 F -0.178 7.178 6 F -0.186 7.186 7 F -0.183 7.183 8 C -0.133 4.133 9 C -0.098 4.098 10 H 0.117 0.883 11 C -0.625 4.625 12 S 2.575 3.425 13 O -0.970 6.970 14 O -0.957 6.957 15 O -0.662 6.662 16 C 0.058 3.942 17 C -0.064 4.064 18 C -0.146 4.146 19 C -0.085 4.085 20 C -0.115 4.115 21 C -0.092 4.092 22 C -0.057 4.057 23 C -0.056 4.056 24 C -0.133 4.133 25 C -0.075 4.075 26 C -0.133 4.133 27 O -0.545 6.545 28 Si 0.783 3.217 29 C -0.129 4.129 30 H 0.116 0.884 31 H 0.072 0.928 32 H 0.043 0.957 33 H 0.134 0.866 34 H 0.101 0.899 35 H 0.167 0.833 36 H 0.171 0.829 37 H 0.132 0.868 38 H 0.154 0.846 39 H 0.155 0.845 40 H 0.162 0.838 41 H 0.179 0.821 42 H 0.163 0.837 43 H 0.107 0.893 44 H 0.387 0.613 45 H -0.297 1.297 46 H -0.237 1.237 47 H 0.115 0.885 48 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.042 -4.277 -5.291 9.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 O -0.255 6.255 3 C 0.000 4.000 4 C 0.379 3.621 5 F -0.159 7.159 6 F -0.167 7.167 7 F -0.165 7.165 8 C -0.169 4.169 9 C -0.118 4.118 10 H 0.135 0.865 11 C -0.754 4.754 12 S 2.675 3.325 13 O -0.968 6.968 14 O -0.956 6.956 15 O -0.621 6.621 16 C 0.016 3.984 17 C -0.066 4.066 18 C -0.164 4.164 19 C -0.103 4.103 20 C -0.133 4.133 21 C -0.110 4.110 22 C -0.057 4.057 23 C -0.074 4.074 24 C -0.151 4.151 25 C -0.078 4.078 26 C -0.239 4.239 27 O -0.354 6.354 28 Si 0.683 3.317 29 C -0.167 4.167 30 H 0.135 0.865 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.152 0.848 34 H 0.120 0.880 35 H 0.184 0.816 36 H 0.189 0.811 37 H 0.150 0.850 38 H 0.172 0.828 39 H 0.173 0.827 40 H 0.180 0.820 41 H 0.197 0.803 42 H 0.180 0.820 43 H 0.124 0.876 44 H 0.237 0.763 45 H -0.224 1.224 46 H -0.162 1.162 47 H 0.134 0.866 48 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.615 -4.340 -4.688 8.505 hybrid contribution -0.996 0.459 0.952 1.452 sum -6.611 -3.881 -3.735 8.528 Atomic orbital electron populations 1.23340 0.78737 1.05501 1.01783 1.88073 1.22033 1.21621 1.93760 1.23984 0.99744 0.86693 0.89621 1.21467 0.74175 0.78695 0.87770 1.93173 1.69174 1.56941 1.96610 1.93192 1.94975 1.71161 1.57407 1.93186 1.36908 1.89536 1.96829 1.23582 0.91809 1.07007 0.94547 1.21802 1.00304 0.93906 0.95752 0.86528 1.30947 1.21603 1.08493 1.14406 1.06030 0.78311 0.73844 0.74269 1.93604 1.83803 1.67211 1.52190 1.93565 1.58126 1.80499 1.63375 1.85656 1.90924 1.33878 1.51604 1.17734 0.94785 0.92063 0.93831 1.18173 0.91884 0.98524 0.98012 1.21194 0.92319 1.01247 1.01641 1.21259 0.97941 0.96386 0.94719 1.21352 0.99888 0.94983 0.97040 1.21458 0.90472 1.00151 0.98875 1.18248 0.96046 0.94949 0.96495 1.21674 0.90126 0.98281 0.97338 1.20964 1.00952 0.96483 0.96663 1.20312 0.94613 0.96009 0.96891 1.25915 1.02908 1.06189 0.88890 1.86657 1.96077 1.27981 1.24670 0.93409 0.72149 0.78591 0.87534 1.23652 0.99263 1.01489 0.92282 0.86545 0.90991 0.93836 0.84834 0.87995 0.81563 0.81134 0.85038 0.82819 0.82724 0.82022 0.80347 0.82028 0.87558 0.76322 1.22436 1.16172 0.86637 0.85703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 10.29 113.37 1.17 1.16 16 2 O -0.34 0.90 8.37 -148.98 -1.25 -0.34 16 3 C 0.04 -0.11 0.85 -10.27 -0.01 -0.12 16 4 C 0.43 0.39 2.52 71.98 0.18 0.57 16 5 F -0.18 -0.27 15.82 44.97 0.71 0.44 16 6 F -0.19 -0.86 17.10 44.97 0.77 -0.09 16 7 F -0.18 -0.18 15.41 44.97 0.69 0.52 16 8 C -0.13 0.31 6.89 31.12 0.21 0.52 16 9 C -0.10 0.37 3.85 -10.26 -0.04 0.33 16 10 H 0.12 -0.62 8.12 -2.39 -0.02 -0.64 16 11 C -0.63 1.48 3.78 71.98 0.27 1.75 16 12 S 2.57 19.13 4.81 -56.49 -0.27 18.86 16 13 O -0.97 -14.68 18.09 -118.57 -2.15 -16.82 16 14 O -0.96 -8.77 13.79 -118.57 -1.64 -10.40 16 15 O -0.66 -6.12 8.75 -60.42 -0.53 -6.65 16 16 C 0.06 0.37 4.81 22.57 0.11 0.48 16 17 C -0.06 -0.11 5.26 -21.23 -0.11 -0.22 16 18 C -0.15 0.34 7.09 22.31 0.16 0.50 16 19 C -0.09 0.61 9.81 22.05 0.22 0.83 16 20 C -0.11 0.96 9.95 22.04 0.22 1.18 16 21 C -0.09 0.64 9.77 22.34 0.22 0.86 16 22 C -0.06 0.12 5.74 -21.30 -0.12 0.00 16 23 C -0.06 0.27 9.77 22.35 0.22 0.49 16 24 C -0.13 0.21 8.56 22.02 0.19 0.40 16 25 C -0.07 -0.38 4.60 -20.00 -0.09 -0.47 16 26 C -0.13 -1.03 2.14 71.23 0.15 -0.88 16 27 O -0.55 -5.27 12.93 -148.98 -1.93 -7.19 16 28 Si 0.78 1.04 30.16 68.60 2.07 3.11 16 29 C -0.13 0.86 6.50 31.12 0.20 1.06 16 30 H 0.12 -1.22 8.00 -2.39 -0.02 -1.24 16 31 H 0.07 -0.75 6.55 -2.39 -0.02 -0.76 16 32 H 0.04 -0.20 6.72 -2.38 -0.02 -0.22 16 33 H 0.13 -0.62 7.01 -2.39 -0.02 -0.63 16 34 H 0.10 -0.07 8.10 -2.39 -0.02 -0.09 16 35 H 0.17 -0.54 3.80 -2.39 -0.01 -0.55 16 36 H 0.17 -1.39 7.29 -2.39 -0.02 -1.41 16 37 H 0.13 -0.58 5.58 -2.91 -0.02 -0.60 16 38 H 0.15 -1.94 8.06 -2.91 -0.02 -1.96 16 39 H 0.16 -2.06 8.06 -2.91 -0.02 -2.09 16 40 H 0.16 -2.01 8.06 -2.90 -0.02 -2.04 16 41 H 0.18 -2.21 8.06 -2.91 -0.02 -2.23 16 42 H 0.16 -1.02 4.77 -2.91 -0.01 -1.03 16 43 H 0.11 1.26 4.98 -2.39 -0.01 1.25 16 44 H 0.39 0.38 8.61 -74.06 -0.64 -0.25 16 45 H -0.30 -2.57 7.11 99.48 0.71 -1.86 16 46 H -0.24 0.32 6.64 99.48 0.66 0.98 16 47 H 0.12 -1.18 6.63 -2.39 -0.02 -1.19 16 48 H 0.12 -1.08 8.06 -2.39 -0.02 -1.10 16 Total: 0.00 -27.87 397.60 0.05 -27.81 By element: Atomic # 1 Polarization: -18.09 SS G_CDS: 0.43 Total: -17.66 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: 3.14 Total: 8.43 kcal Atomic # 8 Polarization: -33.93 SS G_CDS: -7.48 Total: -41.42 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 2.17 Total: 0.86 kcal Atomic # 14 Polarization: 1.04 SS G_CDS: 2.07 Total: 3.11 kcal Atomic # 16 Polarization: 19.13 SS G_CDS: -0.27 Total: 18.86 kcal Total: -27.87 0.05 -27.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_10544694_17541816.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -198.508 kcal (2) G-P(sol) polarization free energy of solvation -27.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds